Wall clock time and date at job start Tue Mar 31 2020 15:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35920 * 116.99714 * 2 1 4 4 C 1.38709 * 120.06056 * 0.02562 * 3 2 1 5 5 C 1.38153 * 119.95434 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.07884 * 359.97141 * 5 4 3 7 7 S 1.76197 * 119.94033 * 180.02562 * 6 5 4 8 8 O 1.42097 * 106.40263 * 336.45718 * 7 6 5 9 9 O 1.42099 * 106.39921 * 203.53924 * 7 6 5 10 10 N 1.65601 * 107.22066 * 90.00082 * 7 6 5 11 11 C 1.47579 * 134.49386 * 89.99785 * 10 7 6 12 12 C 1.53950 * 86.11621 * 204.63973 * 11 10 7 13 13 C 1.50698 * 113.74185 * 221.94108 * 12 11 10 14 14 H 1.08004 * 119.99782 * 358.07289 * 13 12 11 15 15 C 1.37878 * 120.00154 * 178.07233 * 13 12 11 16 16 N 1.31517 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47027 * 60.00182 * 17 15 13 19 19 H 1.48504 * 109.47302 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47210 * 300.00668 * 17 15 13 21 21 C 1.47925 * 134.49825 * 269.99784 * 10 7 6 22 22 C 1.38244 * 120.11570 * 0.29401 * 6 5 4 23 23 C 1.38257 * 120.04604 * 359.46142 * 22 6 5 24 24 Cl 1.73597 * 120.04270 * 180.26841 * 23 22 6 25 25 H 1.09007 * 109.47480 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47351 * 299.99992 * 1 2 3 27 27 H 1.09004 * 109.46961 * 60.00422 * 1 2 3 28 28 H 1.07991 * 120.02090 * 0.04005 * 4 3 2 29 29 H 1.08004 * 119.96289 * 179.97438 * 5 4 3 30 30 H 1.09003 * 113.77049 * 90.34038 * 11 10 7 31 31 H 1.08993 * 113.77081 * 318.93800 * 11 10 7 32 32 H 1.09002 * 113.74276 * 90.74001 * 12 11 10 33 33 H 0.96999 * 119.99516 * 179.97438 * 16 15 13 34 34 H 1.09006 * 113.87423 * 41.10252 * 21 10 7 35 35 H 1.08997 * 113.77410 * 269.60424 * 21 10 7 36 36 H 1.08003 * 119.97499 * 179.70496 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2917 2.3752 0.0005 5 6 1.9211 3.6050 0.0000 6 6 3.3021 3.6768 -0.0005 7 16 4.1010 5.2472 -0.0005 8 8 3.1690 6.1716 -0.5445 9 8 5.3966 5.0381 -0.5454 10 7 4.3239 5.6838 1.5813 11 6 5.4014 5.4792 2.5688 12 6 4.3099 5.6548 3.6402 13 6 4.7410 6.4972 4.8130 14 1 5.7474 6.8867 4.8573 15 6 3.8506 6.7708 5.8296 16 7 2.6252 6.2961 5.7759 17 14 4.3851 7.8145 7.2837 18 1 4.8039 9.1557 6.8030 19 1 3.2515 7.9597 8.2321 20 1 5.5249 7.1574 7.9723 21 6 3.5231 6.4357 2.5720 22 6 4.0569 2.5186 -0.0065 23 6 3.4322 1.2852 -0.0009 24 17 4.3801 -0.1692 -0.0015 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 0.2132 2.3201 0.0016 29 1 1.3340 4.5115 0.0000 30 1 6.1510 6.2705 2.5715 31 1 5.8360 4.4800 2.5441 32 1 3.8348 4.7207 3.9399 33 1 1.9990 6.4883 6.4913 34 1 2.4592 6.1995 2.5500 35 1 3.7221 7.5073 2.5757 36 1 5.1353 2.5773 -0.0117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594827476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:00 Heat of formation + Delta-G solvation = -53.697021 kcal Electronic energy + Delta-G solvation = -23795.670115 eV Core-core repulsion = 20013.705036 eV Total energy + Delta-G solvation = -3781.965079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49651 -38.02884 -37.83687 -36.87236 -36.52192 -35.50430 -32.61055 -31.20535 -30.68684 -28.26836 -27.73314 -25.18452 -24.48741 -23.19341 -22.90555 -19.82329 -18.89491 -18.36255 -17.54658 -16.89705 -16.74600 -16.42345 -16.18692 -15.35859 -15.23732 -14.61071 -14.33369 -14.30207 -14.02484 -13.60466 -13.40863 -13.08445 -12.78915 -12.42529 -11.82101 -11.80085 -11.73452 -11.71110 -11.62519 -11.54255 -11.50413 -11.33826 -11.22359 -10.98752 -10.74881 -10.55786 -10.35347 -9.31745 -9.23302 -9.07250 -8.71799 -8.59611 -8.22906 -6.16400 -4.20898 0.52227 0.82187 0.90174 1.97145 2.77029 3.03824 3.26849 3.32130 3.34489 3.49647 4.09386 4.31741 4.34885 4.47633 4.59673 4.79839 4.82653 4.97209 5.13025 5.14534 5.19632 5.39467 5.42990 5.69878 5.77987 5.83652 6.16746 6.23205 6.25589 6.37467 6.49025 6.69147 6.82210 6.83339 7.48618 7.63095 7.81645 8.20796 8.81581 9.45112 10.93158 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.003733 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.379057 B = 7499.802486 C = 8136.811076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.301 6.301 3 C 0.185 3.815 4 C -0.219 4.219 5 C 0.029 3.971 6 C -0.695 4.695 7 S 2.705 3.295 8 O -0.964 6.964 9 O -0.967 6.967 10 N -1.041 6.041 11 C 0.127 3.873 12 C 0.036 3.964 13 C -0.519 4.519 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.888 5.888 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.137 3.863 22 C 0.028 3.972 23 C -0.091 4.091 24 Cl -0.052 7.052 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.264 0.736 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -10.788 -10.754 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.213 6.213 3 C 0.137 3.863 4 C -0.238 4.238 5 C 0.009 3.991 6 C -0.780 4.780 7 S 2.797 3.203 8 O -0.955 6.955 9 O -0.957 6.957 10 N -0.883 5.883 11 C 0.002 3.998 12 C 0.015 3.985 13 C -0.558 4.558 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.013 3.987 22 C 0.008 3.992 23 C -0.119 4.119 24 Cl -0.023 7.023 25 H 0.124 0.876 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.167 0.833 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.068 -10.751 -11.655 16.370 hybrid contribution -0.454 -0.151 1.012 1.120 sum -4.522 -10.903 -10.643 15.893 Atomic orbital electron populations 1.23223 0.77437 1.04621 1.02023 1.86181 1.22152 1.25792 1.87179 1.18906 0.90622 0.85248 0.91518 1.21313 1.00677 0.91491 1.10337 1.20831 0.92426 0.98440 0.87363 1.31233 1.05053 1.21870 1.19841 1.01397 0.73300 0.73297 0.72316 1.93535 1.65033 1.60002 1.76898 1.93531 1.38655 1.86548 1.76992 1.60165 1.32228 1.68349 1.27600 1.23048 0.91449 0.99657 0.85662 1.20612 0.90538 0.96757 0.90605 1.21017 0.98409 1.32239 1.04130 0.91857 1.25012 0.94907 0.95607 0.98021 1.69934 1.04595 1.44416 1.33524 0.86621 0.78158 0.80885 0.82127 1.20075 1.21329 1.20122 1.23292 0.95238 0.96231 0.83964 1.20659 1.00722 0.88594 0.89220 1.20169 0.88869 0.89131 1.13736 1.98366 1.71345 1.35360 1.97208 0.87634 0.91843 0.92099 0.83659 0.83291 0.90494 0.92174 0.91864 0.92657 0.91957 0.90590 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.30 -3.41 9.96 -19.49 -0.19 -3.61 16 3 C 0.18 2.39 6.68 -39.19 -0.26 2.13 16 4 C -0.22 -2.61 9.04 -39.44 -0.36 -2.97 16 5 C 0.03 0.40 9.52 -39.60 -0.38 0.02 16 6 C -0.69 -10.68 5.97 -39.56 -0.24 -10.92 16 7 S 2.70 47.43 6.24 -107.50 -0.67 46.76 16 8 O -0.96 -18.59 17.25 -57.17 -0.99 -19.58 16 9 O -0.97 -18.42 17.24 -57.17 -0.99 -19.41 16 10 N -1.04 -19.52 4.12 -118.52 -0.49 -20.01 16 11 C 0.13 2.40 8.53 -2.97 -0.03 2.38 16 12 C 0.04 0.81 3.60 -90.84 -0.33 0.48 16 13 C -0.52 -12.85 8.77 -34.44 -0.30 -13.15 16 14 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -23.64 13.29 55.43 0.74 -22.90 16 17 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 21 C 0.14 2.85 8.55 -2.77 -0.02 2.83 16 22 C 0.03 0.41 9.30 -39.57 -0.37 0.04 16 23 C -0.09 -1.28 6.33 -39.36 -0.25 -1.53 16 24 Cl -0.05 -0.67 28.50 -51.86 -1.48 -2.15 16 25 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 28 H 0.15 1.25 6.30 -52.49 -0.33 0.92 16 29 H 0.15 1.86 7.61 -52.48 -0.40 1.46 16 30 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 36 H 0.16 2.12 7.61 -52.48 -0.40 1.72 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -30.25 340.73 -9.59 -39.83 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.00 Total: -0.95 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -1.63 Total: -17.92 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.25 Total: -42.92 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -2.17 Total: -42.59 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 47.43 SS G_CDS: -0.67 Total: 46.76 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.25 -9.59 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.865 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds