Wall clock time and date at job start Tue Mar 31 2020 16:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99797 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00141 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00134 * 3 2 1 7 7 C 1.38802 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00072 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99767 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46925 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99978 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99564 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99472 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.27393 * 34.29959 * 14 13 11 16 16 C 1.54345 * 110.30145 * 156.37353 * 14 13 11 17 17 C 1.54344 * 102.39037 * 92.56262 * 16 14 13 18 18 C 1.51388 * 105.17124 * 26.36266 * 17 16 14 19 19 C 1.38501 * 130.33005 * 162.78867 * 18 17 16 20 20 C 1.38298 * 120.27446 * 180.02562 * 19 18 17 21 21 F 1.35094 * 120.05587 * 179.97438 * 20 19 18 22 22 C 1.38616 * 119.88853 * 0.02562 * 20 19 18 23 23 F 1.35102 * 120.07910 * 179.97438 * 22 20 19 24 24 C 1.38466 * 119.84153 * 0.02562 * 22 20 19 25 25 F 1.35090 * 119.90962 * 179.97438 * 24 22 20 26 26 C 1.38455 * 109.78350 * 342.82103 * 18 17 16 27 27 H 0.97004 * 120.00251 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46771 * 300.00145 * 10 9 7 29 29 H 1.09000 * 109.46686 * 60.00520 * 10 9 7 30 30 H 0.96999 * 120.00378 * 359.97438 * 13 11 10 31 31 H 1.08998 * 110.82082 * 210.78868 * 16 14 13 32 32 H 1.09003 * 110.82080 * 334.13782 * 16 14 13 33 33 H 1.09002 * 110.30439 * 145.28465 * 17 16 14 34 34 H 1.08994 * 110.30336 * 267.34119 * 17 16 14 35 35 H 1.07991 * 119.86626 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0007 14 6 2.3305 -7.7150 0.0008 15 1 1.4073 -7.7726 -0.5758 16 6 3.3850 -8.6818 -0.5787 17 6 4.1336 -9.1522 0.6864 18 6 3.1325 -9.0141 1.8136 19 6 3.1297 -9.5681 3.0829 20 6 2.0939 -9.2989 3.9589 21 9 2.0954 -9.8421 5.1959 22 6 1.0537 -8.4715 3.5653 23 9 0.0397 -8.2063 4.4177 24 6 1.0559 -7.9184 2.2959 25 9 0.0426 -7.1124 1.9106 26 6 2.0942 -8.1873 1.4194 27 1 -0.4851 -0.8401 0.0004 28 1 3.1245 -3.7313 -0.8905 29 1 3.1244 -3.7313 0.8895 30 1 3.8011 -6.1834 0.0004 31 1 2.9057 -9.5224 -1.0804 32 1 4.0576 -8.1590 -1.2587 33 1 4.4411 -10.1925 0.5791 34 1 5.0015 -8.5189 0.8698 35 1 3.9392 -10.2137 3.3897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456466356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:46 Heat of formation + Delta-G solvation = -173.209761 kcal Electronic energy + Delta-G solvation = -25480.839844 eV Core-core repulsion = 21154.268413 eV Total energy + Delta-G solvation = -4326.571431 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.91172 -50.28717 -49.60061 -41.67956 -40.14404 -37.02440 -34.76245 -34.38779 -32.16096 -30.82028 -29.88368 -27.65504 -27.00034 -24.45761 -23.05266 -22.13038 -21.78855 -20.45106 -19.33097 -19.03607 -18.38093 -18.09939 -17.94165 -17.53731 -17.08856 -16.65860 -16.50061 -16.41689 -16.07634 -15.79407 -15.74863 -15.52753 -15.18574 -15.16172 -14.82349 -14.47957 -14.12231 -13.87739 -13.58935 -13.32531 -13.05313 -13.01749 -12.76986 -12.49818 -12.18719 -11.95561 -11.92766 -11.55551 -11.12877 -11.07137 -10.36458 -10.32204 -10.02663 -9.83785 -8.93975 -8.88116 -6.28967 -0.51777 -0.41808 1.19569 1.50229 1.51090 1.61277 1.77130 1.85645 2.19243 2.28073 2.35692 2.90556 2.97128 3.01585 3.12301 3.13693 3.25810 3.69637 3.74996 3.90652 4.09889 4.16039 4.25505 4.34217 4.36334 4.45047 4.48082 4.69575 4.76409 4.95977 5.07368 5.14197 5.18099 5.40434 5.47523 5.63471 6.13007 6.42124 7.05385 7.17467 8.49461 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.003105 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.379371 B = 9015.412540 C = 9781.919583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.020 4.020 3 Si 1.142 2.858 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.612 4.612 8 H 0.076 0.924 9 S -0.201 6.201 10 C -0.107 4.107 11 C 0.526 3.474 12 O -0.549 6.549 13 N -0.700 5.700 14 C 0.183 3.817 15 H 0.076 0.924 16 C -0.111 4.111 17 C -0.074 4.074 18 C -0.015 4.015 19 C -0.110 4.110 20 C 0.104 3.896 21 F -0.122 7.122 22 C -0.010 4.010 23 F -0.138 7.138 24 C 0.097 3.903 25 F -0.133 7.133 26 C -0.153 4.153 27 H 0.260 0.740 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.422 0.578 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.143 -25.612 1.479 30.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.223 4.223 3 Si 0.960 3.040 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.759 4.759 8 H 0.094 0.906 9 S 0.026 5.974 10 C -0.259 4.259 11 C 0.312 3.688 12 O -0.425 6.425 13 N -0.355 5.355 14 C 0.078 3.922 15 H 0.094 0.906 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.017 4.017 19 C -0.129 4.129 20 C 0.084 3.916 21 F -0.101 7.101 22 C -0.031 4.031 23 F -0.117 7.117 24 C 0.076 3.924 25 F -0.112 7.112 26 C -0.155 4.155 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.125 0.875 30 H 0.260 0.740 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 14.884 -24.328 1.524 28.560 hybrid contribution 0.183 -0.708 0.873 1.139 sum 15.067 -25.036 2.397 29.318 Atomic orbital electron populations 1.70860 1.08098 1.30022 1.46063 1.27866 0.96293 1.06487 0.91685 0.82649 0.74184 0.69321 0.77830 1.18454 1.20219 1.19909 1.24085 0.96506 0.92716 1.62628 0.90554 1.85175 1.13415 1.01376 1.97472 1.23213 1.02017 0.93641 1.07003 1.20137 0.86600 0.86762 0.75342 1.90760 1.17193 1.85809 1.48741 1.45730 1.10350 1.03844 1.75596 1.20458 1.00293 0.81883 0.89613 0.90632 1.22701 0.96016 0.98134 0.97944 1.21364 0.95701 1.06246 0.87717 1.20906 0.94478 0.91630 0.94637 1.20894 0.98142 1.02295 0.91540 1.17357 0.95378 0.96477 0.82429 1.91555 1.96311 1.83464 1.38734 1.17839 0.90288 1.06028 0.88960 1.91496 1.58005 1.93059 1.69101 1.17588 0.88326 0.94028 0.92457 1.91630 1.58096 1.70497 1.90941 1.21208 0.94251 1.01348 0.98702 0.92907 0.86497 0.87508 0.73968 0.87181 0.86411 0.85369 0.86222 0.78554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.11 13.67 21.65 0.30 -58.82 16 2 C -0.02 -1.20 5.49 84.86 0.47 -0.73 16 3 Si 1.14 49.82 29.92 68.60 2.05 51.87 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.61 -35.55 9.50 67.95 0.65 -34.91 16 8 H 0.08 4.14 7.80 -2.91 -0.02 4.12 16 9 S -0.20 -11.24 19.60 -56.49 -1.11 -12.34 16 10 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 11 C 0.53 18.79 7.84 87.66 0.69 19.48 16 12 O -0.55 -25.24 13.75 -3.03 -0.04 -25.29 16 13 N -0.70 -15.32 5.09 -442.89 -2.26 -17.58 16 14 C 0.18 3.46 3.17 44.92 0.14 3.60 16 15 H 0.08 1.91 7.60 -2.39 -0.02 1.90 16 16 C -0.11 -0.63 6.66 31.51 0.21 -0.42 16 17 C -0.07 -0.17 6.77 30.52 0.21 0.04 16 18 C -0.02 -0.18 6.14 -19.53 -0.12 -0.30 16 19 C -0.11 -1.28 10.02 22.35 0.22 -1.06 16 20 C 0.10 2.14 7.30 22.37 0.16 2.30 16 21 F -0.12 -2.61 17.18 44.97 0.77 -1.83 16 22 C -0.01 -0.29 7.31 22.41 0.16 -0.13 16 23 F -0.14 -4.62 17.10 44.97 0.77 -3.85 16 24 C 0.10 2.96 7.29 22.39 0.16 3.12 16 25 F -0.13 -5.43 15.36 44.97 0.69 -4.74 16 26 C -0.15 -3.28 5.75 -19.53 -0.11 -3.39 16 27 H 0.26 17.55 7.13 -92.70 -0.66 16.89 16 28 H 0.12 3.99 8.14 -2.40 -0.02 3.97 16 29 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 30 H 0.42 5.58 8.61 -92.71 -0.80 4.78 16 31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.12 0.24 8.06 -2.39 -0.02 0.22 16 33 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -88.78 330.37 4.94 -83.84 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 0.48 Total: 4.88 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.28 Total: -16.15 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -1.96 Total: -76.40 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.04 Total: -25.29 kcal Atomic # 9 Polarization: -12.65 SS G_CDS: 2.23 Total: -10.42 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.05 Total: 51.87 kcal Atomic # 16 Polarization: -11.24 SS G_CDS: -1.11 Total: -12.34 kcal Total: -88.78 4.94 -83.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456466356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.365 kcal (2) G-P(sol) polarization free energy of solvation -88.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds