Wall clock time and date at job start Tue Mar 31 2020 17:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47227 * 357.49620 * 3 2 1 5 5 C 1.36877 * 120.00083 * 84.31372 * 4 3 2 6 6 H 1.07999 * 120.00504 * 166.47406 * 5 4 3 7 7 C 1.39040 * 119.99997 * 346.46787 * 5 4 3 8 8 N 1.31374 * 120.00216 * 359.09513 * 7 5 4 9 9 Si 1.86798 * 120.00260 * 179.09024 * 7 5 4 10 10 H 1.48497 * 109.47054 * 60.00209 * 9 7 5 11 11 H 1.48500 * 109.47440 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46903 * 300.00532 * 9 7 5 13 13 C 1.34781 * 119.99995 * 264.30872 * 4 3 2 14 14 O 1.21618 * 119.99669 * 183.98078 * 13 4 3 15 15 C 1.47516 * 119.99840 * 3.98598 * 13 4 3 16 16 C 1.39678 * 120.18866 * 295.26793 * 15 13 4 17 17 C 1.37952 * 119.89780 * 180.26004 * 16 15 13 18 18 Cl 1.73611 * 119.86197 * 179.78807 * 17 16 15 19 19 C 1.38617 * 120.28010 * 359.76788 * 17 16 15 20 20 C 1.38114 * 120.38025 * 0.02562 * 19 17 16 21 21 C 1.38684 * 120.09723 * 359.97323 * 20 19 17 22 22 N 1.39865 * 120.13902 * 179.97438 * 21 20 19 23 23 C 1.35144 * 127.39947 * 354.36738 * 22 21 20 24 24 N 1.30715 * 107.26831 * 179.97438 * 23 22 21 25 25 N 1.28421 * 110.65286 * 0.02562 * 24 23 22 26 26 N 1.28942 * 110.22141 * 359.97438 * 25 24 23 27 27 H 4.40640 * 5.51394 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47084 * 237.49638 * 3 2 1 29 29 H 1.08999 * 109.47096 * 117.49782 * 3 2 1 30 30 H 0.96995 * 120.00571 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.05201 * 0.02915 * 16 15 13 32 32 H 1.08006 * 119.81441 * 179.97438 * 19 17 16 33 33 H 1.08004 * 119.95274 * 180.02562 * 20 19 17 34 34 H 1.08000 * 126.36440 * 0.03130 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3790 0.0603 5 6 3.2528 -2.1142 -1.0882 6 1 3.8097 -3.0395 -1.0824 7 6 2.6552 -1.6699 -2.2624 8 7 1.9627 -0.5535 -2.2654 9 14 2.8372 -2.6602 -3.8358 10 1 2.2684 -4.0172 -3.6351 11 1 2.1124 -1.9772 -4.9373 12 1 4.2759 -2.7733 -4.1858 13 6 3.4690 -1.9243 1.2468 14 8 3.9429 -3.0435 1.2897 15 6 3.2597 -1.1636 2.4932 16 6 3.9736 0.0143 2.7255 17 6 3.7770 0.7181 3.8956 18 17 4.6689 2.1791 4.1858 19 6 2.8701 0.2640 4.8405 20 6 2.1549 -0.8970 4.6207 21 6 2.3401 -1.6168 3.4499 22 7 1.6167 -2.7929 3.2267 23 6 0.7828 -3.4192 4.0862 24 7 0.3191 -4.4777 3.4752 25 7 0.8029 -4.5640 2.2887 26 7 1.6009 -3.5773 2.0599 27 1 -1.0498 -0.0004 -0.0002 28 1 3.0091 0.5530 0.8667 29 1 3.0092 0.4753 -0.9116 30 1 1.5461 -0.2433 -3.0846 31 1 4.6811 0.3715 1.9919 32 1 2.7225 0.8207 5.7541 33 1 1.4498 -1.2443 5.3614 34 1 0.5432 -3.1033 5.0908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490975013.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:26 Heat of formation + Delta-G solvation = 204.831161 kcal Electronic energy + Delta-G solvation = -25993.572861 eV Core-core repulsion = 22151.959956 eV Total energy + Delta-G solvation = -3841.612905 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.88559 -40.06910 -38.12146 -36.74709 -35.34854 -34.72872 -32.34140 -31.93137 -31.48534 -31.00891 -29.90888 -26.61624 -25.51152 -24.72731 -23.88834 -22.20179 -21.89906 -19.91836 -18.41585 -17.99848 -17.17337 -16.59614 -16.30437 -16.10618 -15.76810 -15.55522 -14.77352 -14.33117 -14.17178 -13.92272 -13.69504 -13.22830 -12.99028 -12.74923 -12.56609 -12.39433 -12.23014 -11.88640 -11.62170 -11.38938 -11.14028 -11.09683 -10.88616 -10.67508 -10.58237 -10.40160 -10.14865 -9.58645 -9.38218 -9.20772 -8.83318 -8.62189 -8.49402 -8.02628 -6.38038 -3.94983 0.31480 0.88027 1.69139 1.84867 2.05468 2.56954 3.09510 3.20874 3.23504 3.27729 3.55657 3.86718 4.04743 4.12504 4.16614 4.24502 4.44582 4.61683 4.82816 4.95353 5.02036 5.15577 5.28098 5.43097 5.50352 5.63607 5.70638 5.71774 5.90178 6.05935 6.18904 6.26541 6.66002 6.86578 7.05691 7.43939 7.85408 8.29947 8.72902 8.84414 8.99801 9.18697 9.71734 10.54032 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.005922 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.853081 B = 4727.101458 C = 6337.769876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.091 4.091 3 C 0.223 3.777 4 N -0.418 5.418 5 C -0.290 4.290 6 H 0.110 0.890 7 C 0.029 3.971 8 N -0.869 5.869 9 Si 0.935 3.065 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.479 3.521 14 O -0.557 6.557 15 C -0.058 4.058 16 C -0.074 4.074 17 C -0.031 4.031 18 Cl -0.061 7.061 19 C -0.090 4.090 20 C -0.113 4.113 21 C 0.161 3.839 22 N -0.330 5.330 23 C 0.206 3.794 24 N -0.336 5.336 25 N -0.055 5.055 26 N 0.005 4.995 27 H 0.195 0.805 28 H 0.057 0.943 29 H 0.130 0.870 30 H 0.272 0.728 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 7.716 13.891 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.093 4.093 3 C 0.100 3.900 4 N -0.134 5.134 5 C -0.417 4.417 6 H 0.128 0.872 7 C -0.174 4.174 8 N -0.508 5.508 9 Si 0.761 3.239 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.267 3.733 14 O -0.439 6.439 15 C -0.065 4.065 16 C -0.094 4.094 17 C -0.059 4.059 18 Cl -0.032 7.032 19 C -0.110 4.110 20 C -0.134 4.134 21 C 0.066 3.934 22 N -0.120 5.120 23 C -0.091 4.091 24 N -0.183 5.183 25 N -0.050 5.050 26 N 0.020 4.980 27 H 0.212 0.788 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.083 0.917 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.280 6.386 12.589 14.118 hybrid contribution -0.199 0.599 -0.106 0.640 sum 0.081 6.984 12.482 14.304 Atomic orbital electron populations 1.24165 0.95320 1.02285 1.08173 1.22952 0.94100 0.98129 0.94103 1.18813 0.84718 0.84297 1.02123 1.43659 1.53721 1.10878 1.05174 1.19788 1.30900 1.06421 0.84580 0.87247 1.25395 0.95186 0.96788 1.00068 1.69887 1.31928 1.20537 1.28465 0.85841 0.78607 0.79699 0.79758 1.19584 1.20837 1.19681 1.17310 0.87436 0.86519 0.82053 1.90689 1.48887 1.19043 1.85320 1.20157 0.94768 0.94920 0.96636 1.21192 0.99254 0.92660 0.96249 1.20865 0.97774 0.90830 0.96386 1.98381 1.74190 1.34693 1.95951 1.20821 0.95184 0.95695 0.99280 1.20657 1.01816 0.95425 0.95505 1.17460 0.94375 0.85438 0.96098 1.49033 1.31667 1.19277 1.12066 1.27286 0.91283 0.91048 0.99499 1.74369 1.24087 1.17798 1.02026 1.78146 1.04578 1.14479 1.07776 1.83429 1.14413 0.98910 1.01263 0.78813 0.92570 0.85306 0.91685 0.83131 0.83524 0.83791 0.75022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.05 19.25 29.55 0.57 -5.48 16 2 C -0.09 -2.06 11.11 -37.12 -0.41 -2.47 16 3 C 0.22 4.84 5.08 -6.83 -0.03 4.81 16 4 N -0.42 -10.19 2.59 -119.13 -0.31 -10.49 16 5 C -0.29 -7.71 9.47 -15.00 -0.14 -7.85 16 6 H 0.11 3.08 7.22 -52.49 -0.38 2.70 16 7 C 0.03 0.73 5.35 -17.45 -0.09 0.63 16 8 N -0.87 -21.80 8.05 55.50 0.45 -21.35 16 9 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.48 11.26 5.30 -12.48 -0.07 11.19 16 14 O -0.56 -15.03 15.12 5.26 0.08 -14.95 16 15 C -0.06 -1.07 4.81 -104.83 -0.50 -1.57 16 16 C -0.07 -1.09 7.42 -39.15 -0.29 -1.38 16 17 C -0.03 -0.37 6.31 -39.55 -0.25 -0.62 16 18 Cl -0.06 -0.64 28.94 -51.86 -1.50 -2.14 16 19 C -0.09 -0.88 9.81 -39.49 -0.39 -1.27 16 20 C -0.11 -1.21 9.48 -39.46 -0.37 -1.58 16 21 C 0.16 2.59 6.71 -83.28 -0.56 2.03 16 22 N -0.33 -5.93 3.83 -11.52 -0.04 -5.97 16 23 C 0.21 2.91 12.15 -90.10 -1.09 1.82 16 24 N -0.34 -6.05 12.15 29.65 0.36 -5.69 16 25 N -0.05 -1.21 13.39 60.35 0.81 -0.40 16 26 N 0.00 0.11 10.25 60.35 0.62 0.73 16 27 H 0.19 3.54 7.80 -54.10 -0.42 3.11 16 28 H 0.06 1.04 4.72 -51.93 -0.25 0.79 16 29 H 0.13 2.94 6.27 -51.93 -0.33 2.61 16 30 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.15 2.12 7.72 -52.48 -0.41 1.72 16 32 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.14 0.92 6.90 -52.48 -0.36 0.56 16 34 H 0.23 1.64 7.22 -52.49 -0.38 1.26 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -33.52 321.68 -5.43 -38.96 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -2.08 Total: 2.67 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.64 Total: -1.73 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 1.88 Total: -43.18 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.95 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.52 -5.43 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975013.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.787 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds