Wall clock time and date at job start Tue Mar 31 2020 16:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47363 * 118.81505 * 3 2 1 5 5 C 1.36955 * 119.99952 * 97.07893 * 4 3 2 6 6 H 1.08005 * 119.99726 * 160.73448 * 5 4 3 7 7 C 1.38986 * 120.00282 * 340.74064 * 5 4 3 8 8 N 1.31408 * 119.99876 * 343.10755 * 7 5 4 9 9 Si 1.86800 * 120.00256 * 163.11512 * 7 5 4 10 10 H 1.48501 * 109.47061 * 59.99381 * 9 7 5 11 11 H 1.48500 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46792 * 299.99482 * 9 7 5 13 13 C 1.34773 * 120.00027 * 277.08473 * 4 3 2 14 14 O 1.21622 * 120.00400 * 182.71878 * 13 4 3 15 15 C 1.47430 * 119.99779 * 2.72689 * 13 4 3 16 16 C 1.36701 * 125.77030 * 184.74122 * 15 13 4 17 17 N 1.35090 * 106.77514 * 180.25789 * 16 15 13 18 18 C 1.40251 * 126.60789 * 180.02562 * 17 16 15 19 19 C 1.38830 * 120.05151 * 359.70115 * 18 17 16 20 20 C 1.38107 * 119.94535 * 179.76549 * 19 18 17 21 21 C 1.38391 * 120.05137 * 0.50819 * 20 19 18 22 22 Cl 1.73605 * 119.94516 * 179.76643 * 21 20 19 23 23 C 1.38388 * 120.10554 * 359.74304 * 21 20 19 24 24 C 1.38109 * 120.05376 * 0.02562 * 23 21 20 25 25 N 1.40214 * 106.78552 * 0.02562 * 17 16 15 26 26 N 1.28752 * 108.40159 * 359.97438 * 25 17 16 27 27 H 1.08997 * 109.47691 * 358.81518 * 3 2 1 28 28 H 1.09008 * 109.46950 * 238.81191 * 3 2 1 29 29 H 0.97000 * 119.99614 * 180.02562 * 8 7 5 30 30 H 1.07994 * 126.60932 * 0.24092 * 16 15 13 31 31 H 1.08001 * 120.02627 * 0.02562 * 19 18 17 32 32 H 1.08001 * 119.96932 * 180.22804 * 20 19 18 33 33 H 1.08000 * 119.97079 * 179.97438 * 23 21 20 34 34 H 1.07991 * 120.02635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0960 0.6666 -1.2102 5 6 3.4615 1.9857 -1.1658 6 1 4.0981 2.3959 -1.9360 7 6 3.0134 2.7966 -0.1298 8 7 1.9964 2.4156 0.6100 9 14 3.8568 4.4282 0.2111 10 1 3.7610 5.2955 -0.9905 11 1 3.1937 5.0979 1.3587 12 1 5.2859 4.1883 0.5357 13 6 3.1853 -0.0189 -2.3671 14 8 3.6368 0.5196 -3.3598 15 6 2.7353 -1.4214 -2.4295 16 6 2.8549 -2.2517 -3.5089 17 7 2.3158 -3.4374 -3.1504 18 6 2.2208 -4.5879 -3.9468 19 6 2.7050 -4.5748 -5.2478 20 6 2.6146 -5.7105 -6.0285 21 6 2.0325 -6.8577 -5.5183 22 17 1.9150 -8.2818 -6.5041 23 6 1.5445 -6.8715 -4.2234 24 6 1.6369 -5.7398 -3.4373 25 7 1.8696 -3.2962 -1.8287 26 7 2.1326 -2.0983 -1.4366 27 1 2.9718 -1.0266 0.0212 28 1 2.9710 0.5330 0.8792 29 1 1.6835 2.9817 1.3328 30 1 3.2952 -2.0069 -4.4641 31 1 3.1557 -3.6785 -5.6477 32 1 2.9945 -5.7018 -7.0395 33 1 1.0903 -7.7679 -3.8276 34 1 1.2562 -5.7512 -2.4267 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523669978.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:20 Heat of formation + Delta-G solvation = 123.801745 kcal Electronic energy + Delta-G solvation = -24367.014708 eV Core-core repulsion = 20521.888104 eV Total energy + Delta-G solvation = -3845.126604 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.51145 -40.67765 -40.14622 -37.64313 -37.58907 -36.15143 -35.57821 -33.75998 -32.63472 -31.83800 -30.70163 -29.17608 -27.17541 -25.38741 -24.93117 -23.35430 -22.56038 -21.26924 -19.79697 -19.64030 -18.24253 -18.01175 -17.44768 -17.11713 -16.80493 -16.47888 -16.24225 -15.82599 -15.34373 -15.22470 -14.89559 -14.81129 -14.64249 -14.61066 -13.80609 -13.61323 -13.40177 -13.35098 -13.24878 -13.09253 -12.84802 -12.68104 -12.46181 -12.34437 -12.11872 -11.95884 -11.88769 -11.73114 -11.13840 -10.76557 -10.53629 -10.29678 -9.96513 -9.51538 -8.41345 -6.01058 -0.76270 0.06676 0.54710 0.64456 0.83072 1.07007 1.50184 1.52606 1.61740 1.94479 2.25475 2.34767 2.41817 2.46505 2.83960 3.05030 3.17691 3.35002 3.62188 3.69431 3.77230 3.84518 3.95255 3.98078 4.25817 4.34811 4.45404 4.72178 4.79332 4.81080 4.90376 5.00859 5.16977 5.28382 5.45716 5.66054 5.96175 6.31400 6.78157 7.02197 7.08973 7.25627 7.80121 8.61346 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.032621 B = 0.002523 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.147939 B =11096.688055 C =11775.056737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.279 3.721 3 C 0.229 3.771 4 N -0.431 5.431 5 C -0.339 4.339 6 H 0.098 0.902 7 C 0.003 3.997 8 N -0.891 5.891 9 Si 0.999 3.001 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.257 1.257 13 C 0.520 3.480 14 O -0.602 6.602 15 C -0.090 4.090 16 C 0.097 3.903 17 N -0.306 5.306 18 C 0.117 3.883 19 C -0.107 4.107 20 C -0.080 4.080 21 C -0.037 4.037 22 Cl -0.055 7.055 23 C -0.085 4.085 24 C -0.101 4.101 25 N -0.079 5.079 26 N -0.221 5.221 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.278 0.722 30 H 0.239 0.761 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -19.851 -10.560 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.038 4.038 3 C 0.102 3.898 4 N -0.148 5.148 5 C -0.467 4.467 6 H 0.115 0.885 7 C -0.200 4.200 8 N -0.529 5.529 9 Si 0.822 3.178 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.182 1.182 13 C 0.309 3.691 14 O -0.487 6.487 15 C -0.228 4.228 16 C -0.056 4.056 17 N -0.085 5.085 18 C 0.026 3.974 19 C -0.128 4.128 20 C -0.099 4.099 21 C -0.065 4.065 22 Cl -0.026 7.026 23 C -0.104 4.104 24 C -0.121 4.121 25 N -0.057 5.057 26 N -0.094 5.094 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.255 0.745 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.183 0.817 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.025 -20.277 -9.717 22.576 hybrid contribution 0.730 1.351 -0.388 1.584 sum 2.754 -18.926 -10.105 21.631 Atomic orbital electron populations 1.80809 1.14666 1.14149 1.10199 1.29305 0.95418 0.88063 0.91026 1.19070 0.80810 0.98960 0.90914 1.43610 1.54180 1.10444 1.06570 1.19811 1.29828 0.84855 1.12159 0.88452 1.26157 0.95028 1.02954 0.95895 1.69958 1.22032 1.40418 1.20481 0.84892 0.78841 0.76429 0.77601 1.20174 1.20489 1.18162 1.16972 0.84572 0.84290 0.83313 1.90607 1.52302 1.70539 1.35243 1.21686 1.10590 0.97662 0.92903 1.23676 0.96631 0.83502 1.01812 1.47688 1.39574 1.09419 1.11861 1.18075 1.03776 0.84434 0.91104 1.21205 1.00188 1.01089 0.90340 1.21199 0.97548 0.89544 1.01608 1.21224 1.02352 0.89849 0.93052 1.98403 1.96732 1.37975 1.69457 1.21155 0.98660 0.98884 0.91710 1.20998 0.98775 0.90629 1.01690 1.81921 1.20780 1.12319 0.90664 1.74800 1.09818 0.99792 1.25032 0.86136 0.85694 0.91193 0.74512 0.81667 0.80954 0.81735 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -27.03 18.54 20.00 0.37 -26.66 16 2 C 0.28 13.70 12.03 89.44 1.08 14.77 16 3 C 0.23 10.19 4.75 84.57 0.40 10.59 16 4 N -0.43 -21.24 2.60 -649.13 -1.69 -22.93 16 5 C -0.34 -17.64 9.34 84.07 0.78 -16.86 16 6 H 0.10 5.24 7.36 -2.91 -0.02 5.22 16 7 C 0.00 0.12 4.97 84.94 0.42 0.55 16 8 N -0.89 -45.42 9.33 21.67 0.20 -45.21 16 9 Si 1.00 39.48 29.59 68.60 2.03 41.51 16 10 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 13 C 0.52 24.60 7.55 86.67 0.65 25.25 16 14 O -0.60 -30.78 16.52 -4.10 -0.07 -30.85 16 15 C -0.09 -3.53 6.59 40.81 0.27 -3.26 16 16 C 0.10 2.85 10.61 83.83 0.89 3.74 16 17 N -0.31 -8.41 3.82 -186.80 -0.71 -9.12 16 18 C 0.12 2.37 6.70 38.08 0.25 2.62 16 19 C -0.11 -1.50 9.47 22.38 0.21 -1.29 16 20 C -0.08 -0.88 9.82 22.28 0.22 -0.66 16 21 C -0.04 -0.46 6.32 22.34 0.14 -0.32 16 22 Cl -0.05 -0.64 28.95 -2.72 -0.08 -0.72 16 23 C -0.09 -1.12 9.82 22.27 0.22 -0.90 16 24 C -0.10 -1.79 9.67 22.38 0.22 -1.57 16 25 N -0.08 -2.68 13.12 37.02 0.49 -2.20 16 26 N -0.22 -8.62 7.78 -49.99 -0.39 -9.00 16 27 H 0.12 4.75 5.81 -2.39 -0.01 4.74 16 28 H 0.13 5.55 6.34 -2.38 -0.02 5.54 16 29 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.24 5.03 7.13 -2.91 -0.02 5.01 16 31 H 0.17 1.62 6.81 -2.91 -0.02 1.60 16 32 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.15 2.72 7.73 -2.91 -0.02 2.70 16 Total: -1.00 -68.97 324.79 7.10 -61.87 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.19 Total: 10.65 kcal Atomic # 6 Polarization: 26.90 SS G_CDS: 5.76 Total: 32.66 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -1.73 Total: -115.12 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.07 Total: -30.85 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -68.97 7.10 -61.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523669978.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.668 kcal (2) G-P(sol) polarization free energy of solvation -68.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds