Wall clock time and date at job start Tue Mar 31 2020 17:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00459 * 2 1 4 4 C 1.53002 * 109.47465 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47227 * 64.99915 * 4 3 2 6 6 C 1.36699 * 120.00096 * 272.62982 * 5 4 3 7 7 H 1.08003 * 119.99926 * 135.40801 * 6 5 4 8 8 C 1.39168 * 120.00052 * 315.41707 * 6 5 4 9 9 N 1.31286 * 119.99742 * 0.45155 * 8 6 5 10 10 Si 1.86800 * 120.00040 * 180.45533 * 8 6 5 11 11 H 1.48500 * 109.47149 * 90.00068 * 10 8 6 12 12 H 1.48504 * 109.46900 * 209.99638 * 10 8 6 13 13 H 1.48493 * 109.47121 * 329.99526 * 10 8 6 14 14 C 1.34778 * 120.00317 * 92.90543 * 5 4 3 15 15 O 1.21556 * 119.99689 * 354.01483 * 14 5 4 16 16 C 1.48165 * 120.00338 * 174.01358 * 14 5 4 17 17 N 1.33193 * 120.52214 * 356.11589 * 16 14 5 18 18 C 1.32276 * 120.64969 * 179.71481 * 17 16 14 19 19 S 1.76196 * 119.12049 * 180.28748 * 18 17 16 20 20 C 1.81003 * 100.00163 * 180.27649 * 19 18 17 21 21 N 1.32662 * 121.75569 * 0.57414 * 18 17 16 22 22 C 1.32115 * 121.00357 * 359.71037 * 21 18 17 23 23 C 1.38912 * 119.24034 * 0.02562 * 22 21 18 24 24 Cl 1.73600 * 120.80218 * 179.97438 * 23 22 21 25 25 H 1.08994 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47179 * 300.00656 * 1 2 3 27 27 H 1.09006 * 109.46822 * 59.99858 * 1 2 3 28 28 H 1.08999 * 109.47261 * 59.99774 * 3 2 1 29 29 H 1.09002 * 109.47050 * 299.99628 * 3 2 1 30 30 H 1.08999 * 109.46831 * 304.99959 * 4 3 2 31 31 H 1.09001 * 109.47067 * 185.00077 * 4 3 2 32 32 H 0.96997 * 119.99676 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46736 * 60.00049 * 20 19 18 34 34 H 1.08996 * 109.47200 * 179.97438 * 20 19 18 35 35 H 1.08994 * 109.47218 * 300.00199 * 20 19 18 36 36 H 1.07994 * 120.38145 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0450 -0.7972 -1.3536 7 1 3.6623 -1.2936 -2.2331 8 6 4.6086 -1.5436 -0.3230 9 7 5.0656 -0.9408 0.7500 10 14 4.7148 -3.4030 -0.4665 11 1 6.0012 -3.7774 -1.1069 12 1 4.6410 -4.0089 0.8873 13 1 3.5866 -3.9009 -1.2938 14 6 4.3177 1.3361 -2.3033 15 8 4.1582 2.5400 -2.2505 16 6 4.8882 0.7172 -3.5227 17 7 5.1392 -0.5902 -3.5636 18 6 5.6432 -1.1463 -4.6529 19 16 5.9524 -2.8809 -4.6655 20 6 6.6187 -3.0692 -6.3379 21 7 5.9273 -0.4319 -5.7340 22 6 5.7104 0.8709 -5.7652 23 6 5.1771 1.4970 -4.6457 24 17 4.8763 3.2067 -4.6420 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1764 0.0889 32 1 5.4580 -1.4610 1.4684 33 1 7.5156 -2.4586 -6.4425 34 1 6.8693 -4.1153 -6.5134 35 1 5.8730 -2.7469 -7.0645 36 1 5.9458 1.4428 -6.6505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575885781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:33 Heat of formation + Delta-G solvation = -21.182867 kcal Electronic energy + Delta-G solvation = -24603.881005 eV Core-core repulsion = 20855.618597 eV Total energy + Delta-G solvation = -3748.262408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08441 -40.25232 -38.50501 -37.61417 -36.63721 -34.96921 -33.48387 -32.81014 -30.96421 -29.77872 -27.30951 -27.08711 -26.02473 -25.56952 -23.69456 -21.53961 -20.17367 -19.18114 -18.32032 -17.60947 -17.29302 -17.17064 -16.78062 -16.50953 -16.24114 -15.98767 -15.81061 -15.60618 -14.94007 -14.85840 -14.60711 -14.27438 -13.59700 -13.47806 -13.41523 -13.23129 -12.96178 -12.75474 -12.73174 -12.48391 -12.36381 -12.24854 -12.06211 -11.89844 -11.72592 -11.53815 -10.94202 -10.80265 -10.74575 -10.47134 -9.93710 -9.38310 -8.79044 -8.15351 -5.90818 -0.73052 -0.22676 0.13962 1.04724 1.24449 1.47356 1.49480 1.59488 1.86783 2.31394 2.58475 2.68798 3.03539 3.06592 3.24790 3.42860 3.69668 3.73439 4.28976 4.36975 4.39355 4.41509 4.53328 4.55942 4.63832 4.65085 4.79798 4.85183 4.92415 4.99342 5.44174 5.60778 5.72594 5.99278 6.45426 6.53222 6.68416 7.19725 7.47151 7.89882 8.79922 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.006849 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.197219 B = 4087.025720 C = 6181.763344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.068 3.932 4 C 0.092 3.908 5 N -0.402 5.402 6 C -0.264 4.264 7 H 0.091 0.909 8 C 0.014 3.986 9 N -0.894 5.894 10 Si 0.960 3.040 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.262 1.262 14 C 0.476 3.524 15 O -0.596 6.596 16 C 0.158 3.842 17 N -0.446 5.446 18 C 0.265 3.735 19 S -0.024 6.024 20 C -0.130 4.130 21 N -0.508 5.508 22 C 0.180 3.820 23 C -0.131 4.131 24 Cl -0.011 7.011 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.270 0.730 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 -1.883 -10.947 11.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.009 4.009 4 C -0.030 4.030 5 N -0.117 5.117 6 C -0.394 4.394 7 H 0.108 0.892 8 C -0.188 4.188 9 N -0.534 5.534 10 Si 0.785 3.215 11 H -0.190 1.190 12 H -0.208 1.208 13 H -0.187 1.187 14 C 0.265 3.735 15 O -0.483 6.483 16 C 0.007 3.993 17 N -0.165 5.165 18 C -0.109 4.109 19 S 0.209 5.791 20 C -0.299 4.299 21 N -0.226 5.226 22 C 0.009 3.991 23 C -0.167 4.167 24 Cl 0.018 6.982 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.152 0.848 35 H 0.114 0.886 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.347 -3.288 -9.845 10.386 hybrid contribution -0.159 1.626 -0.509 1.711 sum -0.506 -1.662 -10.354 10.499 Atomic orbital electron populations 1.22861 0.80920 1.03173 1.00100 1.88109 1.20163 1.27760 1.95256 1.22744 0.94287 0.84595 0.99320 1.21964 0.91838 0.98520 0.90717 1.43579 1.51274 1.06741 1.10132 1.19512 1.35378 0.80014 1.04511 0.89201 1.25998 0.94435 1.03515 0.94835 1.69560 1.38953 1.37318 1.07529 0.85388 0.79699 0.78937 0.77521 1.19022 1.20751 1.18655 1.18317 0.84120 0.86064 0.85008 1.90673 1.61090 1.13619 1.82881 1.21788 0.94123 0.89270 0.94090 1.69725 1.11870 1.10405 1.24508 1.25635 0.94814 1.02408 0.88079 1.86178 1.77395 0.93231 1.22256 1.23663 1.05079 1.07754 0.93422 1.68783 1.19695 1.07323 1.26827 1.23785 0.89011 0.89713 0.96545 1.22823 1.06956 0.89639 0.97322 1.98374 1.93983 1.07537 1.98338 0.89035 0.92920 0.94513 0.91339 0.95322 0.86071 0.91742 0.91941 0.88850 0.84752 0.88609 0.76001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.39 -16.95 10.05 -148.98 -1.50 -18.45 16 3 C 0.07 2.84 6.28 71.98 0.45 3.30 16 4 C 0.09 4.49 5.47 86.38 0.47 4.96 16 5 N -0.40 -20.95 2.50 -638.51 -1.60 -22.55 16 6 C -0.26 -13.93 6.64 84.16 0.56 -13.37 16 7 H 0.09 4.89 6.44 -2.91 -0.02 4.87 16 8 C 0.01 0.73 5.37 85.00 0.46 1.19 16 9 N -0.89 -48.01 10.77 21.70 0.23 -47.78 16 10 Si 0.96 42.47 29.55 68.60 2.03 44.50 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 14 C 0.48 24.22 7.61 86.88 0.66 24.88 16 15 O -0.60 -30.65 13.74 -3.89 -0.05 -30.70 16 16 C 0.16 7.17 6.67 41.94 0.28 7.45 16 17 N -0.45 -20.09 6.73 -185.63 -1.25 -21.34 16 18 C 0.27 9.91 7.85 180.48 1.42 11.32 16 19 S -0.02 -0.75 22.89 -56.49 -1.29 -2.04 16 20 C -0.13 -2.49 9.61 113.37 1.09 -1.40 16 21 N -0.51 -15.94 9.11 -196.44 -1.79 -17.73 16 22 C 0.18 5.23 11.13 84.81 0.94 6.17 16 23 C -0.13 -4.83 6.40 22.79 0.15 -4.68 16 24 Cl -0.01 -0.39 26.23 -2.72 -0.07 -0.46 16 25 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.12 6.37 5.16 -2.39 -0.01 6.36 16 31 H 0.06 3.13 7.42 -2.39 -0.02 3.11 16 32 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 33 H 0.09 1.75 8.11 -2.39 -0.02 1.73 16 34 H 0.13 1.74 8.14 -2.40 -0.02 1.72 16 35 H 0.09 1.74 8.11 -2.40 -0.02 1.72 16 36 H 0.22 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -65.77 337.38 3.56 -62.21 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.12 Total: 12.44 kcal Atomic # 6 Polarization: 34.16 SS G_CDS: 7.72 Total: 41.88 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -4.40 Total: -109.39 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.55 Total: -49.15 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -1.29 Total: -2.04 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.07 Total: -0.46 kcal Total: -65.77 3.56 -62.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575885781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.030 kcal (2) G-P(sol) polarization free energy of solvation -65.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds