Wall clock time and date at job start Tue Mar 31 2020 16:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34743 * 117.00309 * 2 1 4 4 O 1.21505 * 119.99897 * 359.97438 * 3 2 1 5 5 C 1.47417 * 120.00230 * 180.27188 * 3 2 1 6 6 C 1.40013 * 120.15985 * 89.44531 * 5 3 2 7 7 F 1.35098 * 120.03368 * 0.02572 * 6 5 3 8 8 C 1.38170 * 119.93259 * 179.76976 * 6 5 3 9 9 C 1.38287 * 120.26616 * 0.50860 * 8 6 5 10 10 C 1.38825 * 120.32546 * 359.74847 * 9 8 6 11 11 N 1.40174 * 119.97051 * 179.97438 * 10 9 8 12 12 C 1.34782 * 120.00359 * 24.83550 * 11 10 9 13 13 O 1.21291 * 119.99369 * 5.52912 * 12 11 10 14 14 C 1.50690 * 120.00223 * 185.53050 * 12 11 10 15 15 S 1.81007 * 109.47347 * 179.97438 * 14 12 11 16 16 C 1.76192 * 100.00128 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00417 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99933 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99794 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46848 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47313 * 119.99588 * 20 18 16 23 23 H 1.48504 * 109.46696 * 239.99937 * 20 18 16 24 24 C 1.38840 * 120.05864 * 359.97438 * 10 9 8 25 25 F 1.35100 * 120.12624 * 180.02562 * 24 10 9 26 26 H 1.09003 * 109.47339 * 300.00393 * 1 2 3 27 27 H 1.09003 * 109.47168 * 59.99904 * 1 2 3 28 28 H 1.08998 * 109.47630 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.86632 * 180.23544 * 8 6 5 30 30 H 1.07992 * 119.83975 * 179.72225 * 9 8 6 31 31 H 0.97008 * 119.99935 * 204.84107 * 11 10 9 32 32 H 1.08995 * 109.47390 * 300.00261 * 14 12 11 33 33 H 1.09009 * 109.47220 * 60.00354 * 14 12 11 34 34 H 0.97003 * 120.00111 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5359 1.2777 -0.0061 6 6 4.2339 1.3054 -1.2195 7 9 3.5589 1.2620 -2.3890 8 6 5.6134 1.3825 -1.2197 9 6 6.3095 1.4220 -0.0255 10 6 5.6288 1.3897 1.1840 11 7 6.3418 1.4295 2.3901 12 6 7.5697 1.9840 2.4292 13 8 8.0166 2.5375 1.4468 14 6 8.3872 1.9164 3.6933 15 16 9.9754 2.7436 3.4298 16 6 10.7043 2.5197 5.0182 17 1 10.1628 1.9958 5.7919 18 6 11.9745 3.0168 5.2752 19 7 12.6348 3.6549 4.3321 20 14 12.7476 2.7788 6.9590 21 1 11.8072 2.0344 7.8346 22 1 14.0098 2.0090 6.8199 23 1 13.0400 4.1045 7.5611 24 6 4.2423 1.3180 1.2000 25 9 3.5784 1.2871 2.3762 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 6.1505 1.4077 -2.1564 30 1 7.3879 1.4777 -0.0337 31 1 5.9516 1.0579 3.1968 32 1 7.8487 2.4118 4.5012 33 1 8.5608 0.8734 3.9584 34 1 13.5226 4.0020 4.5115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362270128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:50 Heat of formation + Delta-G solvation = -192.366881 kcal Electronic energy + Delta-G solvation = -24746.587516 eV Core-core repulsion = 20406.812581 eV Total energy + Delta-G solvation = -4339.774935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.44203 -50.30101 -41.88008 -41.51221 -39.38223 -37.75322 -36.02656 -34.57331 -32.85872 -31.84625 -29.68961 -28.78722 -27.64567 -25.86988 -24.12829 -23.15143 -21.69196 -20.18766 -19.73972 -19.34765 -19.01139 -18.59622 -17.98317 -17.67335 -17.31767 -17.06201 -16.86759 -16.79950 -16.69593 -16.54762 -16.08184 -15.64787 -15.13806 -14.91492 -14.57061 -14.44340 -14.37084 -13.99223 -13.80980 -13.51982 -13.19783 -13.16272 -13.08811 -12.91137 -12.60973 -12.14352 -11.99999 -11.75326 -11.69885 -11.14924 -11.06830 -10.39552 -10.28931 -9.38839 -8.65012 -8.34599 -6.11393 -0.62815 -0.43197 0.56625 1.13746 1.25972 1.38039 1.42614 1.45734 1.56863 1.90509 2.09373 2.26687 2.36374 2.90371 3.00652 3.21512 3.26375 3.49267 3.59113 3.64828 4.03227 4.18679 4.25289 4.26588 4.29178 4.43139 4.50615 4.63657 4.72426 4.83385 4.95922 5.00787 5.44393 5.44642 6.07026 6.21234 6.24862 6.84921 7.08249 8.74407 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.002355 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.523139 B =11886.562949 C =12595.787873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.348 6.348 3 C 0.524 3.476 4 O -0.509 6.509 5 C -0.171 4.171 6 C 0.144 3.856 7 F -0.123 7.123 8 C -0.113 4.113 9 C -0.060 4.060 10 C 0.121 3.879 11 N -0.654 5.654 12 C 0.544 3.456 13 O -0.523 6.523 14 C -0.132 4.132 15 S -0.137 6.137 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 0.995 3.005 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.277 1.277 24 C 0.130 3.870 25 F -0.120 7.120 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.189 0.811 30 H 0.168 0.832 31 H 0.432 0.568 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.498 -10.980 -7.983 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C 0.366 3.634 4 O -0.397 6.397 5 C -0.175 4.175 6 C 0.123 3.877 7 F -0.102 7.102 8 C -0.132 4.132 9 C -0.080 4.080 10 C 0.024 3.976 11 N -0.301 5.301 12 C 0.332 3.668 13 O -0.398 6.398 14 C -0.283 4.283 15 S 0.090 5.910 16 C -0.693 4.693 17 H 0.103 0.897 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.817 3.183 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.202 1.202 24 C 0.107 3.893 25 F -0.099 7.099 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.159 0.841 29 H 0.206 0.794 30 H 0.186 0.814 31 H 0.271 0.729 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.856 -9.706 -9.576 24.918 hybrid contribution -0.602 -0.512 2.369 2.498 sum -21.459 -10.219 -7.206 24.836 Atomic orbital electron populations 1.23768 0.73364 1.06594 1.03167 1.86654 1.26048 1.30762 1.82923 1.20710 0.88278 0.82352 0.72031 1.90888 1.66736 1.36965 1.45128 1.18800 0.90627 1.14738 0.93318 1.17222 0.90129 1.01340 0.78983 1.91562 1.80385 1.93423 1.44796 1.21347 0.90303 1.00408 1.01169 1.21550 1.02908 0.94582 0.88977 1.17686 0.87996 1.03473 0.88480 1.43325 1.16737 1.59419 1.10619 1.20261 0.80610 0.76203 0.89683 1.90676 1.70429 1.41716 1.37004 1.23383 0.99824 1.07088 0.98030 1.85516 1.11297 1.73923 1.20220 1.23237 1.04818 1.42811 0.98464 0.89741 1.26063 0.96675 0.93958 1.02324 1.70164 1.13321 1.36055 1.35067 0.84950 0.78119 0.78202 0.76981 1.18059 1.20043 1.20223 1.16660 0.87549 1.05039 0.80033 1.91542 1.80474 1.93726 1.44127 0.91391 0.91231 0.84088 0.79423 0.81437 0.72888 0.86572 0.86002 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.57 113.37 1.20 1.49 16 2 O -0.35 -7.01 10.58 -56.54 -0.60 -7.61 16 3 C 0.52 12.95 6.67 70.24 0.47 13.42 16 4 O -0.51 -15.04 16.90 19.82 0.33 -14.70 16 5 C -0.17 -3.97 5.76 -20.04 -0.12 -4.08 16 6 C 0.14 2.95 7.29 22.68 0.17 3.11 16 7 F -0.12 -2.57 16.83 44.97 0.76 -1.81 16 8 C -0.11 -1.99 10.00 22.27 0.22 -1.77 16 9 C -0.06 -1.32 8.71 22.42 0.20 -1.12 16 10 C 0.12 2.77 6.43 38.09 0.25 3.01 16 11 N -0.65 -14.96 5.31 -303.37 -1.61 -16.57 16 12 C 0.54 16.94 7.65 87.65 0.67 17.61 16 13 O -0.52 -19.82 13.02 -3.06 -0.04 -19.86 16 14 C -0.13 -4.53 6.16 71.23 0.44 -4.09 16 15 S -0.14 -6.93 20.57 -56.49 -1.16 -8.09 16 16 C -0.55 -29.30 9.50 67.96 0.65 -28.66 16 17 H 0.08 4.21 7.80 -2.91 -0.02 4.18 16 18 C 0.01 0.81 5.49 84.86 0.47 1.27 16 19 N -0.91 -53.61 13.22 21.65 0.29 -53.33 16 20 Si 1.00 41.95 29.55 68.60 2.03 43.98 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 24 C 0.13 2.94 7.30 22.80 0.17 3.11 16 25 F -0.12 -2.71 16.37 44.97 0.74 -1.98 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.17 4.18 5.77 -2.91 -0.02 4.17 16 31 H 0.43 7.23 8.45 -92.70 -0.78 6.45 16 32 H 0.12 3.57 8.14 -2.40 -0.02 3.55 16 33 H 0.12 3.63 8.14 -2.39 -0.02 3.62 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -72.76 334.29 5.90 -66.86 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.41 Total: 9.80 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 4.77 Total: 3.31 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.33 Total: -69.90 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.30 Total: -42.17 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 1.49 Total: -3.79 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -1.16 Total: -8.09 kcal Total: -72.76 5.90 -66.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362270128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.506 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds