Wall clock time and date at job start Tue Mar 31 2020 15:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35926 * 116.99870 * 2 1 4 4 C 1.38752 * 120.03988 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.95326 * 180.02562 * 4 3 2 6 6 C 1.38387 * 120.04674 * 0.02562 * 5 4 3 7 7 Cl 1.73596 * 119.96091 * 179.97438 * 6 5 4 8 8 C 1.38345 * 120.08488 * 359.97438 * 6 5 4 9 9 S 1.76196 * 119.98101 * 179.72873 * 8 6 5 10 10 O 1.42095 * 106.40579 * 48.53644 * 9 8 6 11 11 O 1.42101 * 106.40397 * 181.45958 * 9 8 6 12 12 N 1.65604 * 107.21541 * 294.99780 * 9 8 6 13 13 C 1.47067 * 136.05711 * 269.62681 * 12 9 8 14 14 C 1.53762 * 87.88460 * 152.96479 * 13 12 9 15 15 C 1.50699 * 114.26453 * 139.79392 * 14 13 12 16 16 H 1.08007 * 120.00343 * 266.47761 * 15 14 13 17 17 C 1.37877 * 120.00435 * 86.47450 * 15 14 13 18 18 N 1.31521 * 119.99416 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00471 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47286 * 119.99930 * 19 17 15 22 22 H 1.48502 * 109.47032 * 240.00183 * 19 17 15 23 23 C 1.47069 * 136.05730 * 89.99861 * 12 9 8 24 24 C 1.38165 * 120.03991 * 0.02562 * 8 6 5 25 25 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.47433 * 299.99594 * 1 2 3 27 27 H 1.09000 * 109.47436 * 59.99517 * 1 2 3 28 28 H 1.07995 * 120.02092 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.97834 * 179.97438 * 5 4 3 30 30 H 1.08997 * 113.47089 * 267.69317 * 13 12 9 31 31 H 1.08999 * 113.46710 * 38.13918 * 13 12 9 32 32 H 1.08993 * 114.39467 * 272.67396 * 14 13 12 33 33 H 0.97001 * 119.99394 * 180.02562 * 18 17 15 34 34 H 1.08999 * 113.46852 * 321.86764 * 23 12 9 35 35 H 1.09010 * 113.46461 * 92.24830 * 23 12 9 36 36 H 1.08002 * 120.02292 * 179.97438 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2911 2.3753 0.0005 5 6 1.9200 3.6050 0.0000 6 6 3.3020 3.6765 -0.0016 7 17 4.0901 5.2233 -0.0030 8 6 4.0564 2.5169 -0.0021 9 16 5.8158 2.6111 -0.0114 10 8 6.1735 3.5367 1.0056 11 8 6.2892 1.2716 -0.0447 12 7 6.2621 3.3007 -1.4494 13 6 6.6012 2.8163 -2.7960 14 6 6.1207 4.1709 -3.3422 15 6 6.9769 4.7314 -4.4485 16 1 7.7762 5.4198 -4.2167 17 6 6.7399 4.3656 -5.7565 18 7 5.7669 3.5269 -6.0387 19 14 7.8016 5.0598 -7.1277 20 1 8.8199 5.9738 -6.5508 21 1 8.4807 3.9475 -7.8395 22 1 6.9478 5.8107 -8.0829 23 6 6.5003 4.6665 -1.9400 24 6 3.4310 1.2848 -0.0016 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.2126 2.3199 0.0014 29 1 1.3328 4.5114 0.0000 30 1 7.6679 2.6441 -2.9396 31 1 5.9902 1.9742 -3.1209 32 1 5.0534 4.2161 -3.5585 33 1 5.6004 3.2692 -6.9589 34 1 5.8034 5.4006 -1.5357 35 1 7.5403 4.9824 -1.8570 36 1 4.0202 0.3797 -0.0025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594827099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:48 Heat of formation + Delta-G solvation = -63.967459 kcal Electronic energy + Delta-G solvation = -24205.331925 eV Core-core repulsion = 20422.921486 eV Total energy + Delta-G solvation = -3782.410438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36062 -39.92848 -38.95545 -38.39661 -37.42970 -37.05753 -34.55260 -32.73553 -31.29305 -30.09573 -28.26105 -26.63541 -26.40200 -24.56649 -23.74439 -21.64630 -20.33946 -19.49754 -18.67120 -18.30170 -17.82353 -17.78128 -17.32740 -16.84266 -16.74002 -16.41630 -15.79154 -15.31397 -15.02608 -14.79665 -14.63153 -14.48482 -13.96151 -13.55036 -13.50211 -13.36996 -13.33239 -13.27994 -13.20705 -12.90224 -12.78808 -12.58576 -12.38329 -12.25799 -12.14595 -11.89321 -11.71539 -10.95180 -10.90628 -10.69866 -10.48245 -9.88694 -9.41311 -8.10699 -6.20197 -0.89638 -0.53121 -0.06710 0.79072 1.48438 1.52217 1.62467 1.79161 2.10356 2.18401 2.49899 2.59184 3.06338 3.22526 3.43562 3.70034 3.82502 4.02090 4.17329 4.32273 4.38454 4.40327 4.43857 4.51201 4.64284 4.68777 4.77547 4.81547 4.84061 4.90071 5.04855 5.12073 5.15807 5.67133 5.87124 5.91102 6.16371 6.33622 6.89364 7.48708 8.99402 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.004261 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.897673 B = 6569.135814 C = 7128.939417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.327 6.327 3 C 0.113 3.887 4 C -0.132 4.132 5 C -0.083 4.083 6 C -0.001 4.001 7 Cl -0.046 7.046 8 C -0.641 4.641 9 S 2.718 3.282 10 O -0.964 6.964 11 O -0.982 6.982 12 N -1.042 6.042 13 C 0.135 3.865 14 C 0.027 3.973 15 C -0.524 4.524 16 H 0.068 0.932 17 C 0.021 3.979 18 N -0.920 5.920 19 Si 0.955 3.045 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.132 3.868 24 C -0.065 4.065 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.189 0.811 29 H 0.178 0.822 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.460 -2.332 11.717 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.241 6.241 3 C 0.066 3.934 4 C -0.150 4.150 5 C -0.102 4.102 6 C -0.030 4.030 7 Cl -0.017 7.017 8 C -0.728 4.728 9 S 2.812 3.188 10 O -0.954 6.954 11 O -0.973 6.973 12 N -0.883 5.883 13 C 0.010 3.990 14 C 0.005 3.995 15 C -0.563 4.563 16 H 0.086 0.914 17 C -0.179 4.179 18 N -0.559 5.559 19 Si 0.781 3.219 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.008 3.992 24 C -0.085 4.085 25 H 0.141 0.859 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.206 0.794 29 H 0.195 0.805 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.918 -2.874 12.495 18.200 hybrid contribution -0.179 0.294 -1.061 1.115 sum -13.097 -2.580 11.434 17.576 Atomic orbital electron populations 1.23555 0.75358 1.06412 1.03078 1.86125 1.24385 1.25386 1.88163 1.19112 0.91661 0.86068 0.96563 1.21927 1.02650 0.90167 1.00295 1.21378 0.90991 1.00371 0.97446 1.20592 0.94500 0.85652 1.02212 1.98426 1.79638 1.27374 1.96249 1.30642 1.27261 0.97943 1.16989 1.00824 0.73998 0.72319 0.71692 1.93556 1.82416 1.64095 1.55345 1.93504 1.79673 1.37508 1.86633 1.59696 1.81877 1.20568 1.26121 1.22933 0.99630 1.00220 0.76246 1.20400 0.96780 0.91628 0.90660 1.21362 1.16163 1.27298 0.91473 0.91409 1.25739 0.96080 0.95057 1.01040 1.70076 1.31503 1.34417 1.19857 0.85552 0.78956 0.78243 0.79155 1.18734 1.21021 1.20911 1.22906 1.00899 0.81733 0.93671 1.20201 0.93660 0.96206 0.98458 0.85939 0.90415 0.91004 0.79412 0.80489 0.90590 0.93152 0.93607 0.92840 0.90862 0.89970 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -6.93 10.50 -92.72 -0.97 -7.91 16 3 C 0.11 2.76 6.69 22.50 0.15 2.91 16 4 C -0.13 -2.47 9.04 22.36 0.20 -2.26 16 5 C -0.08 -1.81 9.82 22.28 0.22 -1.60 16 6 C 0.00 -0.04 6.30 22.33 0.14 0.10 16 7 Cl -0.05 -1.44 23.57 -2.72 -0.06 -1.50 16 8 C -0.64 -21.46 5.91 22.28 0.13 -21.33 16 9 S 2.72 104.65 5.60 -56.49 -0.32 104.33 16 10 O -0.96 -38.90 16.48 -128.00 -2.11 -41.01 16 11 O -0.98 -41.31 16.97 -128.00 -2.17 -43.48 16 12 N -1.04 -42.12 4.10 -549.43 -2.25 -44.37 16 13 C 0.13 6.00 8.31 83.27 0.69 6.69 16 14 C 0.03 1.25 3.79 -11.12 -0.04 1.20 16 15 C -0.52 -26.59 8.83 25.60 0.23 -26.37 16 16 H 0.07 3.32 7.81 -2.91 -0.02 3.29 16 17 C 0.02 1.08 5.46 84.65 0.46 1.54 16 18 N -0.92 -50.74 13.26 21.45 0.28 -50.46 16 19 Si 0.95 41.17 29.54 68.60 2.03 43.20 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.13 5.31 7.89 83.18 0.66 5.97 16 24 C -0.07 -2.00 9.49 22.36 0.21 -1.79 16 25 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 0.49 7.66 -2.38 -0.02 0.47 16 27 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 28 H 0.19 1.75 6.30 -2.91 -0.02 1.73 16 29 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 2.34 8.11 -2.39 -0.02 2.32 16 33 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 34 H 0.07 2.71 5.38 -2.39 -0.01 2.70 16 35 H 0.08 3.15 8.10 -2.38 -0.02 3.13 16 36 H 0.15 4.67 7.33 -2.91 -0.02 4.65 16 Total: -1.00 -66.86 331.78 -0.30 -67.16 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.12 Total: 7.76 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 4.16 Total: -33.72 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -1.97 Total: -94.83 kcal Atomic # 8 Polarization: -87.14 SS G_CDS: -5.25 Total: -92.39 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 104.65 SS G_CDS: -0.32 Total: 104.33 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.06 Total: -1.50 kcal Total: -66.86 -0.30 -67.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.193 kcal (2) G-P(sol) polarization free energy of solvation -66.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds