Wall clock time and date at job start Tue Mar 31 2020 16:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48499 * 109.47349 * 264.98306 * 3 2 1 5 5 H 1.48500 * 109.47169 * 24.98779 * 3 2 1 6 6 H 1.48499 * 109.46786 * 144.98471 * 3 2 1 7 7 C 1.37872 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99666 * 185.16594 * 7 2 1 9 9 C 1.50696 * 120.00324 * 5.16915 * 7 2 1 10 10 O 1.42891 * 110.89073 * 59.46063 * 9 7 2 11 11 C 1.55160 * 111.00455 * 183.34668 * 9 7 2 12 12 C 1.54326 * 102.93981 * 153.61097 * 11 9 7 13 13 N 1.47027 * 107.27415 * 337.80715 * 12 11 9 14 14 C 1.34775 * 125.64627 * 178.91253 * 13 12 11 15 15 O 1.21579 * 119.99533 * 180.02562 * 14 13 12 16 16 C 1.47614 * 120.00264 * 0.02562 * 14 13 12 17 17 C 1.39887 * 120.16814 * 270.00762 * 16 14 13 18 18 F 1.35101 * 120.07736 * 359.97438 * 17 16 14 19 19 C 1.38220 * 119.84150 * 179.97438 * 17 16 14 20 20 C 1.38286 * 120.18096 * 359.96896 * 19 17 16 21 21 C 1.38519 * 120.33815 * 0.02562 * 20 19 17 22 22 F 1.35098 * 119.92307 * 180.02562 * 21 20 19 23 23 C 1.38282 * 120.15420 * 359.78604 * 21 20 19 24 24 Cl 1.73598 * 120.09279 * 180.25736 * 23 21 20 25 25 C 1.47529 * 108.71254 * 358.94046 * 13 12 11 26 26 H 0.97004 * 120.00275 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00352 * 294.09185 * 10 9 7 28 28 H 1.08994 * 110.71711 * 271.97246 * 11 9 7 29 29 H 1.08999 * 110.71918 * 35.25314 * 11 9 7 30 30 H 1.09001 * 109.88138 * 97.22545 * 12 11 9 31 31 H 1.09001 * 109.87910 * 218.23402 * 12 11 9 32 32 H 1.08006 * 119.90994 * 180.02562 * 19 17 16 33 33 H 1.07998 * 119.82786 * 180.02562 * 20 19 17 34 34 H 1.08993 * 110.36909 * 265.30777 * 25 13 12 35 35 H 1.08997 * 110.40302 * 142.95324 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3975 2.6809 0.5914 6 1 3.4896 1.4731 0.8034 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0837 9 6 1.2556 -2.4964 -0.1187 10 8 0.5059 -2.5446 -1.3341 11 6 2.2224 -3.7054 -0.0133 12 6 1.3124 -4.8297 0.5248 13 7 0.1686 -4.1860 1.1875 14 6 -0.8641 -4.8268 1.7699 15 8 -1.7595 -4.1895 2.2899 16 6 -0.9082 -6.3023 1.7765 17 6 -1.5294 -6.9917 0.7297 18 9 -2.0918 -6.3086 -0.2913 19 6 -1.5663 -8.3733 0.7424 20 6 -0.9907 -9.0746 1.7860 21 6 -0.3736 -8.3995 2.8264 22 9 0.1865 -9.0931 3.8415 23 6 -0.3252 -7.0176 2.8258 24 17 0.4544 -6.1734 4.1270 25 6 0.3382 -2.7226 1.1089 26 1 -0.4851 0.8401 -0.0004 27 1 -0.2132 -1.8996 -1.3786 28 1 2.6205 -3.9674 -0.9935 29 1 3.0295 -3.4937 0.6881 30 1 0.9619 -5.4497 -0.3004 31 1 1.8623 -5.4412 1.2402 32 1 -2.0452 -8.9067 -0.0655 33 1 -1.0225 -10.1541 1.7900 34 1 0.8157 -2.3469 2.0138 35 1 -0.6253 -2.2361 0.9573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598742200.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:33 Heat of formation + Delta-G solvation = -164.949967 kcal Electronic energy + Delta-G solvation = -26553.100111 eV Core-core repulsion = 22212.470356 eV Total energy + Delta-G solvation = -4340.629755 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.25113 -50.16204 -41.45045 -39.85308 -38.81388 -37.84438 -36.13821 -34.24898 -32.97408 -31.72743 -31.24356 -29.65102 -27.39973 -25.55942 -24.22051 -23.85448 -21.56866 -21.05743 -19.28045 -19.08829 -18.78022 -18.71230 -17.85107 -17.30240 -17.09046 -16.66918 -16.61411 -16.50501 -16.23469 -15.93253 -15.59273 -14.99998 -14.89104 -14.73073 -14.36522 -14.06656 -13.95859 -13.84362 -13.54503 -13.33695 -12.91754 -12.84320 -12.61720 -12.57799 -12.38215 -12.36119 -12.26058 -12.14596 -11.35539 -11.24752 -10.68730 -10.42244 -10.30737 -9.86675 -9.65682 -8.26243 -6.42961 -0.58748 -0.47033 0.60081 1.21846 1.42119 1.43817 1.52848 1.76028 1.97238 2.37700 2.75967 2.80927 2.99209 3.13971 3.49772 3.62324 3.71185 3.87867 4.03344 4.13075 4.26064 4.43033 4.45984 4.54661 4.66976 4.67504 4.79383 4.96808 5.01125 5.16742 5.30975 5.36587 5.41026 5.73114 6.04561 6.40423 6.64424 6.84800 7.24072 7.32482 8.79250 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.003896 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.303530 B = 7185.138895 C = 7713.565280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.236 3.764 10 O -0.584 6.584 11 C -0.110 4.110 12 C 0.106 3.894 13 N -0.596 5.596 14 C 0.566 3.434 15 O -0.576 6.576 16 C -0.138 4.138 17 C 0.117 3.883 18 F -0.133 7.133 19 C -0.093 4.093 20 C -0.070 4.070 21 C 0.103 3.897 22 F -0.118 7.118 23 C -0.038 4.038 24 Cl -0.039 7.039 25 C 0.108 3.892 26 H 0.269 0.731 27 H 0.372 0.628 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.203 0.797 33 H 0.212 0.788 34 H 0.048 0.952 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 -21.545 2.269 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.195 3.805 10 O -0.392 6.392 11 C -0.147 4.147 12 C -0.016 4.016 13 N -0.326 5.326 14 C 0.353 3.647 15 O -0.457 6.457 16 C -0.143 4.143 17 C 0.097 3.903 18 F -0.111 7.111 19 C -0.111 4.111 20 C -0.088 4.088 21 C 0.083 3.917 22 F -0.096 7.096 23 C -0.067 4.067 24 Cl -0.010 7.010 25 C -0.014 4.014 26 H 0.078 0.922 27 H 0.221 0.779 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.220 0.780 33 H 0.228 0.772 34 H 0.066 0.934 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.317 -21.528 2.563 21.682 hybrid contribution -0.242 2.340 0.509 2.407 sum 0.075 -19.188 3.072 19.432 Atomic orbital electron populations 1.69861 1.07233 1.28442 1.49905 1.25809 0.95688 1.02829 0.92950 0.85478 0.78604 0.78534 0.78470 1.19895 1.21286 1.18973 1.21775 0.94338 0.91238 1.52100 0.91114 1.19825 0.87348 0.93215 0.80087 1.86110 1.49972 1.62176 1.40920 1.22625 0.97040 0.92898 1.02161 1.22180 0.86450 0.96181 0.96784 1.48771 1.21517 1.08888 1.53474 1.17886 0.81258 0.87098 0.78448 1.90777 1.38703 1.68459 1.47744 1.19559 1.04747 0.93006 0.96982 1.17898 0.96653 0.91338 0.84449 1.91580 1.82331 1.80605 1.56620 1.21525 0.99394 0.88982 1.01185 1.21621 0.93930 1.03767 0.89475 1.17344 0.99486 0.86034 0.88876 1.91586 1.82671 1.78018 1.57321 1.20778 1.01750 0.91884 0.92257 1.98430 1.78411 1.77699 1.46455 1.22998 1.00719 0.77315 1.00351 0.92165 0.77933 0.89160 0.89009 0.90879 0.89620 0.77985 0.77156 0.93356 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.31 10.76 21.45 0.23 -50.08 16 2 C 0.03 1.49 5.31 84.65 0.45 1.94 16 3 Si 0.96 41.88 29.54 68.60 2.03 43.91 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.56 -28.89 8.25 25.60 0.21 -28.68 16 8 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 9 C 0.24 11.40 0.86 -10.15 -0.01 11.39 16 10 O -0.58 -30.00 13.14 -148.98 -1.96 -31.96 16 11 C -0.11 -4.16 6.13 31.78 0.19 -3.96 16 12 C 0.11 3.64 6.47 86.73 0.56 4.20 16 13 N -0.60 -25.25 3.33 -815.17 -2.71 -27.96 16 14 C 0.57 23.90 5.98 86.72 0.52 24.42 16 15 O -0.58 -29.31 17.36 -3.97 -0.07 -29.38 16 16 C -0.14 -4.34 4.82 -20.04 -0.10 -4.44 16 17 C 0.12 2.97 7.29 22.66 0.17 3.13 16 18 F -0.13 -4.12 16.83 44.97 0.76 -3.36 16 19 C -0.09 -1.21 10.01 22.28 0.22 -0.99 16 20 C -0.07 -0.73 10.01 22.35 0.22 -0.50 16 21 C 0.10 1.92 7.26 22.35 0.16 2.08 16 22 F -0.12 -2.19 16.83 44.97 0.76 -1.43 16 23 C -0.04 -1.02 6.36 22.64 0.14 -0.87 16 24 Cl -0.04 -1.17 27.70 -2.72 -0.08 -1.24 16 25 C 0.11 5.41 5.42 86.84 0.47 5.88 16 26 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.37 20.08 7.59 -74.06 -0.56 19.52 16 28 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.09 3.24 8.03 -2.39 -0.02 3.22 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.21 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.05 2.51 8.03 -2.39 -0.02 2.49 16 35 H 0.05 2.86 7.36 -2.39 -0.02 2.84 16 Total: -1.00 -69.79 328.60 2.78 -67.01 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.60 Total: 20.90 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 3.22 Total: 13.59 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -2.48 Total: -78.04 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -2.03 Total: -61.34 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.51 Total: -4.79 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.24 kcal Total: -69.79 2.78 -67.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598742200.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.938 kcal (2) G-P(sol) polarization free energy of solvation -69.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds