Wall clock time and date at job start Tue Mar 31 2020 15:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35928 * 116.99706 * 2 1 4 4 C 1.38739 * 120.04480 * 359.73115 * 3 2 1 5 5 C 1.38123 * 119.95970 * 180.27553 * 4 3 2 6 6 C 1.38392 * 120.04005 * 359.97438 * 5 4 3 7 7 Cl 1.73591 * 119.95592 * 180.02562 * 6 5 4 8 8 C 1.38346 * 120.08253 * 0.02562 * 6 5 4 9 9 C 1.38157 * 120.04707 * 0.02562 * 8 6 5 10 10 S 1.76202 * 120.02457 * 179.97438 * 9 8 6 11 11 O 1.42095 * 106.40284 * 228.55832 * 10 9 8 12 12 O 1.42106 * 106.39975 * 1.48098 * 10 9 8 13 13 N 1.65603 * 107.21541 * 115.01847 * 10 9 8 14 14 C 1.47064 * 136.05698 * 269.62680 * 13 10 9 15 15 C 1.53761 * 87.88596 * 152.96967 * 14 13 10 16 16 C 1.50702 * 114.26761 * 139.79135 * 15 14 13 17 17 H 1.07998 * 120.00157 * 266.47914 * 16 15 14 18 18 C 1.37879 * 120.00037 * 86.47618 * 16 15 14 19 19 N 1.31515 * 119.99603 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00259 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47028 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47284 * 119.99858 * 20 18 16 23 23 H 1.48502 * 109.46808 * 240.00240 * 20 18 16 24 24 C 1.47069 * 136.05339 * 90.01070 * 13 10 9 25 25 H 1.09002 * 109.47177 * 59.99565 * 1 2 3 26 26 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47154 * 299.99718 * 1 2 3 28 28 H 1.07999 * 120.02340 * 0.24230 * 4 3 2 29 29 H 1.07991 * 119.98101 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.97267 * 179.97438 * 8 6 5 31 31 H 1.08999 * 113.47143 * 267.69749 * 14 13 10 32 32 H 1.08996 * 113.47040 * 38.14226 * 14 13 10 33 33 H 1.08995 * 114.39166 * 272.67824 * 15 14 13 34 34 H 0.97004 * 119.99992 * 179.97438 * 19 18 16 35 35 H 1.09001 * 113.46740 * 321.85275 * 24 13 10 36 36 H 1.09000 * 113.47268 * 92.24317 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2913 2.3753 -0.0056 5 6 1.9202 3.6050 -0.0114 6 6 3.3022 3.6764 -0.0110 7 17 4.0903 5.2231 -0.0175 8 6 4.0565 2.5167 -0.0054 9 6 3.4312 1.2848 -0.0007 10 16 4.3924 -0.1919 0.0058 11 8 3.8558 -1.0245 -1.0129 12 8 5.7534 0.2154 0.0400 13 7 4.0985 -0.9618 1.4422 14 6 4.6895 -0.9527 2.7888 15 6 3.3120 -1.3645 3.3342 16 6 3.3640 -2.3888 4.4384 17 1 3.2794 -3.4397 4.2045 18 6 3.5196 -1.9842 5.7472 19 7 3.6233 -0.7044 6.0319 20 14 3.5848 -3.2538 7.1159 21 1 3.4471 -4.6141 6.5362 22 1 4.8835 -3.1478 7.8280 23 1 2.4747 -3.0088 8.0715 24 6 3.1357 -1.9606 1.9306 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2127 2.3200 -0.0061 29 1 1.3330 4.5114 -0.0162 30 1 5.1350 2.5745 -0.0055 31 1 5.4575 -1.7130 2.9310 32 1 5.0094 0.0366 3.1158 33 1 2.6462 -0.5295 3.5520 34 1 3.7324 -0.4197 6.9528 35 1 2.1319 -1.8297 1.5265 36 1 3.4938 -2.9866 1.8457 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594825934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:45 Heat of formation + Delta-G solvation = -69.972395 kcal Electronic energy + Delta-G solvation = -24448.255663 eV Core-core repulsion = 20665.584831 eV Total energy + Delta-G solvation = -3782.670832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43196 -39.88239 -38.98943 -38.22132 -37.30647 -36.99664 -34.54795 -32.75867 -31.19840 -30.06080 -28.29283 -26.57572 -26.37152 -24.69539 -23.48553 -21.62496 -20.25802 -19.50365 -18.80453 -18.23522 -18.16731 -17.76872 -16.89365 -16.67415 -16.52655 -16.37956 -15.74986 -15.61464 -15.14186 -14.68626 -14.61322 -14.42754 -13.82948 -13.49272 -13.34188 -13.27194 -13.23415 -13.18871 -13.06999 -13.00149 -12.81822 -12.77268 -12.31391 -12.26584 -12.12640 -11.83851 -11.67308 -10.96960 -10.93533 -10.67790 -10.48936 -9.84100 -9.46565 -8.10706 -6.20289 -0.75960 -0.40399 -0.04351 0.98013 1.48282 1.52310 1.62406 1.84136 2.05292 2.21340 2.49893 2.66048 3.10047 3.23090 3.51873 3.65944 3.87757 4.15975 4.20652 4.26944 4.37914 4.39871 4.44016 4.48551 4.66854 4.72431 4.81513 4.85872 4.87653 4.91802 5.07958 5.14939 5.26373 5.67329 5.89221 5.93146 6.01667 6.34377 6.89623 7.48801 8.99317 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.004125 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.708530 B = 6785.945168 C = 7128.416375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.325 6.325 3 C 0.223 3.777 4 C -0.208 4.208 5 C -0.008 4.008 6 C -0.102 4.102 7 Cl -0.055 7.055 8 C 0.006 3.994 9 C -0.715 4.715 10 S 2.729 3.271 11 O -0.974 6.974 12 O -0.990 6.990 13 N -1.044 6.044 14 C 0.133 3.867 15 C 0.027 3.973 16 C -0.523 4.523 17 H 0.068 0.932 18 C 0.020 3.980 19 N -0.921 5.921 20 Si 0.955 3.045 21 H -0.263 1.263 22 H -0.286 1.286 23 H -0.283 1.283 24 C 0.139 3.861 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.185 0.815 29 H 0.181 0.819 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 8.540 -11.812 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.237 6.237 3 C 0.174 3.826 4 C -0.227 4.227 5 C -0.027 4.027 6 C -0.130 4.130 7 Cl -0.027 7.027 8 C -0.014 4.014 9 C -0.804 4.804 10 S 2.824 3.176 11 O -0.964 6.964 12 O -0.981 6.981 13 N -0.884 5.884 14 C 0.008 3.992 15 C 0.006 3.994 16 C -0.562 4.562 17 H 0.086 0.914 18 C -0.180 4.180 19 N -0.560 5.560 20 Si 0.781 3.219 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.209 1.209 24 C 0.015 3.985 25 H 0.104 0.896 26 H 0.140 0.860 27 H 0.096 0.904 28 H 0.202 0.798 29 H 0.198 0.802 30 H 0.169 0.831 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.626 8.412 -12.589 16.953 hybrid contribution -0.038 0.361 1.090 1.149 sum -7.664 8.773 -11.499 16.368 Atomic orbital electron populations 1.23650 0.74395 1.06788 1.03560 1.86185 1.25507 1.25817 1.86211 1.18630 0.90113 0.86563 0.87299 1.21715 1.02510 0.90199 1.08275 1.21554 0.91754 0.99671 0.89678 1.20909 0.93942 0.86830 1.11298 1.98367 1.80653 1.26407 1.97233 1.20736 1.01112 0.89186 0.90326 1.30034 1.05522 1.18755 1.26073 1.00338 0.72594 0.73277 0.71366 1.93509 1.80757 1.66637 1.55528 1.93491 1.33778 1.84070 1.86797 1.59694 1.47868 1.54857 1.26008 1.22912 0.99951 0.99712 0.76668 1.20392 0.92336 0.95827 0.90838 1.21372 1.49856 0.93522 0.91451 0.91368 1.25746 0.94384 0.96773 1.01073 1.70076 1.50226 1.15902 1.19759 0.85556 0.77301 0.79907 0.79164 1.18645 1.21180 1.20860 1.22719 0.91433 0.91040 0.93340 0.89626 0.85985 0.90394 0.79758 0.80172 0.83062 0.90950 0.93434 0.93756 0.92872 0.90346 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -9.07 8.30 -83.34 -0.69 -9.76 16 3 C 0.22 6.35 6.64 22.50 0.15 6.49 16 4 C -0.21 -4.19 9.04 22.36 0.20 -3.99 16 5 C -0.01 -0.16 9.82 22.28 0.22 0.06 16 6 C -0.10 -2.51 6.32 22.33 0.14 -2.37 16 7 Cl -0.06 -1.21 28.95 -2.72 -0.08 -1.29 16 8 C 0.01 0.19 9.33 22.28 0.21 0.40 16 9 C -0.71 -23.68 5.92 22.36 0.13 -23.55 16 10 S 2.73 105.87 5.86 -56.49 -0.33 105.54 16 11 O -0.97 -40.36 17.29 -122.89 -2.13 -42.48 16 12 O -0.99 -41.99 16.97 -128.00 -2.17 -44.17 16 13 N -1.04 -42.28 4.23 -549.37 -2.32 -44.61 16 14 C 0.13 5.95 8.31 83.28 0.69 6.64 16 15 C 0.03 1.27 3.79 -11.11 -0.04 1.22 16 16 C -0.52 -26.26 8.83 25.60 0.23 -26.03 16 17 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 18 C 0.02 1.04 5.46 84.66 0.46 1.50 16 19 N -0.92 -50.65 13.26 21.45 0.28 -50.36 16 20 Si 0.95 40.83 29.54 68.60 2.03 42.86 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.14 5.49 8.29 83.19 0.69 6.18 16 25 H 0.09 0.93 7.65 -2.39 -0.02 0.91 16 26 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16 28 H 0.19 2.16 6.30 -2.91 -0.02 2.14 16 29 H 0.18 2.04 8.06 -2.92 -0.02 2.02 16 30 H 0.15 4.55 7.33 -2.91 -0.02 4.53 16 31 H 0.07 3.20 8.10 -2.39 -0.02 3.18 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.04 2.24 8.11 -2.39 -0.02 2.22 16 34 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 35 H 0.08 2.77 7.14 -2.39 -0.02 2.75 16 36 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 Total: -1.00 -67.37 338.15 -0.11 -67.48 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.11 Total: 8.97 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 4.19 Total: -32.18 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -2.04 Total: -94.97 kcal Atomic # 8 Polarization: -91.42 SS G_CDS: -4.99 Total: -96.41 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 105.87 SS G_CDS: -0.33 Total: 105.54 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -67.37 -0.11 -67.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.494 kcal (2) G-P(sol) polarization free energy of solvation -67.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds