Wall clock time and date at job start Tue Mar 31 2020 15:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99736 * 2 1 4 4 C 1.53948 * 113.73926 * 248.74274 * 3 2 1 5 5 N 1.47814 * 86.03449 * 222.08447 * 4 3 2 6 6 S 1.65600 * 134.45502 * 204.64325 * 5 4 3 7 7 O 1.42101 * 106.40273 * 23.40516 * 6 5 4 8 8 O 1.42105 * 106.40130 * 156.32636 * 6 5 4 9 9 C 1.76204 * 107.21894 * 269.86551 * 6 5 4 10 10 C 1.38634 * 119.75466 * 114.72823 * 9 6 5 11 11 C 1.37605 * 120.25831 * 179.72138 * 10 9 6 12 12 C 1.40739 * 119.77565 * 0.53016 * 11 10 9 13 13 C 1.41387 * 120.24369 * 179.76801 * 12 11 10 14 14 H 1.08000 * 120.00691 * 150.20010 * 13 12 11 15 15 C 1.39954 * 119.99910 * 330.20570 * 13 12 11 16 16 N 1.30818 * 120.00092 * 161.72979 * 15 13 12 17 17 Si 1.86795 * 119.99665 * 341.73048 * 15 13 12 18 18 H 1.48498 * 109.47200 * 95.41184 * 17 15 13 19 19 H 1.48502 * 109.47286 * 215.41131 * 17 15 13 20 20 H 1.48496 * 109.47321 * 335.41037 * 17 15 13 21 21 C 1.40678 * 119.52171 * 359.74455 * 12 11 10 22 22 C 1.37758 * 119.73171 * 359.97438 * 21 12 11 23 23 Cl 1.73605 * 119.88727 * 180.02562 * 22 21 12 24 24 C 1.47576 * 91.05175 * 24.54799 * 5 4 3 25 25 H 1.09005 * 109.46713 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47221 * 60.00158 * 1 2 3 27 27 H 1.08996 * 109.46999 * 299.99670 * 1 2 3 28 28 H 1.08996 * 112.94320 * 20.33061 * 3 2 1 29 29 H 1.09006 * 113.76698 * 336.34485 * 4 3 2 30 30 H 1.08994 * 113.77472 * 107.74698 * 4 3 2 31 31 H 1.08002 * 119.86724 * 359.97438 * 10 9 6 32 32 H 1.08001 * 120.11299 * 180.27020 * 11 10 9 33 33 H 0.96996 * 120.00272 * 179.97438 * 16 15 13 34 34 H 1.08000 * 120.13962 * 180.02562 * 21 12 11 35 35 H 1.08998 * 113.77226 * 221.15161 * 24 5 4 36 36 H 1.09002 * 113.87402 * 89.77148 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7290 1.6639 -1.3133 5 7 3.7842 2.2457 -0.4572 6 16 4.9357 3.4167 -0.6698 7 8 4.4680 4.2536 -1.7186 8 8 5.2588 3.9017 0.6262 9 6 6.3845 2.6193 -1.2781 10 6 6.8425 2.9052 -2.5549 11 6 7.9760 2.2927 -3.0383 12 6 8.6652 1.3645 -2.2357 13 6 9.8282 0.7258 -2.7242 14 1 10.6045 0.4194 -2.0387 15 6 9.9735 0.4907 -4.0962 16 7 11.1564 0.2400 -4.5952 17 14 8.4781 0.5351 -5.2148 18 1 8.3580 1.8824 -5.8274 19 1 8.6299 -0.4835 -6.2847 20 1 7.2576 0.2414 -4.4215 21 6 8.1889 1.0771 -0.9435 22 6 7.0554 1.7062 -0.4776 23 17 6.4645 1.3550 1.1165 24 6 3.3981 1.3661 0.6631 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 1.3231 2.0764 0.3487 29 1 3.0566 0.7960 -1.8858 30 1 2.1980 2.3986 -1.9186 31 1 6.3099 3.6144 -3.1712 32 1 8.3333 2.5205 -4.0317 33 1 11.2571 0.0767 -5.5460 34 1 8.7102 0.3667 -0.3190 35 1 3.4003 1.8634 1.6330 36 1 3.9219 0.4102 0.6743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451283024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:08 Heat of formation + Delta-G solvation = -69.701485 kcal Electronic energy + Delta-G solvation = -24174.223155 eV Core-core repulsion = 20391.564071 eV Total energy + Delta-G solvation = -3782.659084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.54680 -38.14404 -36.66828 -36.49458 -35.88501 -35.26423 -34.07896 -31.00978 -29.86987 -28.26684 -26.36079 -26.10784 -25.91773 -22.06527 -21.46874 -21.10260 -18.55787 -17.97265 -17.60695 -17.31115 -16.67401 -15.94353 -15.59888 -15.07416 -15.01698 -14.63154 -14.31149 -13.98183 -13.54596 -13.34724 -13.12721 -12.97194 -12.81438 -12.61120 -12.54635 -11.84193 -11.67594 -11.54765 -11.50954 -11.33058 -11.30902 -11.16277 -11.07863 -11.00803 -10.62913 -10.43230 -10.07754 -9.86144 -9.69483 -9.54230 -8.92364 -8.32907 -7.95084 -7.47721 -5.08485 0.93707 1.79661 2.28611 2.69610 2.83285 2.95370 3.02851 3.30055 3.63023 3.64497 3.92953 4.30227 4.36230 4.70597 4.71971 4.83475 4.93655 5.16091 5.18385 5.42532 5.48262 5.57453 5.64745 5.66158 5.83623 5.98724 6.13617 6.29772 6.37460 6.51952 6.61050 6.81783 6.93648 7.00806 7.02679 7.38692 7.54331 7.81313 8.11265 8.23315 9.50149 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.004375 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.843844 B = 6398.868924 C = 6774.340501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.052 3.948 4 C 0.110 3.890 5 N -1.033 6.033 6 S 2.717 3.283 7 O -0.976 6.976 8 O -0.958 6.958 9 C -0.799 4.799 10 C 0.023 3.977 11 C -0.251 4.251 12 C 0.119 3.881 13 C -0.402 4.402 14 H 0.103 0.897 15 C 0.080 3.920 16 N -0.769 5.769 17 Si 0.916 3.084 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.239 1.239 21 C -0.206 4.206 22 C 0.094 3.906 23 Cl -0.095 7.095 24 C 0.133 3.867 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.296 0.704 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 -1.521 3.993 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.008 4.008 4 C -0.016 4.016 5 N -0.871 5.871 6 S 2.814 3.186 7 O -0.967 6.967 8 O -0.949 6.949 9 C -0.893 4.893 10 C 0.003 3.997 11 C -0.271 4.271 12 C 0.114 3.886 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.145 4.145 16 N -0.390 5.390 17 Si 0.740 3.260 18 H -0.187 1.187 19 H -0.209 1.209 20 H -0.162 1.162 21 C -0.227 4.227 22 C 0.066 3.934 23 Cl -0.066 7.066 24 C 0.008 3.992 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.105 0.895 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.893 -0.753 4.109 15.468 hybrid contribution 0.060 -0.469 -0.792 0.923 sum -14.834 -1.222 3.317 15.249 Atomic orbital electron populations 1.22810 0.81091 1.02789 1.00047 1.87972 1.19717 1.27038 1.94488 1.24444 0.94294 0.85397 0.96693 1.23260 0.85983 0.97929 0.94418 1.60312 1.48565 1.54642 1.23592 1.00774 0.72266 0.72345 0.73170 1.93479 1.81119 1.63922 1.58166 1.93548 1.83894 1.77560 1.39893 1.29311 1.26682 1.26011 1.07296 1.20222 0.93672 0.94328 0.91493 1.21106 1.00794 1.03800 1.01438 1.17748 0.90676 0.89188 0.90983 1.19881 1.01074 1.28670 0.93175 0.87895 1.26420 0.97939 0.91101 0.99047 1.69653 1.24396 1.28510 1.16394 0.86205 0.82149 0.78793 0.78831 1.18686 1.20924 1.16154 1.20957 0.97884 1.05248 0.98626 1.19995 0.95189 0.94894 0.83334 1.98330 1.87861 1.94261 1.26121 1.22888 0.91236 0.94413 0.90695 0.89655 0.93868 0.93950 0.88410 0.89094 0.89662 0.86098 0.87064 0.89261 0.86334 0.89469 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.86 101.05 1.10 1.31 16 2 O -0.37 -4.10 10.73 -35.23 -0.38 -4.48 16 3 C 0.05 0.57 4.48 -25.81 -0.12 0.46 16 4 C 0.11 1.38 8.82 -2.84 -0.03 1.35 16 5 N -1.03 -16.02 4.00 -118.81 -0.48 -16.50 16 6 S 2.72 52.46 5.55 -107.50 -0.60 51.86 16 7 O -0.98 -20.18 16.91 -57.17 -0.97 -21.15 16 8 O -0.96 -20.08 16.43 -57.17 -0.94 -21.02 16 9 C -0.80 -17.08 5.93 -39.25 -0.23 -17.31 16 10 C 0.02 0.50 9.52 -39.67 -0.38 0.12 16 11 C -0.25 -5.73 7.18 -38.87 -0.28 -6.01 16 12 C 0.12 2.80 5.10 -106.83 -0.55 2.25 16 13 C -0.40 -9.75 9.57 -37.74 -0.36 -10.12 16 14 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 15 C 0.08 1.86 5.40 -17.34 -0.09 1.76 16 16 N -0.77 -18.09 13.93 55.55 0.77 -17.32 16 17 Si 0.92 18.65 24.52 -169.99 -4.17 14.48 16 18 H -0.26 -5.16 6.71 56.52 0.38 -4.78 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.24 -5.03 6.86 56.52 0.39 -4.64 16 21 C -0.21 -4.61 9.57 -38.84 -0.37 -4.98 16 22 C 0.09 2.01 6.29 -39.57 -0.25 1.76 16 23 Cl -0.09 -1.75 24.31 -51.86 -1.26 -3.01 16 24 C 0.13 1.75 7.15 -2.97 -0.02 1.73 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.87 7.89 -51.93 -0.41 0.46 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.12 2.40 7.31 -52.49 -0.38 2.02 16 32 H 0.11 2.44 4.73 -52.49 -0.25 2.19 16 33 H 0.30 6.21 8.30 -40.82 -0.34 5.87 16 34 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.23 7.63 -51.93 -0.40 0.83 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -28.47 327.76 -8.64 -37.11 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -3.99 Total: 2.73 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -1.58 Total: -27.66 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.30 Total: -33.81 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -2.28 Total: -46.64 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.17 Total: 14.48 kcal Atomic # 16 Polarization: 52.46 SS G_CDS: -0.60 Total: 51.86 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -1.26 Total: -3.01 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.47 -8.64 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451283024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.590 kcal (2) G-P(sol) polarization free energy of solvation -28.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds