Wall clock time and date at job start Tue Mar 31 2020 16:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48503 * 109.47273 * 274.96894 * 3 2 1 5 5 H 1.48506 * 109.46920 * 34.96642 * 3 2 1 6 6 H 1.48493 * 109.47069 * 154.96553 * 3 2 1 7 7 C 1.37878 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 185.85683 * 7 2 1 9 9 C 1.50699 * 120.00220 * 5.85430 * 7 2 1 10 10 O 1.42893 * 110.88499 * 295.08381 * 9 7 2 11 11 C 1.55156 * 111.00338 * 171.19715 * 9 7 2 12 12 C 1.54429 * 102.89510 * 206.40900 * 11 9 7 13 13 N 1.47017 * 107.27871 * 22.18904 * 12 11 9 14 14 C 1.34778 * 125.64743 * 181.02810 * 13 12 11 15 15 O 1.21591 * 120.00371 * 174.69291 * 14 13 12 16 16 C 1.47574 * 119.99852 * 354.68863 * 14 13 12 17 17 C 1.39739 * 120.13977 * 315.99103 * 16 14 13 18 18 C 1.37744 * 119.92852 * 179.71723 * 17 16 14 19 19 C 1.38736 * 120.19937 * 0.53571 * 18 17 16 20 20 F 1.35096 * 119.86392 * 179.73986 * 19 18 17 21 21 C 1.38583 * 120.27974 * 359.76269 * 19 18 17 22 22 Cl 1.73597 * 119.96917 * 179.97438 * 21 19 18 23 23 C 1.38300 * 120.06966 * 359.95927 * 21 19 18 24 24 F 1.35101 * 120.10233 * 180.02562 * 23 21 19 25 25 C 1.47424 * 108.70770 * 1.05873 * 13 12 11 26 26 H 0.96997 * 120.00077 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00615 * 59.30157 * 10 9 7 28 28 H 1.08999 * 110.72475 * 324.75453 * 11 9 7 29 29 H 1.09005 * 110.71585 * 88.02527 * 11 9 7 30 30 H 1.09005 * 109.87358 * 262.77062 * 12 11 9 31 31 H 1.08996 * 110.00784 * 141.68268 * 12 11 9 32 32 H 1.08004 * 120.03407 * 359.97438 * 17 16 14 33 33 H 1.07997 * 119.90260 * 180.25307 * 18 17 16 34 34 H 1.09000 * 110.37343 * 217.03104 * 25 13 12 35 35 H 1.09000 * 110.36253 * 94.70912 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3917 2.1071 -1.3948 5 1 1.5030 2.6201 0.8024 6 1 3.5952 1.4122 0.5924 7 6 2.0046 -1.1941 -0.0005 8 1 3.0804 -1.1965 0.0949 9 6 1.2570 -2.4957 -0.1342 10 8 0.4086 -2.7142 0.9946 11 6 2.2372 -3.6822 -0.3314 12 6 1.3814 -4.7119 -1.1009 13 7 0.2933 -3.9723 -1.7569 14 6 -0.6827 -4.5156 -2.5110 15 8 -1.5887 -3.8194 -2.9268 16 6 -0.6518 -5.9557 -2.8322 17 6 0.5445 -6.5612 -3.2258 18 6 0.5696 -7.9069 -3.5189 19 6 -0.5918 -8.6612 -3.4353 20 9 -0.5605 -9.9793 -3.7294 21 6 -1.7841 -8.0680 -3.0518 22 17 -3.2327 -9.0193 -2.9504 23 6 -1.8211 -6.7190 -2.7493 24 9 -2.9830 -6.1402 -2.3749 25 6 0.4470 -2.5377 -1.4540 26 1 -0.4850 0.8400 0.0004 27 1 -0.2534 -2.0223 1.1289 28 1 3.0987 -3.3763 -0.9248 29 1 2.5537 -4.0849 0.6309 30 1 0.9668 -5.4424 -0.4061 31 1 1.9905 -5.2174 -1.8503 32 1 1.4492 -5.9756 -3.2961 33 1 1.4952 -8.3753 -3.8192 34 1 -0.5290 -2.0725 -1.3151 35 1 0.9960 -2.0382 -2.2522 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:25 Heat of formation + Delta-G solvation = -142.669952 kcal Electronic energy + Delta-G solvation = -26134.333974 eV Core-core repulsion = 21794.670353 eV Total energy + Delta-G solvation = -4339.663621 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.45424 -49.17438 -40.12361 -38.58414 -37.26146 -36.84736 -34.39850 -32.29810 -31.46200 -31.00171 -30.01972 -27.90396 -25.56216 -24.16568 -23.42069 -22.46572 -19.89252 -19.61987 -18.49470 -17.85183 -17.39388 -17.10747 -16.51410 -16.15524 -15.76462 -15.51052 -15.32539 -15.09873 -14.89696 -14.63826 -14.40114 -13.64275 -13.35061 -13.14212 -12.97561 -12.93339 -12.89072 -12.22232 -12.05794 -11.83557 -11.66410 -11.54196 -11.40406 -11.11773 -10.87356 -10.70782 -10.54432 -10.26904 -9.73044 -9.45065 -9.23941 -9.13917 -8.76632 -8.44891 -7.95215 -6.34777 -4.44546 0.22668 0.46163 1.50849 2.54100 3.08902 3.16891 3.25300 3.27272 3.28656 3.43460 3.89302 4.19041 4.21037 4.27828 4.54947 4.92045 5.01402 5.13168 5.24883 5.34624 5.41441 5.56801 5.61279 5.68363 5.92597 6.01962 6.13417 6.39087 6.61032 6.72634 6.80692 7.15005 7.27000 7.67384 7.92686 7.98108 8.43786 8.59949 9.22945 9.33976 10.72389 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.026089 B = 0.003153 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.994885 B = 8879.240532 C = 9392.297492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.098 3.902 13 N -0.598 5.598 14 C 0.564 3.436 15 O -0.527 6.527 16 C -0.149 4.149 17 C -0.029 4.029 18 C -0.156 4.156 19 C 0.153 3.847 20 F -0.116 7.116 21 C -0.126 4.126 22 Cl -0.026 7.026 23 C 0.188 3.812 24 F -0.099 7.099 25 C 0.094 3.906 26 H 0.271 0.729 27 H 0.383 0.617 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 -16.302 -6.508 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.155 4.155 12 C -0.025 4.025 13 N -0.330 5.330 14 C 0.351 3.649 15 O -0.405 6.405 16 C -0.154 4.154 17 C -0.047 4.047 18 C -0.175 4.175 19 C 0.133 3.867 20 F -0.095 7.095 21 C -0.155 4.155 22 Cl 0.003 6.997 23 C 0.167 3.833 24 F -0.077 7.077 25 C -0.027 4.027 26 H 0.081 0.919 27 H 0.234 0.766 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.108 0.892 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.278 -16.470 -6.689 17.822 hybrid contribution -0.323 1.106 -0.105 1.157 sum 0.955 -15.364 -6.794 16.826 Atomic orbital electron populations 1.69704 1.06033 1.28076 1.49035 1.25091 0.95008 0.99818 0.93278 0.86396 0.79878 0.82496 0.78201 1.20413 1.20984 1.19637 1.21451 0.94158 0.90049 1.52291 0.91385 1.19631 0.86104 0.91527 0.81962 1.86096 1.50972 1.52573 1.49607 1.22652 0.97712 0.95578 0.99567 1.22247 0.88788 0.95788 0.95691 1.48652 1.25808 1.11044 1.47537 1.17339 0.82214 0.85485 0.79907 1.90841 1.34127 1.62010 1.53535 1.20269 0.92788 0.95881 1.06467 1.21333 0.97129 0.93659 0.92609 1.21118 0.97625 0.94108 1.04686 1.17222 0.92296 0.78730 0.98491 1.91578 1.96949 1.30769 1.90160 1.20820 0.90278 0.91994 1.12410 1.98408 1.33963 1.70476 1.96822 1.16989 0.82292 0.88101 0.95951 1.91651 1.44734 1.83903 1.87391 1.23359 1.03205 0.76704 0.99398 0.91874 0.76625 0.90135 0.90497 0.91881 0.92320 0.82271 0.82375 0.89246 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.06 10.71 55.43 0.59 -22.46 16 2 C 0.07 1.80 5.24 -17.82 -0.09 1.71 16 3 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.54 -13.39 8.28 -34.44 -0.29 -13.68 16 8 H 0.07 1.65 7.80 -52.48 -0.41 1.24 16 9 C 0.25 5.66 0.88 -89.62 -0.08 5.59 16 10 O -0.58 -14.32 13.17 -35.23 -0.46 -14.79 16 11 C -0.12 -2.11 6.14 -24.84 -0.15 -2.26 16 12 C 0.10 1.52 5.90 -3.01 -0.02 1.50 16 13 N -0.60 -11.45 3.33 -171.67 -0.57 -12.02 16 14 C 0.56 10.84 7.23 -12.45 -0.09 10.75 16 15 O -0.53 -12.24 16.65 5.29 0.09 -12.15 16 16 C -0.15 -2.20 5.40 -104.91 -0.57 -2.77 16 17 C -0.03 -0.30 8.42 -39.20 -0.33 -0.63 16 18 C -0.16 -1.34 10.00 -39.58 -0.40 -1.73 16 19 C 0.15 1.60 7.28 -39.27 -0.29 1.31 16 20 F -0.12 -1.19 16.82 2.25 0.04 -1.15 16 21 C -0.13 -1.57 6.32 -39.43 -0.25 -1.82 16 22 Cl -0.03 -0.31 28.26 -51.86 -1.47 -1.77 16 23 C 0.19 2.78 7.22 -38.94 -0.28 2.50 16 24 F -0.10 -1.70 15.92 2.25 0.04 -1.66 16 25 C 0.09 2.13 5.40 -2.53 -0.01 2.12 16 26 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.38 9.77 7.50 45.56 0.34 10.12 16 28 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.68 5.67 -51.93 -0.29 0.38 16 32 H 0.16 1.37 6.07 -52.48 -0.32 1.05 16 33 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.09 2.33 7.31 -51.93 -0.38 1.95 16 35 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -28.78 322.52 -7.04 -35.83 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -2.30 Total: 8.09 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.84 Total: 2.60 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.02 Total: -34.48 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.38 Total: -26.94 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.07 Total: -2.81 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.47 Total: -1.77 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.78 -7.04 -35.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.841 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds