Wall clock time and date at job start Tue Mar 31 2020 16:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48503 * 109.47273 * 274.96894 * 3 2 1 5 5 H 1.48506 * 109.46920 * 34.96642 * 3 2 1 6 6 H 1.48493 * 109.47069 * 154.96553 * 3 2 1 7 7 C 1.37878 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 185.85683 * 7 2 1 9 9 C 1.50699 * 120.00220 * 5.85430 * 7 2 1 10 10 O 1.42893 * 110.88499 * 295.08381 * 9 7 2 11 11 C 1.55156 * 111.00338 * 171.19715 * 9 7 2 12 12 C 1.54429 * 102.89510 * 206.40900 * 11 9 7 13 13 N 1.47017 * 107.27871 * 22.18904 * 12 11 9 14 14 C 1.34778 * 125.64743 * 181.02810 * 13 12 11 15 15 O 1.21591 * 120.00371 * 174.69291 * 14 13 12 16 16 C 1.47574 * 119.99852 * 354.68863 * 14 13 12 17 17 C 1.39739 * 120.13977 * 315.99103 * 16 14 13 18 18 C 1.37744 * 119.92852 * 179.71723 * 17 16 14 19 19 C 1.38736 * 120.19937 * 0.53571 * 18 17 16 20 20 F 1.35096 * 119.86392 * 179.73986 * 19 18 17 21 21 C 1.38583 * 120.27974 * 359.76269 * 19 18 17 22 22 Cl 1.73597 * 119.96917 * 179.97438 * 21 19 18 23 23 C 1.38300 * 120.06966 * 359.95927 * 21 19 18 24 24 F 1.35101 * 120.10233 * 180.02562 * 23 21 19 25 25 C 1.47424 * 108.70770 * 1.05873 * 13 12 11 26 26 H 0.96997 * 120.00077 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00615 * 59.30157 * 10 9 7 28 28 H 1.08999 * 110.72475 * 324.75453 * 11 9 7 29 29 H 1.09005 * 110.71585 * 88.02527 * 11 9 7 30 30 H 1.09005 * 109.87358 * 262.77062 * 12 11 9 31 31 H 1.08996 * 110.00784 * 141.68268 * 12 11 9 32 32 H 1.08004 * 120.03407 * 359.97438 * 17 16 14 33 33 H 1.07997 * 119.90260 * 180.25307 * 18 17 16 34 34 H 1.09000 * 110.37343 * 217.03104 * 25 13 12 35 35 H 1.09000 * 110.36253 * 94.70912 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3917 2.1071 -1.3948 5 1 1.5030 2.6201 0.8024 6 1 3.5952 1.4122 0.5924 7 6 2.0046 -1.1941 -0.0005 8 1 3.0804 -1.1965 0.0949 9 6 1.2570 -2.4957 -0.1342 10 8 0.4086 -2.7142 0.9946 11 6 2.2372 -3.6822 -0.3314 12 6 1.3814 -4.7119 -1.1009 13 7 0.2933 -3.9723 -1.7569 14 6 -0.6827 -4.5156 -2.5110 15 8 -1.5887 -3.8194 -2.9268 16 6 -0.6518 -5.9557 -2.8322 17 6 0.5445 -6.5612 -3.2258 18 6 0.5696 -7.9069 -3.5189 19 6 -0.5918 -8.6612 -3.4353 20 9 -0.5605 -9.9793 -3.7294 21 6 -1.7841 -8.0680 -3.0518 22 17 -3.2327 -9.0193 -2.9504 23 6 -1.8211 -6.7190 -2.7493 24 9 -2.9830 -6.1402 -2.3749 25 6 0.4470 -2.5377 -1.4540 26 1 -0.4850 0.8400 0.0004 27 1 -0.2534 -2.0223 1.1289 28 1 3.0987 -3.3763 -0.9248 29 1 2.5537 -4.0849 0.6309 30 1 0.9668 -5.4424 -0.4061 31 1 1.9905 -5.2174 -1.8503 32 1 1.4492 -5.9756 -3.2961 33 1 1.4952 -8.3753 -3.8192 34 1 -0.5290 -2.0725 -1.3151 35 1 0.9960 -2.0382 -2.2522 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:24 Heat of formation + Delta-G solvation = -162.006084 kcal Electronic energy + Delta-G solvation = -26135.172452 eV Core-core repulsion = 21794.670353 eV Total energy + Delta-G solvation = -4340.502099 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.35471 -50.26277 -41.45748 -39.77346 -38.81417 -37.83239 -36.11526 -34.23234 -32.65963 -31.94512 -31.41443 -29.53415 -27.25445 -25.43064 -24.38704 -23.78464 -21.51175 -21.00115 -19.47089 -19.17081 -18.76582 -18.59005 -17.54290 -17.22524 -17.13132 -16.88368 -16.60329 -16.48114 -16.31941 -15.96415 -15.63318 -15.02361 -14.74238 -14.67635 -14.46233 -14.00837 -13.89588 -13.61135 -13.51859 -13.28467 -13.02862 -12.85457 -12.76770 -12.47434 -12.33944 -12.33020 -12.21507 -12.02007 -11.26231 -11.16145 -10.65411 -10.33295 -10.15301 -10.10433 -9.53657 -8.24941 -6.41581 -0.72959 -0.44612 0.57612 1.37771 1.42841 1.46047 1.55344 1.82591 2.14327 2.36216 2.39707 2.95736 3.02184 3.15031 3.37205 3.60081 3.78422 3.99450 4.11834 4.24829 4.30957 4.33225 4.50112 4.55238 4.73376 4.75838 4.80121 5.04746 5.10957 5.24701 5.29925 5.41691 5.49416 5.76483 6.07096 6.49431 6.68192 6.95488 7.27375 7.36852 8.80273 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.026089 B = 0.003153 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.994885 B = 8879.240532 C = 9392.297492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.228 3.772 10 O -0.591 6.591 11 C -0.111 4.111 12 C 0.098 3.902 13 N -0.601 5.601 14 C 0.560 3.440 15 O -0.584 6.584 16 C -0.167 4.167 17 C -0.014 4.014 18 C -0.122 4.122 19 C 0.163 3.837 20 F -0.110 7.110 21 C -0.131 4.131 22 Cl -0.028 7.028 23 C 0.161 3.839 24 F -0.126 7.126 25 C 0.107 3.893 26 H 0.268 0.732 27 H 0.373 0.627 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.188 0.812 33 H 0.209 0.791 34 H 0.042 0.958 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -18.814 -7.429 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.592 4.592 8 H 0.091 0.909 9 C 0.188 3.812 10 O -0.399 6.399 11 C -0.149 4.149 12 C -0.023 4.023 13 N -0.332 5.332 14 C 0.349 3.651 15 O -0.465 6.465 16 C -0.171 4.171 17 C -0.032 4.032 18 C -0.141 4.141 19 C 0.142 3.858 20 F -0.088 7.088 21 C -0.160 4.160 22 Cl 0.001 6.999 23 C 0.140 3.860 24 F -0.104 7.104 25 C -0.015 4.015 26 H 0.077 0.923 27 H 0.222 0.778 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.205 0.795 33 H 0.226 0.774 34 H 0.060 0.940 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.604 -19.030 -7.599 21.002 hybrid contribution -1.331 1.805 0.168 2.249 sum 3.273 -17.226 -7.431 19.043 Atomic orbital electron populations 1.69840 1.07326 1.28374 1.50020 1.25836 0.95608 1.02885 0.93155 0.85475 0.78942 0.78828 0.77994 1.20261 1.21446 1.18645 1.21816 0.94544 0.91125 1.51744 0.90880 1.19952 0.86740 0.93409 0.81136 1.86091 1.50986 1.52170 1.50641 1.22680 0.97386 0.93956 1.00865 1.22506 0.87894 0.94934 0.97015 1.48671 1.26979 1.09874 1.47635 1.18028 0.81016 0.87284 0.78772 1.90800 1.36185 1.63940 1.55610 1.19961 0.94736 0.93050 1.09348 1.21614 0.96070 0.94553 0.90934 1.21570 0.98406 0.92725 1.01370 1.17392 0.92068 0.78994 0.97352 1.91607 1.96875 1.30444 1.89902 1.20877 0.91187 0.91171 1.12757 1.98406 1.34464 1.70152 1.96861 1.17244 0.81686 0.89189 0.97868 1.91577 1.46212 1.84514 1.88066 1.22881 1.00397 0.78922 0.99324 0.92262 0.77828 0.88200 0.89632 0.91046 0.86822 0.79529 0.77417 0.93950 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.45 10.71 21.45 0.23 -49.22 16 2 C 0.03 1.33 5.24 84.65 0.44 1.77 16 3 Si 0.96 40.60 29.54 68.60 2.03 42.62 16 4 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.55 -27.45 8.28 25.60 0.21 -27.24 16 8 H 0.07 3.46 7.80 -2.91 -0.02 3.44 16 9 C 0.23 10.44 0.88 -10.15 -0.01 10.43 16 10 O -0.59 -29.77 13.17 -148.98 -1.96 -31.73 16 11 C -0.11 -3.71 6.14 31.82 0.20 -3.52 16 12 C 0.10 2.72 5.90 86.77 0.51 3.24 16 13 N -0.60 -22.76 3.33 -815.29 -2.71 -25.47 16 14 C 0.56 21.82 7.23 86.71 0.63 22.44 16 15 O -0.58 -28.71 16.65 -4.00 -0.07 -28.78 16 16 C -0.17 -4.67 5.40 -20.05 -0.11 -4.78 16 17 C -0.01 -0.22 8.42 22.52 0.19 -0.03 16 18 C -0.12 -1.36 10.00 22.27 0.22 -1.14 16 19 C 0.16 2.75 7.28 22.47 0.16 2.91 16 20 F -0.11 -1.79 16.82 44.97 0.76 -1.03 16 21 C -0.13 -3.05 6.32 22.37 0.14 -2.91 16 22 Cl -0.03 -0.64 28.26 -2.72 -0.08 -0.72 16 23 C 0.16 4.74 7.22 22.68 0.16 4.90 16 24 F -0.13 -4.55 15.92 44.97 0.72 -3.83 16 25 C 0.11 5.01 5.40 86.86 0.47 5.48 16 26 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.37 20.06 7.50 -74.06 -0.56 19.51 16 28 H 0.10 2.93 8.03 -2.39 -0.02 2.91 16 29 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.11 1.95 5.67 -2.39 -0.01 1.93 16 32 H 0.19 1.99 6.07 -2.91 -0.02 1.98 16 33 H 0.21 0.41 8.06 -2.91 -0.02 0.39 16 34 H 0.04 2.35 7.31 -2.39 -0.02 2.34 16 35 H 0.05 2.61 8.03 -2.39 -0.02 2.59 16 Total: -1.00 -68.73 322.52 2.76 -65.97 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.62 Total: 20.62 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 3.22 Total: 11.57 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -2.48 Total: -74.70 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: -2.03 Total: -60.51 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 1.47 Total: -4.86 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -68.73 2.76 -65.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.033 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds