Wall clock time and date at job start Tue Mar 31 2020 16:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 110.63787 * 300.42070 * 9 7 2 11 11 C 1.55153 * 110.72079 * 177.27948 * 9 7 2 12 12 C 1.54905 * 101.58432 * 206.13591 * 11 9 7 13 13 N 1.47419 * 104.83258 * 37.00633 * 12 11 9 14 14 C 1.34781 * 125.64850 * 155.91019 * 13 12 11 15 15 O 1.21580 * 119.99781 * 179.97438 * 14 13 12 16 16 C 1.47620 * 119.99902 * 359.97438 * 14 13 12 17 17 C 1.39888 * 120.15935 * 269.99347 * 16 14 13 18 18 F 1.35100 * 120.08072 * 359.96258 * 17 16 14 19 19 C 1.38225 * 119.83732 * 179.97438 * 17 16 14 20 20 C 1.38282 * 120.18237 * 0.02562 * 19 17 16 21 21 C 1.38530 * 120.33565 * 359.97438 * 20 19 17 22 22 F 1.35107 * 119.92045 * 180.02562 * 21 20 19 23 23 C 1.38275 * 120.15455 * 359.74475 * 21 20 19 24 24 Cl 1.73605 * 120.09193 * 180.28181 * 23 21 20 25 25 C 1.47319 * 108.73704 * 335.71934 * 13 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00083 * 59.29892 * 10 9 7 28 28 H 1.09004 * 111.00253 * 324.20924 * 11 9 7 29 29 H 1.08998 * 111.00319 * 88.01567 * 11 9 7 30 30 H 1.08994 * 110.37244 * 155.84858 * 12 11 9 31 31 H 1.09008 * 110.36329 * 278.17306 * 12 11 9 32 32 H 1.08003 * 119.90610 * 179.97438 * 19 17 16 33 33 H 1.08003 * 119.83047 * 180.02562 * 20 19 17 34 34 H 1.09004 * 110.06766 * 241.86643 * 25 13 12 35 35 H 1.08999 * 109.85130 * 120.60999 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4077 -2.5991 1.1440 11 6 2.2320 -3.6993 -0.0725 12 6 1.3499 -4.7854 -0.7371 13 7 0.5316 -4.0559 -1.7227 14 6 -0.0315 -4.5894 -2.8250 15 8 -0.6895 -3.8900 -3.5706 16 6 0.1509 -6.0229 -3.1269 17 6 1.2336 -6.4449 -3.9056 18 9 2.1161 -5.5412 -4.3847 19 6 1.3983 -7.7888 -4.1837 20 6 0.4958 -8.7156 -3.6950 21 6 -0.5791 -8.3058 -2.9231 22 9 -1.4554 -9.2185 -2.4494 23 6 -0.7539 -6.9655 -2.6315 24 17 -2.0974 -6.4545 -1.6580 25 6 0.4269 -2.6481 -1.3017 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2492 -1.8928 1.2125 28 1 3.0959 -3.4634 -0.6939 29 1 2.5437 -4.0054 0.9261 30 1 1.9731 -5.5273 -1.2362 31 1 0.7117 -5.2632 0.0064 32 1 2.2336 -8.1159 -4.7851 33 1 0.6301 -9.7643 -3.9154 34 1 -0.6150 -2.3914 -1.1102 35 1 0.8344 -1.9987 -2.0765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598742207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:36 Heat of formation + Delta-G solvation = -145.768035 kcal Electronic energy + Delta-G solvation = -26513.393540 eV Core-core repulsion = 22173.595576 eV Total energy + Delta-G solvation = -4339.797964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.30139 -49.21425 -40.04753 -38.60138 -37.18644 -36.76868 -34.37359 -32.23382 -31.85035 -30.45622 -29.96447 -27.92915 -25.70075 -24.19010 -23.22819 -22.51877 -19.94054 -19.53886 -18.07325 -17.81163 -17.66319 -17.21335 -16.58797 -16.18088 -15.72965 -15.48751 -15.25694 -14.83311 -14.80741 -14.67508 -14.29013 -13.81888 -13.25162 -13.13635 -13.00927 -12.90829 -12.82992 -12.28783 -11.96665 -11.70900 -11.63722 -11.48587 -11.23529 -11.09887 -10.85898 -10.71353 -10.53085 -10.22154 -9.80975 -9.39365 -9.36823 -8.94342 -8.71066 -8.36609 -8.04851 -6.32292 -4.40967 0.33509 0.41536 1.65252 2.70697 2.73622 3.18964 3.24885 3.27673 3.30452 3.71091 3.77215 4.13622 4.24690 4.45057 4.49762 4.83217 4.96274 5.24267 5.29929 5.32462 5.41376 5.52547 5.63530 5.75385 5.96480 6.04463 6.17029 6.42841 6.68274 6.77958 6.81556 7.19285 7.29916 7.69667 7.92782 8.00920 8.41402 8.62656 9.26692 9.36328 10.75611 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.003922 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.852275 B = 7137.769249 C = 7670.650935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.116 4.116 12 C 0.099 3.901 13 N -0.593 5.593 14 C 0.566 3.434 15 O -0.525 6.525 16 C -0.110 4.110 17 C 0.134 3.866 18 F -0.115 7.115 19 C -0.122 4.122 20 C -0.103 4.103 21 C 0.099 3.901 22 F -0.120 7.120 23 C -0.024 4.024 24 Cl -0.015 7.015 25 C 0.103 3.897 26 H 0.271 0.729 27 H 0.385 0.615 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.070 0.930 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 -17.573 -5.625 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.393 6.393 11 C -0.154 4.154 12 C -0.024 4.024 13 N -0.324 5.324 14 C 0.351 3.649 15 O -0.402 6.402 16 C -0.115 4.115 17 C 0.113 3.887 18 F -0.093 7.093 19 C -0.141 4.141 20 C -0.122 4.122 21 C 0.078 3.922 22 F -0.098 7.098 23 C -0.053 4.053 24 Cl 0.015 6.985 25 C -0.017 4.017 26 H 0.081 0.919 27 H 0.236 0.764 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.088 0.912 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.474 -17.547 -5.859 18.558 hybrid contribution -0.116 1.413 -0.120 1.423 sum 1.358 -16.134 -5.979 17.260 Atomic orbital electron populations 1.69640 1.06024 1.28051 1.49643 1.25073 0.95051 0.99812 0.93278 0.86387 0.79803 0.82330 0.78327 1.20385 1.20960 1.19651 1.21509 0.93733 0.90010 1.52424 0.91421 1.19475 0.86127 0.92129 0.81354 1.86096 1.51698 1.54877 1.46662 1.22748 0.97518 0.94779 1.00333 1.22388 0.93461 0.95454 0.91073 1.48802 1.48931 1.13084 1.21626 1.17232 0.80908 0.85109 0.81679 1.90828 1.40258 1.60720 1.48438 1.19925 0.95331 0.95638 1.00620 1.17466 0.87837 0.87037 0.96336 1.91609 1.65762 1.66467 1.85500 1.21036 1.01276 0.90036 1.01702 1.21038 0.92569 1.01638 0.97005 1.17179 0.91032 0.84477 0.99476 1.91575 1.66985 1.64885 1.86357 1.20728 0.93719 0.91596 0.99213 1.98454 1.41842 1.90727 1.67509 1.23222 1.02134 0.77083 0.99302 0.91887 0.76438 0.90326 0.90231 0.92308 0.91236 0.82365 0.82312 0.91178 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.50 10.96 55.43 0.61 -22.89 16 2 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -13.81 8.11 -34.44 -0.28 -14.09 16 8 H 0.07 1.70 7.77 -52.49 -0.41 1.30 16 9 C 0.25 5.91 0.85 -89.94 -0.08 5.83 16 10 O -0.58 -14.40 13.08 -35.23 -0.46 -14.86 16 11 C -0.12 -2.26 6.23 -24.59 -0.15 -2.41 16 12 C 0.10 1.75 6.67 -2.53 -0.02 1.73 16 13 N -0.59 -12.18 3.33 -171.48 -0.57 -12.75 16 14 C 0.57 11.45 5.98 -12.43 -0.07 11.37 16 15 O -0.52 -12.47 17.43 5.30 0.09 -12.38 16 16 C -0.11 -1.74 4.53 -104.89 -0.48 -2.21 16 17 C 0.13 1.76 7.29 -38.97 -0.28 1.47 16 18 F -0.12 -1.70 16.83 2.25 0.04 -1.66 16 19 C -0.12 -1.06 10.01 -39.57 -0.40 -1.45 16 20 C -0.10 -0.83 10.01 -39.46 -0.39 -1.23 16 21 C 0.10 1.10 7.26 -39.46 -0.29 0.82 16 22 F -0.12 -1.34 16.83 2.25 0.04 -1.30 16 23 C -0.02 -0.34 6.36 -39.01 -0.25 -0.59 16 24 Cl -0.01 -0.23 27.70 -51.86 -1.44 -1.66 16 25 C 0.10 2.47 5.39 -2.90 -0.02 2.45 16 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.38 9.77 7.24 45.56 0.33 10.10 16 28 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.06 0.87 7.69 -51.93 -0.40 0.47 16 31 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.07 1.82 8.00 -51.93 -0.42 1.41 16 35 H 0.07 1.84 7.81 -51.93 -0.41 1.43 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -29.41 328.24 -7.10 -36.51 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -2.54 Total: 7.42 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -2.79 Total: 3.43 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.04 Total: -35.65 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.37 Total: -27.24 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.08 Total: -2.96 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.44 Total: -1.66 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.41 -7.10 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598742207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.258 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds