Wall clock time and date at job start Tue Mar 31 2020 17:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00459 * 2 1 4 4 C 1.53002 * 109.47465 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47227 * 64.99915 * 4 3 2 6 6 C 1.36699 * 120.00096 * 272.62982 * 5 4 3 7 7 H 1.08003 * 119.99926 * 135.40801 * 6 5 4 8 8 C 1.39168 * 120.00052 * 315.41707 * 6 5 4 9 9 N 1.31286 * 119.99742 * 0.45155 * 8 6 5 10 10 Si 1.86800 * 120.00040 * 180.45533 * 8 6 5 11 11 H 1.48500 * 109.47149 * 90.00068 * 10 8 6 12 12 H 1.48504 * 109.46900 * 209.99638 * 10 8 6 13 13 H 1.48493 * 109.47121 * 329.99526 * 10 8 6 14 14 C 1.34778 * 120.00317 * 92.90543 * 5 4 3 15 15 O 1.21556 * 119.99689 * 354.01483 * 14 5 4 16 16 C 1.48165 * 120.00338 * 174.01358 * 14 5 4 17 17 N 1.33193 * 120.52214 * 356.11589 * 16 14 5 18 18 C 1.32276 * 120.64969 * 179.71481 * 17 16 14 19 19 S 1.76196 * 119.12049 * 180.28748 * 18 17 16 20 20 C 1.81003 * 100.00163 * 180.27649 * 19 18 17 21 21 N 1.32662 * 121.75569 * 0.57414 * 18 17 16 22 22 C 1.32115 * 121.00357 * 359.71037 * 21 18 17 23 23 C 1.38912 * 119.24034 * 0.02562 * 22 21 18 24 24 Cl 1.73600 * 120.80218 * 179.97438 * 23 22 21 25 25 H 1.08994 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47179 * 300.00656 * 1 2 3 27 27 H 1.09006 * 109.46822 * 59.99858 * 1 2 3 28 28 H 1.08999 * 109.47261 * 59.99774 * 3 2 1 29 29 H 1.09002 * 109.47050 * 299.99628 * 3 2 1 30 30 H 1.08999 * 109.46831 * 304.99959 * 4 3 2 31 31 H 1.09001 * 109.47067 * 185.00077 * 4 3 2 32 32 H 0.96997 * 119.99676 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46736 * 60.00049 * 20 19 18 34 34 H 1.08996 * 109.47200 * 179.97438 * 20 19 18 35 35 H 1.08994 * 109.47218 * 300.00199 * 20 19 18 36 36 H 1.07994 * 120.38145 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0450 -0.7972 -1.3536 7 1 3.6623 -1.2936 -2.2331 8 6 4.6086 -1.5436 -0.3230 9 7 5.0656 -0.9408 0.7500 10 14 4.7148 -3.4030 -0.4665 11 1 6.0012 -3.7774 -1.1069 12 1 4.6410 -4.0089 0.8873 13 1 3.5866 -3.9009 -1.2938 14 6 4.3177 1.3361 -2.3033 15 8 4.1582 2.5400 -2.2505 16 6 4.8882 0.7172 -3.5227 17 7 5.1392 -0.5902 -3.5636 18 6 5.6432 -1.1463 -4.6529 19 16 5.9524 -2.8809 -4.6655 20 6 6.6187 -3.0692 -6.3379 21 7 5.9273 -0.4319 -5.7340 22 6 5.7104 0.8709 -5.7652 23 6 5.1771 1.4970 -4.6457 24 17 4.8763 3.2067 -4.6420 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1764 0.0889 32 1 5.4580 -1.4610 1.4684 33 1 7.5156 -2.4586 -6.4425 34 1 6.8693 -4.1153 -6.5134 35 1 5.8730 -2.7469 -7.0645 36 1 5.9458 1.4428 -6.6505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575885781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:34 Heat of formation + Delta-G solvation = -3.383286 kcal Electronic energy + Delta-G solvation = -24603.109157 eV Core-core repulsion = 20855.618597 eV Total energy + Delta-G solvation = -3747.490560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51885 -38.46739 -36.90132 -36.12024 -34.79563 -33.41505 -31.63574 -31.29165 -29.30973 -28.78360 -25.88286 -25.34497 -24.35348 -24.07783 -22.02540 -19.78426 -18.46466 -17.63512 -16.71996 -15.99969 -15.74840 -15.50893 -15.20700 -14.93578 -14.64642 -14.36930 -14.22529 -14.05820 -13.51288 -13.48152 -13.08364 -12.91042 -12.52156 -11.92000 -11.83222 -11.61052 -11.21197 -11.15161 -11.02751 -10.92763 -10.85975 -10.66293 -10.38189 -10.32124 -10.22456 -10.02729 -9.28138 -9.20212 -9.00265 -8.91618 -8.23149 -7.54906 -7.43071 -6.30466 -3.96923 0.83910 1.23697 1.47172 2.33041 2.55792 3.22824 3.29846 3.34357 3.54011 4.05664 4.31192 4.39752 4.46215 4.57495 4.87693 5.10244 5.19885 5.23529 5.27037 5.36269 5.69310 5.75716 5.84564 5.96863 6.02553 6.09247 6.21228 6.32882 6.40687 6.70233 7.11112 7.30640 7.62998 7.79254 7.99096 8.18471 8.46631 9.07607 9.33925 9.78036 10.64057 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.006849 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.197219 B = 4087.025720 C = 6181.763344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.057 3.943 4 C 0.094 3.906 5 N -0.387 5.387 6 C -0.256 4.256 7 H 0.104 0.896 8 C 0.049 3.951 9 N -0.863 5.863 10 Si 0.917 3.083 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.483 3.517 15 O -0.584 6.584 16 C 0.184 3.816 17 N -0.416 5.416 18 C 0.276 3.724 19 S 0.005 5.995 20 C -0.147 4.147 21 N -0.527 5.527 22 C 0.157 3.843 23 C -0.126 4.126 24 Cl -0.020 7.020 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.139 0.861 31 H 0.073 0.927 32 H 0.272 0.728 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.712 -1.321 -8.388 8.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C -0.021 4.021 4 C -0.029 4.029 5 N -0.102 5.102 6 C -0.387 4.387 7 H 0.121 0.879 8 C -0.157 4.157 9 N -0.501 5.501 10 Si 0.743 3.257 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.188 1.188 14 C 0.272 3.728 15 O -0.470 6.470 16 C 0.033 3.967 17 N -0.134 5.134 18 C -0.100 4.100 19 S 0.238 5.762 20 C -0.317 4.317 21 N -0.247 5.247 22 C -0.012 4.012 23 C -0.162 4.162 24 Cl 0.009 6.991 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.156 0.844 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.610 -2.696 -7.297 7.803 hybrid contribution -0.108 1.380 -1.009 1.713 sum -0.718 -1.317 -8.306 8.440 Atomic orbital electron populations 1.22636 0.83542 1.01720 0.98717 1.88168 1.17213 1.27504 1.94994 1.22930 0.96174 0.84433 0.98570 1.22027 0.89731 0.99647 0.91481 1.43467 1.50384 1.06644 1.09701 1.19733 1.34387 0.79823 1.04783 0.87890 1.25469 0.94494 1.00697 0.95009 1.69459 1.37142 1.36556 1.06924 0.86032 0.79763 0.82284 0.77601 1.19298 1.21070 1.18844 1.17866 0.84733 0.85972 0.84205 1.90717 1.60886 1.13134 1.82258 1.21950 0.92820 0.88308 0.93653 1.69871 1.10732 1.10251 1.22591 1.25198 0.95203 1.01025 0.88534 1.86063 1.77421 0.95036 1.17632 1.23529 1.05218 1.05507 0.97418 1.68630 1.20771 1.07065 1.28217 1.22975 0.91842 0.90044 0.96303 1.22652 1.06982 0.89239 0.97356 1.98371 1.94032 1.08353 1.98373 0.90430 0.95204 0.95132 0.94109 0.94363 0.84393 0.90911 0.91733 0.89386 0.88047 0.89374 0.81044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.68 10.05 -35.23 -0.35 -8.04 16 3 C 0.06 1.16 6.28 37.16 0.23 1.40 16 4 C 0.09 2.20 5.47 -4.04 -0.02 2.17 16 5 N -0.39 -9.75 2.50 -115.79 -0.29 -10.04 16 6 C -0.26 -6.55 6.64 -15.04 -0.10 -6.65 16 7 H 0.10 2.70 6.44 -52.48 -0.34 2.36 16 8 C 0.05 1.24 5.37 -17.44 -0.09 1.15 16 9 N -0.86 -22.31 10.77 55.51 0.60 -21.71 16 10 Si 0.92 20.35 29.55 -169.99 -5.02 15.32 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 14 C 0.48 12.00 7.61 -12.18 -0.09 11.91 16 15 O -0.58 -14.75 13.74 5.32 0.07 -14.68 16 16 C 0.18 4.17 6.67 -82.64 -0.55 3.62 16 17 N -0.42 -9.34 6.73 -10.03 -0.07 -9.41 16 18 C 0.28 5.34 7.85 -90.99 -0.71 4.63 16 19 S 0.01 0.09 22.89 -107.50 -2.46 -2.37 16 20 C -0.15 -1.68 9.61 101.05 0.97 -0.71 16 21 N -0.53 -9.08 9.11 -13.44 -0.12 -9.20 16 22 C 0.16 2.55 11.13 -17.18 -0.19 2.36 16 23 C -0.13 -2.42 6.40 -38.77 -0.25 -2.67 16 24 Cl -0.02 -0.36 26.23 -51.86 -1.36 -1.72 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.14 3.46 5.16 -51.93 -0.27 3.19 16 31 H 0.07 1.68 7.42 -51.93 -0.39 1.30 16 32 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.09 1.00 8.11 -51.92 -0.42 0.58 16 34 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.09 0.98 8.11 -51.92 -0.42 0.56 16 36 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -29.21 337.38 -7.55 -36.76 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.93 Total: 1.18 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 0.30 Total: 18.83 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.12 Total: -50.35 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.28 Total: -22.72 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.46 Total: -2.37 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.36 Total: -1.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.21 -7.55 -36.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575885781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.373 kcal (2) G-P(sol) polarization free energy of solvation -29.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds