Wall clock time and date at job start Tue Mar 31 2020 15:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35928 * 116.99706 * 2 1 4 4 C 1.38739 * 120.04480 * 359.73115 * 3 2 1 5 5 C 1.38123 * 119.95970 * 180.27553 * 4 3 2 6 6 C 1.38392 * 120.04005 * 359.97438 * 5 4 3 7 7 Cl 1.73591 * 119.95592 * 180.02562 * 6 5 4 8 8 C 1.38346 * 120.08253 * 0.02562 * 6 5 4 9 9 C 1.38157 * 120.04707 * 0.02562 * 8 6 5 10 10 S 1.76202 * 120.02457 * 179.97438 * 9 8 6 11 11 O 1.42095 * 106.40284 * 228.55832 * 10 9 8 12 12 O 1.42106 * 106.39975 * 1.48098 * 10 9 8 13 13 N 1.65603 * 107.21541 * 115.01847 * 10 9 8 14 14 C 1.47064 * 136.05698 * 269.62680 * 13 10 9 15 15 C 1.53761 * 87.88596 * 152.96967 * 14 13 10 16 16 C 1.50702 * 114.26761 * 139.79135 * 15 14 13 17 17 H 1.07998 * 120.00157 * 266.47914 * 16 15 14 18 18 C 1.37879 * 120.00037 * 86.47618 * 16 15 14 19 19 N 1.31515 * 119.99603 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00259 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47028 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47284 * 119.99858 * 20 18 16 23 23 H 1.48502 * 109.46808 * 240.00240 * 20 18 16 24 24 C 1.47069 * 136.05339 * 90.01070 * 13 10 9 25 25 H 1.09002 * 109.47177 * 59.99565 * 1 2 3 26 26 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47154 * 299.99718 * 1 2 3 28 28 H 1.07999 * 120.02340 * 0.24230 * 4 3 2 29 29 H 1.07991 * 119.98101 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.97267 * 179.97438 * 8 6 5 31 31 H 1.08999 * 113.47143 * 267.69749 * 14 13 10 32 32 H 1.08996 * 113.47040 * 38.14226 * 14 13 10 33 33 H 1.08995 * 114.39166 * 272.67824 * 15 14 13 34 34 H 0.97004 * 119.99992 * 179.97438 * 19 18 16 35 35 H 1.09001 * 113.46740 * 321.85275 * 24 13 10 36 36 H 1.09000 * 113.47268 * 92.24317 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2913 2.3753 -0.0056 5 6 1.9202 3.6050 -0.0114 6 6 3.3022 3.6764 -0.0110 7 17 4.0903 5.2231 -0.0175 8 6 4.0565 2.5167 -0.0054 9 6 3.4312 1.2848 -0.0007 10 16 4.3924 -0.1919 0.0058 11 8 3.8558 -1.0245 -1.0129 12 8 5.7534 0.2154 0.0400 13 7 4.0985 -0.9618 1.4422 14 6 4.6895 -0.9527 2.7888 15 6 3.3120 -1.3645 3.3342 16 6 3.3640 -2.3888 4.4384 17 1 3.2794 -3.4397 4.2045 18 6 3.5196 -1.9842 5.7472 19 7 3.6233 -0.7044 6.0319 20 14 3.5848 -3.2538 7.1159 21 1 3.4471 -4.6141 6.5362 22 1 4.8835 -3.1478 7.8280 23 1 2.4747 -3.0088 8.0715 24 6 3.1357 -1.9606 1.9306 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2127 2.3200 -0.0061 29 1 1.3330 4.5114 -0.0162 30 1 5.1350 2.5745 -0.0055 31 1 5.4575 -1.7130 2.9310 32 1 5.0094 0.0366 3.1158 33 1 2.6462 -0.5295 3.5520 34 1 3.7324 -0.4197 6.9528 35 1 2.1319 -1.8297 1.5265 36 1 3.4938 -2.9866 1.8457 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594825934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:46 Heat of formation + Delta-G solvation = -49.601098 kcal Electronic energy + Delta-G solvation = -24447.372297 eV Core-core repulsion = 20665.584831 eV Total energy + Delta-G solvation = -3781.787466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43012 -38.19743 -37.94434 -36.70260 -36.32087 -35.42346 -32.60574 -31.72820 -30.19800 -28.27903 -27.49420 -24.89008 -24.52043 -23.60222 -22.48616 -19.91270 -19.03219 -18.09111 -17.36440 -16.87897 -16.69348 -16.37900 -15.86231 -15.41789 -15.18003 -14.70008 -14.57431 -14.21175 -13.93259 -13.61075 -13.00156 -12.88762 -12.76927 -12.28723 -12.13812 -11.86787 -11.71512 -11.67193 -11.60971 -11.43712 -11.34823 -11.30352 -10.99137 -10.92500 -10.61814 -10.50855 -10.25464 -9.67194 -9.18147 -9.04548 -8.57445 -8.46038 -8.16388 -6.14496 -4.18933 0.52189 0.85444 0.98564 1.96964 2.94387 3.09317 3.24751 3.33956 3.37125 3.52028 4.10431 4.35675 4.37719 4.48478 4.67767 4.90497 5.00564 5.03308 5.17652 5.18994 5.36540 5.38399 5.52448 5.76049 5.84208 5.90906 6.20965 6.23367 6.35707 6.47138 6.56745 6.78522 6.88733 6.94276 7.54377 7.66982 7.83937 8.25103 8.85132 9.47027 10.95175 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.004125 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.708530 B = 6785.945168 C = 7128.416375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.298 6.298 3 C 0.236 3.764 4 C -0.217 4.217 5 C -0.020 4.020 6 C -0.096 4.096 7 Cl -0.066 7.066 8 C 0.025 3.975 9 C -0.694 4.694 10 S 2.719 3.281 11 O -0.955 6.955 12 O -0.966 6.966 13 N -1.042 6.042 14 C 0.131 3.869 15 C 0.035 3.965 16 C -0.514 4.514 17 H 0.064 0.936 18 C 0.068 3.932 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.131 3.869 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 7.931 -11.408 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.187 3.813 4 C -0.237 4.237 5 C -0.039 4.039 6 C -0.124 4.124 7 Cl -0.038 7.038 8 C 0.006 3.994 9 C -0.778 4.778 10 S 2.809 3.191 11 O -0.945 6.945 12 O -0.957 6.957 13 N -0.884 5.884 14 C 0.006 3.994 15 C 0.014 3.986 16 C -0.553 4.553 17 H 0.082 0.918 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.210 1.210 24 C 0.006 3.994 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.083 0.917 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.175 0.825 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.644 7.862 -12.177 15.555 hybrid contribution -0.574 0.445 1.041 1.269 sum -6.217 8.307 -11.136 15.221 Atomic orbital electron populations 1.23252 0.76864 1.05236 1.01675 1.86225 1.22832 1.25523 1.86329 1.18385 0.90470 0.85220 0.87204 1.21270 1.00736 0.91437 1.10235 1.21054 0.92419 0.98230 0.92228 1.20767 0.93016 0.87002 1.11580 1.98363 1.80590 1.27521 1.97296 1.20696 1.00991 0.88631 0.89130 1.30562 1.04651 1.20061 1.22552 1.01009 0.72957 0.72956 0.72151 1.93544 1.80548 1.65193 1.55251 1.93531 1.31814 1.83671 1.86676 1.59768 1.48015 1.54099 1.26517 1.23123 1.00498 1.00331 0.75460 1.20513 0.92072 0.96480 0.89575 1.21033 1.50706 0.92917 0.90686 0.91768 1.25031 0.94471 0.95228 0.98845 1.69965 1.48766 1.14211 1.19418 0.86518 0.77662 0.81783 0.81926 1.19560 1.20943 1.21028 1.22812 0.90322 0.90899 0.95381 0.92205 0.87118 0.91699 0.83673 0.84047 0.82484 0.90808 0.92463 0.91628 0.92776 0.92242 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.38 8.30 -29.34 -0.24 -4.62 16 3 C 0.24 3.53 6.64 -39.22 -0.26 3.27 16 4 C -0.22 -2.56 9.04 -39.44 -0.36 -2.91 16 5 C -0.02 -0.23 9.82 -39.57 -0.39 -0.62 16 6 C -0.10 -1.27 6.32 -39.48 -0.25 -1.52 16 7 Cl -0.07 -0.78 28.95 -51.86 -1.50 -2.28 16 8 C 0.03 0.38 9.33 -39.57 -0.37 0.01 16 9 C -0.69 -11.51 5.92 -39.44 -0.23 -11.74 16 10 S 2.72 51.68 5.86 -107.50 -0.63 51.05 16 11 O -0.95 -19.58 17.29 -62.52 -1.08 -20.66 16 12 O -0.97 -19.80 16.97 -57.17 -0.97 -20.77 16 13 N -1.04 -20.78 4.23 -125.00 -0.53 -21.30 16 14 C 0.13 2.84 8.31 -8.36 -0.07 2.77 16 15 C 0.03 0.80 3.79 -91.12 -0.35 0.45 16 16 C -0.51 -12.89 8.83 -34.44 -0.30 -13.19 16 17 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -24.05 13.26 55.43 0.74 -23.31 16 20 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.13 2.58 8.29 -8.49 -0.07 2.51 16 25 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 26 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 28 H 0.15 1.21 6.30 -52.49 -0.33 0.88 16 29 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.16 2.27 7.33 -52.49 -0.38 1.89 16 31 H 0.07 1.59 8.10 -51.93 -0.42 1.17 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.61 8.11 -51.93 -0.42 1.19 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.06 1.07 7.14 -51.93 -0.37 0.70 16 36 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -30.97 338.15 -9.85 -40.82 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.96 Total: -0.84 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.75 Total: -18.09 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.21 Total: -44.62 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -2.30 Total: -46.05 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 51.68 SS G_CDS: -0.63 Total: 51.05 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.97 -9.85 -40.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.777 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds