Wall clock time and date at job start Tue Mar 31 2020 15:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99736 * 2 1 4 4 C 1.53948 * 113.73926 * 248.74274 * 3 2 1 5 5 N 1.47814 * 86.03449 * 222.08447 * 4 3 2 6 6 S 1.65600 * 134.45502 * 204.64325 * 5 4 3 7 7 O 1.42101 * 106.40273 * 23.40516 * 6 5 4 8 8 O 1.42105 * 106.40130 * 156.32636 * 6 5 4 9 9 C 1.76204 * 107.21894 * 269.86551 * 6 5 4 10 10 C 1.38634 * 119.75466 * 114.72823 * 9 6 5 11 11 C 1.37605 * 120.25831 * 179.72138 * 10 9 6 12 12 C 1.40739 * 119.77565 * 0.53016 * 11 10 9 13 13 C 1.41387 * 120.24369 * 179.76801 * 12 11 10 14 14 H 1.08000 * 120.00691 * 150.20010 * 13 12 11 15 15 C 1.39954 * 119.99910 * 330.20570 * 13 12 11 16 16 N 1.30818 * 120.00092 * 161.72979 * 15 13 12 17 17 Si 1.86795 * 119.99665 * 341.73048 * 15 13 12 18 18 H 1.48498 * 109.47200 * 95.41184 * 17 15 13 19 19 H 1.48502 * 109.47286 * 215.41131 * 17 15 13 20 20 H 1.48496 * 109.47321 * 335.41037 * 17 15 13 21 21 C 1.40678 * 119.52171 * 359.74455 * 12 11 10 22 22 C 1.37758 * 119.73171 * 359.97438 * 21 12 11 23 23 Cl 1.73605 * 119.88727 * 180.02562 * 22 21 12 24 24 C 1.47576 * 91.05175 * 24.54799 * 5 4 3 25 25 H 1.09005 * 109.46713 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47221 * 60.00158 * 1 2 3 27 27 H 1.08996 * 109.46999 * 299.99670 * 1 2 3 28 28 H 1.08996 * 112.94320 * 20.33061 * 3 2 1 29 29 H 1.09006 * 113.76698 * 336.34485 * 4 3 2 30 30 H 1.08994 * 113.77472 * 107.74698 * 4 3 2 31 31 H 1.08002 * 119.86724 * 359.97438 * 10 9 6 32 32 H 1.08001 * 120.11299 * 180.27020 * 11 10 9 33 33 H 0.96996 * 120.00272 * 179.97438 * 16 15 13 34 34 H 1.08000 * 120.13962 * 180.02562 * 21 12 11 35 35 H 1.08998 * 113.77226 * 221.15161 * 24 5 4 36 36 H 1.09002 * 113.87402 * 89.77148 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7290 1.6639 -1.3133 5 7 3.7842 2.2457 -0.4572 6 16 4.9357 3.4167 -0.6698 7 8 4.4680 4.2536 -1.7186 8 8 5.2588 3.9017 0.6262 9 6 6.3845 2.6193 -1.2781 10 6 6.8425 2.9052 -2.5549 11 6 7.9760 2.2927 -3.0383 12 6 8.6652 1.3645 -2.2357 13 6 9.8282 0.7258 -2.7242 14 1 10.6045 0.4194 -2.0387 15 6 9.9735 0.4907 -4.0962 16 7 11.1564 0.2400 -4.5952 17 14 8.4781 0.5351 -5.2148 18 1 8.3580 1.8824 -5.8274 19 1 8.6299 -0.4835 -6.2847 20 1 7.2576 0.2414 -4.4215 21 6 8.1889 1.0771 -0.9435 22 6 7.0554 1.7062 -0.4776 23 17 6.4645 1.3550 1.1165 24 6 3.3981 1.3661 0.6631 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 1.3231 2.0764 0.3487 29 1 3.0566 0.7960 -1.8858 30 1 2.1980 2.3986 -1.9186 31 1 6.3099 3.6144 -3.1712 32 1 8.3333 2.5205 -4.0317 33 1 11.2571 0.0767 -5.5460 34 1 8.7102 0.3667 -0.3190 35 1 3.4003 1.8634 1.6330 36 1 3.9219 0.4102 0.6743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451283024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:08 Heat of formation + Delta-G solvation = -89.637216 kcal Electronic energy + Delta-G solvation = -24175.087633 eV Core-core repulsion = 20391.564071 eV Total energy + Delta-G solvation = -3783.523563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50020 -39.87778 -38.25847 -37.52519 -37.34276 -36.85990 -35.82022 -32.76001 -31.60267 -29.23723 -27.73322 -27.27320 -26.87517 -23.79586 -23.15947 -22.13386 -20.00377 -19.71944 -18.97744 -18.51780 -17.82781 -17.41575 -17.08785 -16.34406 -16.23544 -15.93739 -15.76243 -15.21250 -14.90560 -14.80848 -14.65437 -14.61239 -14.43081 -13.66175 -13.58773 -13.45234 -13.17678 -13.10979 -12.95967 -12.83248 -12.68531 -12.50885 -12.37907 -12.10885 -12.07202 -12.04600 -11.77823 -11.50633 -11.20938 -10.48948 -10.20870 -10.00449 -9.65668 -9.21660 -6.90854 -0.55380 0.06948 0.52835 1.03114 1.19384 1.31866 1.40868 1.90061 1.99483 2.23489 2.74742 2.93435 3.09711 3.23281 3.52902 3.71784 3.96874 4.06875 4.31742 4.49934 4.51899 4.57210 4.61186 4.62702 4.64911 4.71100 4.85513 4.92626 4.95194 4.98058 5.08995 5.18786 5.29346 5.44173 5.57820 5.79119 6.00489 6.28901 6.33134 6.43465 7.82419 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.004375 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.843844 B = 6398.868924 C = 6774.340501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.393 6.393 3 C 0.072 3.928 4 C 0.101 3.899 5 N -1.035 6.035 6 S 2.736 3.264 7 O -0.988 6.988 8 O -0.976 6.976 9 C -0.806 4.806 10 C 0.017 3.983 11 C -0.264 4.264 12 C 0.110 3.890 13 C -0.437 4.437 14 H 0.079 0.921 15 C 0.055 3.945 16 N -0.801 5.801 17 Si 0.958 3.042 18 H -0.249 1.249 19 H -0.265 1.265 20 H -0.251 1.251 21 C -0.223 4.223 22 C 0.088 3.912 23 Cl -0.068 7.068 24 C 0.121 3.879 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.307 0.693 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.256 -1.297 4.093 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.311 6.311 3 C 0.011 3.989 4 C -0.024 4.024 5 N -0.876 5.876 6 S 2.831 3.169 7 O -0.979 6.979 8 O -0.967 6.967 9 C -0.897 4.897 10 C -0.003 4.003 11 C -0.284 4.284 12 C 0.106 3.894 13 C -0.463 4.463 14 H 0.097 0.903 15 C -0.167 4.167 16 N -0.423 5.423 17 Si 0.779 3.221 18 H -0.174 1.174 19 H -0.190 1.190 20 H -0.175 1.175 21 C -0.243 4.243 22 C 0.060 3.940 23 Cl -0.039 7.039 24 C -0.004 4.004 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.142 0.858 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.158 0.842 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.115 0.885 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.893 -0.543 4.198 18.387 hybrid contribution 0.803 -0.547 -0.633 1.159 sum -17.090 -1.090 3.565 17.492 Atomic orbital electron populations 1.23045 0.79124 1.03983 1.01293 1.87947 1.21853 1.26830 1.94449 1.24222 0.93614 0.86292 0.94755 1.23576 0.85161 0.98239 0.95391 1.60061 1.47437 1.54663 1.25438 1.00155 0.71824 0.72512 0.72365 1.93458 1.81051 1.64770 1.58634 1.93520 1.84367 1.78399 1.40410 1.29909 1.27956 1.24858 1.06981 1.20520 0.93411 0.94363 0.92006 1.21269 1.01260 1.03944 1.01894 1.17895 0.90605 0.89182 0.91692 1.19831 1.01503 1.31171 0.93762 0.90291 1.26953 0.99795 0.90473 0.99481 1.69647 1.25490 1.29690 1.17448 0.85584 0.78955 0.79819 0.77749 1.17397 1.19034 1.17496 1.21114 0.98552 1.05970 0.98695 1.20135 0.94755 0.94479 0.84613 1.98332 1.87412 1.94071 1.24080 1.23151 0.92819 0.93768 0.90648 0.88626 0.92755 0.92545 0.85759 0.89158 0.87988 0.84190 0.86451 0.88108 0.85793 0.88473 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.86 113.37 1.23 1.47 16 2 O -0.39 -7.37 10.73 -148.98 -1.60 -8.97 16 3 C 0.07 1.33 4.48 31.25 0.14 1.47 16 4 C 0.10 2.24 8.82 86.44 0.76 3.01 16 5 N -1.03 -29.60 4.00 -533.64 -2.14 -31.73 16 6 S 2.74 100.61 5.55 -56.49 -0.31 100.30 16 7 O -0.99 -38.77 16.91 -128.00 -2.17 -40.94 16 8 O -0.98 -39.22 16.43 -128.00 -2.10 -41.33 16 9 C -0.81 -33.60 5.93 22.48 0.13 -33.47 16 10 C 0.02 0.71 9.52 22.21 0.21 0.93 16 11 C -0.26 -11.99 7.18 22.73 0.16 -11.83 16 12 C 0.11 5.32 5.10 -21.30 -0.11 5.21 16 13 C -0.44 -22.03 9.57 23.46 0.22 -21.80 16 14 H 0.08 4.21 8.06 -2.91 -0.02 4.19 16 15 C 0.05 2.61 5.40 85.26 0.46 3.07 16 16 N -0.80 -38.47 13.93 21.83 0.30 -38.16 16 17 Si 0.96 37.87 24.52 68.60 1.68 39.55 16 18 H -0.25 -9.30 6.71 99.48 0.67 -8.63 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 20 H -0.25 -10.38 6.86 99.48 0.68 -9.69 16 21 C -0.22 -10.08 9.57 22.75 0.22 -9.86 16 22 C 0.09 3.73 6.29 22.27 0.14 3.87 16 23 Cl -0.07 -2.44 24.31 -2.72 -0.07 -2.50 16 24 C 0.12 2.87 7.15 86.49 0.62 3.48 16 25 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.12 1.67 7.89 -2.39 -0.02 1.65 16 29 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.14 5.33 7.31 -2.91 -0.02 5.31 16 32 H 0.12 5.09 4.73 -2.91 -0.01 5.08 16 33 H 0.31 12.99 8.30 -92.71 -0.77 12.22 16 34 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 35 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 2.16 7.63 -2.39 -0.02 2.14 16 Total: -1.00 -60.63 327.76 -1.15 -61.78 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.05 Total: 16.45 kcal Atomic # 6 Polarization: -58.64 SS G_CDS: 4.19 Total: -54.45 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -1.83 Total: -69.90 kcal Atomic # 8 Polarization: -85.37 SS G_CDS: -5.87 Total: -91.23 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.68 Total: 39.55 kcal Atomic # 16 Polarization: 100.61 SS G_CDS: -0.31 Total: 100.30 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.07 Total: -2.50 kcal Total: -60.63 -1.15 -61.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451283024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.853 kcal (2) G-P(sol) polarization free energy of solvation -60.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds