Wall clock time and date at job start Tue Mar 31 2020 17:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47227 * 357.49620 * 3 2 1 5 5 C 1.36877 * 120.00083 * 84.31372 * 4 3 2 6 6 H 1.07999 * 120.00504 * 166.47406 * 5 4 3 7 7 C 1.39040 * 119.99997 * 346.46787 * 5 4 3 8 8 N 1.31374 * 120.00216 * 359.09513 * 7 5 4 9 9 Si 1.86798 * 120.00260 * 179.09024 * 7 5 4 10 10 H 1.48497 * 109.47054 * 60.00209 * 9 7 5 11 11 H 1.48500 * 109.47440 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46903 * 300.00532 * 9 7 5 13 13 C 1.34781 * 119.99995 * 264.30872 * 4 3 2 14 14 O 1.21618 * 119.99669 * 183.98078 * 13 4 3 15 15 C 1.47516 * 119.99840 * 3.98598 * 13 4 3 16 16 C 1.39678 * 120.18866 * 295.26793 * 15 13 4 17 17 C 1.37952 * 119.89780 * 180.26004 * 16 15 13 18 18 Cl 1.73611 * 119.86197 * 179.78807 * 17 16 15 19 19 C 1.38617 * 120.28010 * 359.76788 * 17 16 15 20 20 C 1.38114 * 120.38025 * 0.02562 * 19 17 16 21 21 C 1.38684 * 120.09723 * 359.97323 * 20 19 17 22 22 N 1.39865 * 120.13902 * 179.97438 * 21 20 19 23 23 C 1.35144 * 127.39947 * 354.36738 * 22 21 20 24 24 N 1.30715 * 107.26831 * 179.97438 * 23 22 21 25 25 N 1.28421 * 110.65286 * 0.02562 * 24 23 22 26 26 N 1.28942 * 110.22141 * 359.97438 * 25 24 23 27 27 H 4.40640 * 5.51394 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47084 * 237.49638 * 3 2 1 29 29 H 1.08999 * 109.47096 * 117.49782 * 3 2 1 30 30 H 0.96995 * 120.00571 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.05201 * 0.02915 * 16 15 13 32 32 H 1.08006 * 119.81441 * 179.97438 * 19 17 16 33 33 H 1.08004 * 119.95274 * 180.02562 * 20 19 17 34 34 H 1.08000 * 126.36440 * 0.03130 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3790 0.0603 5 6 3.2528 -2.1142 -1.0882 6 1 3.8097 -3.0395 -1.0824 7 6 2.6552 -1.6699 -2.2624 8 7 1.9627 -0.5535 -2.2654 9 14 2.8372 -2.6602 -3.8358 10 1 2.2684 -4.0172 -3.6351 11 1 2.1124 -1.9772 -4.9373 12 1 4.2759 -2.7733 -4.1858 13 6 3.4690 -1.9243 1.2468 14 8 3.9429 -3.0435 1.2897 15 6 3.2597 -1.1636 2.4932 16 6 3.9736 0.0143 2.7255 17 6 3.7770 0.7181 3.8956 18 17 4.6689 2.1791 4.1858 19 6 2.8701 0.2640 4.8405 20 6 2.1549 -0.8970 4.6207 21 6 2.3401 -1.6168 3.4499 22 7 1.6167 -2.7929 3.2267 23 6 0.7828 -3.4192 4.0862 24 7 0.3191 -4.4777 3.4752 25 7 0.8029 -4.5640 2.2887 26 7 1.6009 -3.5773 2.0599 27 1 -1.0498 -0.0004 -0.0002 28 1 3.0091 0.5530 0.8667 29 1 3.0092 0.4753 -0.9116 30 1 1.5461 -0.2433 -3.0846 31 1 4.6811 0.3715 1.9919 32 1 2.7225 0.8207 5.7541 33 1 1.4498 -1.2443 5.3614 34 1 0.5432 -3.1033 5.0908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490975013.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:26 Heat of formation + Delta-G solvation = 183.141644 kcal Electronic energy + Delta-G solvation = -25994.513389 eV Core-core repulsion = 22151.959956 eV Total energy + Delta-G solvation = -3842.553433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.23464 -41.40374 -39.61938 -37.72946 -37.13860 -35.98293 -34.00954 -33.37289 -33.17484 -32.33960 -31.06191 -28.37798 -27.09263 -26.04787 -25.23902 -23.60890 -23.06515 -21.38251 -19.82490 -19.60259 -18.63325 -18.28754 -17.65024 -17.28887 -17.20167 -16.72424 -16.33750 -16.01615 -15.57118 -15.34999 -14.90191 -14.57542 -14.36555 -14.22259 -14.14216 -13.78146 -13.48731 -13.21445 -13.19139 -12.92157 -12.76393 -12.53518 -12.21244 -12.04505 -12.02446 -11.94554 -11.55550 -11.41890 -11.09796 -10.63966 -10.54216 -10.16772 -9.87491 -9.63428 -8.27369 -5.94454 -0.83069 -0.14055 0.47713 0.78156 1.00344 1.23944 1.34079 1.37224 1.45974 1.80701 2.04207 2.28341 2.35346 2.42257 2.96289 2.98120 3.10968 3.32181 3.64831 3.71294 3.78289 3.88253 4.01385 4.16062 4.27191 4.31160 4.51635 4.60666 4.65596 4.90209 5.00241 5.11598 5.24458 5.39624 5.41717 5.57533 5.97440 6.40953 7.09582 7.13433 7.34309 7.35467 7.90419 8.61793 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.005922 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.853081 B = 4727.101458 C = 6337.769876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.120 4.120 3 C 0.230 3.770 4 N -0.435 5.435 5 C -0.327 4.327 6 H 0.076 0.924 7 C 0.001 3.999 8 N -0.877 5.877 9 Si 0.985 3.015 10 H -0.286 1.286 11 H -0.268 1.268 12 H -0.265 1.265 13 C 0.486 3.514 14 O -0.606 6.606 15 C -0.097 4.097 16 C -0.083 4.083 17 C -0.026 4.026 18 Cl -0.042 7.042 19 C -0.062 4.062 20 C -0.086 4.086 21 C 0.137 3.863 22 N -0.333 5.333 23 C 0.236 3.764 24 N -0.358 5.358 25 N -0.086 5.086 26 N -0.064 5.064 27 H 0.223 0.777 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.272 0.728 31 H 0.144 0.856 32 H 0.199 0.801 33 H 0.204 0.796 34 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 10.231 18.062 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.122 4.122 3 C 0.108 3.892 4 N -0.152 5.152 5 C -0.455 4.455 6 H 0.094 0.906 7 C -0.200 4.200 8 N -0.516 5.516 9 Si 0.809 3.191 10 H -0.212 1.212 11 H -0.193 1.193 12 H -0.190 1.190 13 C 0.275 3.725 14 O -0.492 6.492 15 C -0.103 4.103 16 C -0.103 4.103 17 C -0.053 4.053 18 Cl -0.013 7.013 19 C -0.081 4.081 20 C -0.107 4.107 21 C 0.043 3.957 22 N -0.124 5.124 23 C -0.059 4.059 24 N -0.206 5.206 25 N -0.081 5.081 26 N -0.049 5.049 27 H 0.240 0.760 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.216 0.784 33 H 0.221 0.779 34 H 0.324 0.676 Dipole moment (debyes) X Y Z Total from point charges -1.005 8.957 16.769 19.038 hybrid contribution 0.237 -0.072 -1.062 1.091 sum -0.768 8.885 15.707 18.063 Atomic orbital electron populations 1.24914 0.96238 1.01288 1.07259 1.23351 0.94834 0.99041 0.94960 1.18740 0.84644 0.83230 1.02548 1.43700 1.54629 1.11734 1.05088 1.19540 1.32831 1.06318 0.86761 0.90636 1.25926 0.94788 0.97633 1.01694 1.70004 1.32029 1.20842 1.28707 0.85115 0.78836 0.77758 0.77369 1.21246 1.19272 1.18992 1.18058 0.84797 0.86192 0.83451 1.90625 1.50425 1.21476 1.86628 1.19774 0.98375 0.96711 0.95413 1.21089 0.99218 0.92101 0.97866 1.20986 0.97883 0.90921 0.95525 1.98401 1.73891 1.33373 1.95662 1.21483 0.92204 0.94706 0.99698 1.21329 1.01491 0.94062 0.93777 1.18005 0.94586 0.85563 0.97551 1.49139 1.32232 1.19614 1.11432 1.28653 0.87970 0.88616 1.00688 1.74251 1.25115 1.19965 1.01308 1.78117 1.05177 1.15055 1.09757 1.83388 1.16277 1.00568 1.04654 0.76035 0.89580 0.87103 0.91741 0.83804 0.78419 0.77934 0.67615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.90 19.25 74.32 1.43 -10.47 16 2 C -0.12 -5.53 11.11 31.13 0.35 -5.18 16 3 C 0.23 10.41 5.08 84.58 0.43 10.84 16 4 N -0.43 -22.57 2.59 -649.07 -1.68 -24.25 16 5 C -0.33 -18.80 9.47 84.10 0.80 -18.00 16 6 H 0.08 4.71 7.22 -2.91 -0.02 4.69 16 7 C 0.00 0.07 5.35 84.95 0.45 0.52 16 8 N -0.88 -45.62 8.05 21.68 0.17 -45.44 16 9 Si 0.98 44.24 29.55 68.60 2.03 46.26 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.49 24.18 5.30 86.69 0.46 24.64 16 14 O -0.61 -35.35 15.12 -4.09 -0.06 -35.41 16 15 C -0.10 -3.54 4.81 -20.00 -0.10 -3.64 16 16 C -0.08 -2.35 7.42 22.55 0.17 -2.19 16 17 C -0.03 -0.50 6.31 22.29 0.14 -0.36 16 18 Cl -0.04 -0.72 28.94 -2.72 -0.08 -0.80 16 19 C -0.06 -0.79 9.81 22.33 0.22 -0.57 16 20 C -0.09 -1.28 9.48 22.35 0.21 -1.07 16 21 C 0.14 4.04 6.71 38.45 0.26 4.30 16 22 N -0.33 -11.50 3.83 -190.35 -0.73 -12.23 16 23 C 0.24 5.83 12.15 180.17 2.19 8.02 16 24 N -0.36 -12.56 12.15 -60.10 -0.73 -13.29 16 25 N -0.09 -3.92 13.39 37.02 0.50 -3.43 16 26 N -0.06 -3.05 10.25 37.02 0.38 -2.67 16 27 H 0.22 7.75 7.80 -4.43 -0.03 7.72 16 28 H 0.09 3.25 4.72 -2.39 -0.01 3.23 16 29 H 0.11 5.33 6.27 -2.39 -0.01 5.32 16 30 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.14 4.13 7.72 -2.91 -0.02 4.10 16 32 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 33 H 0.20 0.62 6.90 -2.91 -0.02 0.60 16 34 H 0.31 1.96 7.22 -2.91 -0.02 1.94 16 Total: -1.00 -85.50 321.68 7.98 -77.52 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.18 Total: 6.90 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 7.01 Total: 6.84 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -2.09 Total: -101.32 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.06 Total: -35.41 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -85.50 7.98 -77.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975013.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.664 kcal (2) G-P(sol) polarization free energy of solvation -85.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds