Wall clock time and date at job start Tue Mar 31 2020 16:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48499 * 109.47349 * 264.98306 * 3 2 1 5 5 H 1.48500 * 109.47169 * 24.98779 * 3 2 1 6 6 H 1.48499 * 109.46786 * 144.98471 * 3 2 1 7 7 C 1.37872 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99666 * 185.16594 * 7 2 1 9 9 C 1.50696 * 120.00324 * 5.16915 * 7 2 1 10 10 O 1.42891 * 110.89073 * 59.46063 * 9 7 2 11 11 C 1.55160 * 111.00455 * 183.34668 * 9 7 2 12 12 C 1.54326 * 102.93981 * 153.61097 * 11 9 7 13 13 N 1.47027 * 107.27415 * 337.80715 * 12 11 9 14 14 C 1.34775 * 125.64627 * 178.91253 * 13 12 11 15 15 O 1.21579 * 119.99533 * 180.02562 * 14 13 12 16 16 C 1.47614 * 120.00264 * 0.02562 * 14 13 12 17 17 C 1.39887 * 120.16814 * 270.00762 * 16 14 13 18 18 F 1.35101 * 120.07736 * 359.97438 * 17 16 14 19 19 C 1.38220 * 119.84150 * 179.97438 * 17 16 14 20 20 C 1.38286 * 120.18096 * 359.96896 * 19 17 16 21 21 C 1.38519 * 120.33815 * 0.02562 * 20 19 17 22 22 F 1.35098 * 119.92307 * 180.02562 * 21 20 19 23 23 C 1.38282 * 120.15420 * 359.78604 * 21 20 19 24 24 Cl 1.73598 * 120.09279 * 180.25736 * 23 21 20 25 25 C 1.47529 * 108.71254 * 358.94046 * 13 12 11 26 26 H 0.97004 * 120.00275 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00352 * 294.09185 * 10 9 7 28 28 H 1.08994 * 110.71711 * 271.97246 * 11 9 7 29 29 H 1.08999 * 110.71918 * 35.25314 * 11 9 7 30 30 H 1.09001 * 109.88138 * 97.22545 * 12 11 9 31 31 H 1.09001 * 109.87910 * 218.23402 * 12 11 9 32 32 H 1.08006 * 119.90994 * 180.02562 * 19 17 16 33 33 H 1.07998 * 119.82786 * 180.02562 * 20 19 17 34 34 H 1.08993 * 110.36909 * 265.30777 * 25 13 12 35 35 H 1.08997 * 110.40302 * 142.95324 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3975 2.6809 0.5914 6 1 3.4896 1.4731 0.8034 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0837 9 6 1.2556 -2.4964 -0.1187 10 8 0.5059 -2.5446 -1.3341 11 6 2.2224 -3.7054 -0.0133 12 6 1.3124 -4.8297 0.5248 13 7 0.1686 -4.1860 1.1875 14 6 -0.8641 -4.8268 1.7699 15 8 -1.7595 -4.1895 2.2899 16 6 -0.9082 -6.3023 1.7765 17 6 -1.5294 -6.9917 0.7297 18 9 -2.0918 -6.3086 -0.2913 19 6 -1.5663 -8.3733 0.7424 20 6 -0.9907 -9.0746 1.7860 21 6 -0.3736 -8.3995 2.8264 22 9 0.1865 -9.0931 3.8415 23 6 -0.3252 -7.0176 2.8258 24 17 0.4544 -6.1734 4.1270 25 6 0.3382 -2.7226 1.1089 26 1 -0.4851 0.8401 -0.0004 27 1 -0.2132 -1.8996 -1.3786 28 1 2.6205 -3.9674 -0.9935 29 1 3.0295 -3.4937 0.6881 30 1 0.9619 -5.4497 -0.3004 31 1 1.8623 -5.4412 1.2402 32 1 -2.0452 -8.9067 -0.0655 33 1 -1.0225 -10.1541 1.7900 34 1 0.8157 -2.3469 2.0138 35 1 -0.6253 -2.2361 0.9573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598742200.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:33 Heat of formation + Delta-G solvation = -145.077266 kcal Electronic energy + Delta-G solvation = -26552.238366 eV Core-core repulsion = 22212.470356 eV Total energy + Delta-G solvation = -4339.768010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.30210 -49.15523 -40.03018 -38.59403 -37.15202 -36.79269 -34.32320 -32.25354 -31.83761 -30.45575 -30.01000 -27.89879 -25.69525 -24.19875 -23.21048 -22.46451 -19.85964 -19.61514 -18.04570 -17.79506 -17.66052 -17.15765 -16.56978 -16.16444 -15.65502 -15.39528 -15.16250 -14.98051 -14.79089 -14.68569 -14.35004 -13.86724 -13.20716 -13.13063 -13.06334 -12.85767 -12.81193 -12.32307 -11.83654 -11.70630 -11.63527 -11.49994 -11.26868 -11.05049 -10.88176 -10.67019 -10.48169 -10.24295 -9.78631 -9.43583 -9.37181 -8.92696 -8.72250 -8.41926 -7.92844 -6.30021 -4.39309 0.35054 0.43492 1.63099 2.73265 2.75355 3.19727 3.26324 3.28626 3.30639 3.73219 3.80321 4.15280 4.25346 4.48056 4.51846 4.84941 4.97116 5.25273 5.33682 5.34906 5.43453 5.54157 5.59889 5.73720 5.96298 6.07536 6.19255 6.43601 6.65981 6.78769 6.83895 7.17237 7.28233 7.71673 7.97992 8.01364 8.43907 8.64030 9.26704 9.34001 10.77237 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.003896 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.303530 B = 7185.138895 C = 7713.565280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.580 6.580 11 C -0.116 4.116 12 C 0.101 3.899 13 N -0.591 5.591 14 C 0.568 3.432 15 O -0.525 6.525 16 C -0.110 4.110 17 C 0.136 3.864 18 F -0.113 7.113 19 C -0.122 4.122 20 C -0.104 4.104 21 C 0.098 3.902 22 F -0.120 7.120 23 C -0.024 4.024 24 Cl -0.018 7.018 25 C 0.095 3.905 26 H 0.271 0.729 27 H 0.380 0.620 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.066 0.934 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -18.047 2.854 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.210 3.790 10 O -0.388 6.388 11 C -0.154 4.154 12 C -0.022 4.022 13 N -0.323 5.323 14 C 0.352 3.648 15 O -0.402 6.402 16 C -0.116 4.116 17 C 0.116 3.884 18 F -0.091 7.091 19 C -0.141 4.141 20 C -0.123 4.123 21 C 0.077 3.923 22 F -0.099 7.099 23 C -0.053 4.053 24 Cl 0.011 6.989 25 C -0.026 4.026 26 H 0.081 0.919 27 H 0.230 0.770 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.084 0.916 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.663 -17.990 3.156 18.276 hybrid contribution 0.084 1.361 0.319 1.400 sum -0.579 -16.629 3.474 16.998 Atomic orbital electron populations 1.69731 1.06015 1.27997 1.49238 1.25063 0.95010 0.99761 0.93220 0.86421 0.79701 0.82335 0.78460 1.20279 1.21078 1.19757 1.21427 0.93979 0.90101 1.52160 0.91455 1.19615 0.86832 0.91746 0.80856 1.86122 1.50143 1.62515 1.40064 1.22620 0.97408 0.94423 1.00916 1.22068 0.87576 0.96687 0.95853 1.48736 1.20322 1.10093 1.53126 1.17201 0.82532 0.84973 0.80064 1.90829 1.37020 1.66536 1.45820 1.19950 1.01080 0.96115 0.94411 1.17483 0.96061 0.89638 0.85233 1.91628 1.81854 1.79777 1.55859 1.21052 1.01294 0.91406 1.00302 1.21031 0.97561 1.01585 0.92075 1.17164 0.99668 0.87276 0.88162 1.91569 1.82692 1.78441 1.57160 1.20698 1.00821 0.90747 0.93044 1.98441 1.77968 1.76936 1.45540 1.23474 1.03041 0.75137 1.00935 0.91950 0.76990 0.90483 0.90183 0.92213 0.92523 0.82349 0.82329 0.91581 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.53 10.76 55.43 0.60 -22.93 16 2 C 0.07 1.88 5.31 -17.82 -0.09 1.79 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -13.75 8.25 -34.44 -0.28 -14.04 16 8 H 0.07 1.68 7.79 -52.49 -0.41 1.27 16 9 C 0.25 5.91 0.86 -89.62 -0.08 5.84 16 10 O -0.58 -14.47 13.14 -35.23 -0.46 -14.94 16 11 C -0.12 -2.24 6.13 -24.89 -0.15 -2.40 16 12 C 0.10 1.79 6.47 -3.06 -0.02 1.77 16 13 N -0.59 -12.17 3.33 -171.63 -0.57 -12.74 16 14 C 0.57 11.56 5.98 -12.44 -0.07 11.49 16 15 O -0.52 -12.54 17.36 5.30 0.09 -12.44 16 16 C -0.11 -1.77 4.82 -104.89 -0.51 -2.27 16 17 C 0.14 1.87 7.29 -38.97 -0.28 1.58 16 18 F -0.11 -1.78 16.83 2.25 0.04 -1.74 16 19 C -0.12 -1.11 10.01 -39.57 -0.40 -1.50 16 20 C -0.10 -0.85 10.01 -39.46 -0.40 -1.25 16 21 C 0.10 1.09 7.26 -39.46 -0.29 0.80 16 22 F -0.12 -1.33 16.83 2.25 0.04 -1.29 16 23 C -0.02 -0.34 6.36 -39.01 -0.25 -0.59 16 24 Cl -0.02 -0.27 27.70 -51.86 -1.44 -1.71 16 25 C 0.09 2.24 5.42 -2.47 -0.01 2.23 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.38 9.75 7.59 45.56 0.35 10.10 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 35 H 0.09 2.39 7.36 -51.93 -0.38 2.00 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -29.51 328.60 -7.13 -36.65 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -2.53 Total: 7.61 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.83 Total: 3.44 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.02 Total: -35.67 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.37 Total: -27.38 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.04 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.44 Total: -1.71 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.51 -7.13 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598742200.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.429 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds