Wall clock time and date at job start Tue Mar 31 2020 15:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35920 * 116.99714 * 2 1 4 4 C 1.38709 * 120.06056 * 0.02562 * 3 2 1 5 5 C 1.38153 * 119.95434 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.07884 * 359.97141 * 5 4 3 7 7 S 1.76197 * 119.94033 * 180.02562 * 6 5 4 8 8 O 1.42097 * 106.40263 * 336.45718 * 7 6 5 9 9 O 1.42099 * 106.39921 * 203.53924 * 7 6 5 10 10 N 1.65601 * 107.22066 * 90.00082 * 7 6 5 11 11 C 1.47579 * 134.49386 * 89.99785 * 10 7 6 12 12 C 1.53950 * 86.11621 * 204.63973 * 11 10 7 13 13 C 1.50698 * 113.74185 * 221.94108 * 12 11 10 14 14 H 1.08004 * 119.99782 * 358.07289 * 13 12 11 15 15 C 1.37878 * 120.00154 * 178.07233 * 13 12 11 16 16 N 1.31517 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47027 * 60.00182 * 17 15 13 19 19 H 1.48504 * 109.47302 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47210 * 300.00668 * 17 15 13 21 21 C 1.47925 * 134.49825 * 269.99784 * 10 7 6 22 22 C 1.38244 * 120.11570 * 0.29401 * 6 5 4 23 23 C 1.38257 * 120.04604 * 359.46142 * 22 6 5 24 24 Cl 1.73597 * 120.04270 * 180.26841 * 23 22 6 25 25 H 1.09007 * 109.47480 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47351 * 299.99992 * 1 2 3 27 27 H 1.09004 * 109.46961 * 60.00422 * 1 2 3 28 28 H 1.07991 * 120.02090 * 0.04005 * 4 3 2 29 29 H 1.08004 * 119.96289 * 179.97438 * 5 4 3 30 30 H 1.09003 * 113.77049 * 90.34038 * 11 10 7 31 31 H 1.08993 * 113.77081 * 318.93800 * 11 10 7 32 32 H 1.09002 * 113.74276 * 90.74001 * 12 11 10 33 33 H 0.96999 * 119.99516 * 179.97438 * 16 15 13 34 34 H 1.09006 * 113.87423 * 41.10252 * 21 10 7 35 35 H 1.08997 * 113.77410 * 269.60424 * 21 10 7 36 36 H 1.08003 * 119.97499 * 179.70496 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2917 2.3752 0.0005 5 6 1.9211 3.6050 0.0000 6 6 3.3021 3.6768 -0.0005 7 16 4.1010 5.2472 -0.0005 8 8 3.1690 6.1716 -0.5445 9 8 5.3966 5.0381 -0.5454 10 7 4.3239 5.6838 1.5813 11 6 5.4014 5.4792 2.5688 12 6 4.3099 5.6548 3.6402 13 6 4.7410 6.4972 4.8130 14 1 5.7474 6.8867 4.8573 15 6 3.8506 6.7708 5.8296 16 7 2.6252 6.2961 5.7759 17 14 4.3851 7.8145 7.2837 18 1 4.8039 9.1557 6.8030 19 1 3.2515 7.9597 8.2321 20 1 5.5249 7.1574 7.9723 21 6 3.5231 6.4357 2.5720 22 6 4.0569 2.5186 -0.0065 23 6 3.4322 1.2852 -0.0009 24 17 4.3801 -0.1692 -0.0015 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 0.2132 2.3201 0.0016 29 1 1.3340 4.5115 0.0000 30 1 6.1510 6.2705 2.5715 31 1 5.8360 4.4800 2.5441 32 1 3.8348 4.7207 3.9399 33 1 1.9990 6.4883 6.4913 34 1 2.4592 6.1995 2.5500 35 1 3.7221 7.5073 2.5757 36 1 5.1353 2.5773 -0.0117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594827476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:59 Heat of formation + Delta-G solvation = -73.417859 kcal Electronic energy + Delta-G solvation = -23796.525275 eV Core-core repulsion = 20013.705036 eV Total energy + Delta-G solvation = -3782.820239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.42858 -39.65201 -38.78040 -38.34117 -37.55298 -36.98476 -34.51230 -32.22420 -31.68735 -29.99049 -28.41074 -26.78176 -26.29397 -24.25074 -23.89928 -21.48023 -20.06850 -19.56345 -18.95794 -18.27498 -18.11536 -17.86897 -16.96755 -16.72499 -16.41789 -16.31779 -15.70368 -15.32452 -15.18315 -14.68312 -14.62047 -14.43981 -14.35925 -13.46773 -13.33675 -13.27571 -13.20348 -13.10536 -13.07352 -12.81288 -12.75621 -12.50633 -12.38707 -12.30534 -12.27285 -12.12232 -11.83499 -11.01830 -10.89252 -10.49935 -10.24577 -9.83908 -9.69824 -8.09428 -6.18481 -0.75731 -0.37393 -0.13613 0.93934 1.51776 1.52676 1.59297 1.83267 1.96965 2.22388 2.50784 2.72117 3.07279 3.23968 3.47657 3.59366 3.90791 4.09554 4.11112 4.25737 4.34484 4.37674 4.44242 4.48771 4.67822 4.68641 4.72509 4.82191 4.82699 4.90714 5.06539 5.18522 5.24030 5.68850 5.90734 5.95662 5.98580 6.34758 6.89451 7.50157 8.99878 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.003733 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.379057 B = 7499.802486 C = 8136.811076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.311 6.311 3 C 0.189 3.811 4 C -0.211 4.211 5 C 0.019 3.981 6 C -0.706 4.706 7 S 2.722 3.278 8 O -0.984 6.984 9 O -0.983 6.983 10 N -1.042 6.042 11 C 0.132 3.868 12 C 0.024 3.976 13 C -0.530 4.530 14 H 0.066 0.934 15 C 0.022 3.978 16 N -0.918 5.918 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.289 1.289 20 H -0.272 1.272 21 C 0.141 3.859 22 C 0.018 3.982 23 C -0.106 4.106 24 Cl -0.047 7.047 25 H 0.128 0.872 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.182 0.818 29 H 0.159 0.841 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -11.651 -11.094 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.223 6.223 3 C 0.140 3.860 4 C -0.230 4.230 5 C -0.001 4.001 6 C -0.794 4.794 7 S 2.818 3.182 8 O -0.974 6.974 9 O -0.974 6.974 10 N -0.883 5.883 11 C 0.007 3.993 12 C 0.003 3.997 13 C -0.569 4.569 14 H 0.084 0.916 15 C -0.178 4.178 16 N -0.557 5.557 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.215 1.215 20 H -0.197 1.197 21 C 0.016 3.984 22 C -0.002 4.002 23 C -0.134 4.134 24 Cl -0.018 7.018 25 H 0.146 0.854 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.199 0.801 29 H 0.176 0.824 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.723 -11.583 -11.991 17.328 hybrid contribution -0.322 -0.053 1.049 1.098 sum -5.045 -11.637 -10.942 16.751 Atomic orbital electron populations 1.23619 0.74992 1.06648 1.03258 1.86189 1.24649 1.24953 1.86492 1.19054 0.90448 0.86242 0.90236 1.21651 1.02407 0.90245 1.08706 1.21085 0.91903 0.99806 0.87279 1.30754 1.05836 1.20321 1.22536 1.00624 0.72730 0.73567 0.71328 1.93505 1.65325 1.61570 1.77040 1.93504 1.39867 1.87027 1.77005 1.60046 1.31787 1.68612 1.27817 1.23000 0.90883 1.01190 0.84186 1.20549 0.92347 0.95748 0.91092 1.21389 0.98487 1.31994 1.04995 0.91599 1.25690 0.94984 0.96773 1.00385 1.70038 1.05485 1.45897 1.34267 0.85713 0.77640 0.79558 0.79319 1.19627 1.21522 1.19688 1.23031 0.95179 0.95902 0.84289 1.20729 1.01020 0.88828 0.89588 1.20300 0.89755 0.89105 1.14242 1.98362 1.71344 1.34874 1.97212 0.85417 0.90975 0.90393 0.80111 0.82360 0.89814 0.90064 0.94009 0.92856 0.92056 0.91077 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.31 -6.25 9.96 -92.65 -0.92 -7.18 16 3 C 0.19 4.49 6.68 22.52 0.15 4.64 16 4 C -0.21 -4.51 9.04 22.36 0.20 -4.30 16 5 C 0.02 0.49 9.52 22.26 0.21 0.70 16 6 C -0.71 -21.20 5.97 22.28 0.13 -21.06 16 7 S 2.72 94.62 6.24 -56.49 -0.35 94.26 16 8 O -0.98 -37.66 17.25 -128.00 -2.21 -39.86 16 9 O -0.98 -37.11 17.24 -128.00 -2.21 -39.32 16 10 N -1.04 -38.88 4.12 -528.90 -2.18 -41.06 16 11 C 0.13 4.95 8.53 86.49 0.74 5.69 16 12 C 0.02 1.08 3.60 -10.88 -0.04 1.04 16 13 C -0.53 -26.29 8.77 25.60 0.22 -26.06 16 14 H 0.07 3.15 7.81 -2.91 -0.02 3.13 16 15 C 0.02 1.11 5.46 84.65 0.46 1.57 16 16 N -0.92 -49.41 13.29 21.45 0.28 -49.12 16 17 Si 0.95 40.57 29.54 68.60 2.03 42.59 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 C 0.14 5.91 8.55 86.42 0.74 6.65 16 22 C 0.02 0.53 9.30 22.28 0.21 0.73 16 23 C -0.11 -2.84 6.33 22.41 0.14 -2.70 16 24 Cl -0.05 -1.16 28.50 -2.72 -0.08 -1.24 16 25 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.07 0.66 7.66 -2.39 -0.02 0.65 16 27 H 0.08 0.58 7.66 -2.38 -0.02 0.56 16 28 H 0.18 2.44 6.30 -2.92 -0.02 2.42 16 29 H 0.16 3.75 7.61 -2.91 -0.02 3.73 16 30 H 0.08 3.01 8.09 -2.39 -0.02 2.99 16 31 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 34 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 35 H 0.07 3.01 8.09 -2.39 -0.02 3.00 16 36 H 0.16 4.28 7.61 -2.91 -0.02 4.25 16 Total: -1.00 -63.92 340.73 -0.24 -64.16 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.11 Total: 8.69 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 4.28 Total: -31.92 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -1.90 Total: -90.19 kcal Atomic # 8 Polarization: -81.03 SS G_CDS: -5.34 Total: -86.36 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 94.62 SS G_CDS: -0.35 Total: 94.26 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -63.92 -0.24 -64.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.256 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds