Wall clock time and date at job start Tue Mar 31 2020 16:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 110.63787 * 300.42070 * 9 7 2 11 11 C 1.55153 * 110.72079 * 177.27948 * 9 7 2 12 12 C 1.54905 * 101.58432 * 206.13591 * 11 9 7 13 13 N 1.47419 * 104.83258 * 37.00633 * 12 11 9 14 14 C 1.34781 * 125.64850 * 155.91019 * 13 12 11 15 15 O 1.21580 * 119.99781 * 179.97438 * 14 13 12 16 16 C 1.47620 * 119.99902 * 359.97438 * 14 13 12 17 17 C 1.39888 * 120.15935 * 269.99347 * 16 14 13 18 18 F 1.35100 * 120.08072 * 359.96258 * 17 16 14 19 19 C 1.38225 * 119.83732 * 179.97438 * 17 16 14 20 20 C 1.38282 * 120.18237 * 0.02562 * 19 17 16 21 21 C 1.38530 * 120.33565 * 359.97438 * 20 19 17 22 22 F 1.35107 * 119.92045 * 180.02562 * 21 20 19 23 23 C 1.38275 * 120.15455 * 359.74475 * 21 20 19 24 24 Cl 1.73605 * 120.09193 * 180.28181 * 23 21 20 25 25 C 1.47319 * 108.73704 * 335.71934 * 13 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00083 * 59.29892 * 10 9 7 28 28 H 1.09004 * 111.00253 * 324.20924 * 11 9 7 29 29 H 1.08998 * 111.00319 * 88.01567 * 11 9 7 30 30 H 1.08994 * 110.37244 * 155.84858 * 12 11 9 31 31 H 1.09008 * 110.36329 * 278.17306 * 12 11 9 32 32 H 1.08003 * 119.90610 * 179.97438 * 19 17 16 33 33 H 1.08003 * 119.83047 * 180.02562 * 20 19 17 34 34 H 1.09004 * 110.06766 * 241.86643 * 25 13 12 35 35 H 1.08999 * 109.85130 * 120.60999 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4077 -2.5991 1.1440 11 6 2.2320 -3.6993 -0.0725 12 6 1.3499 -4.7854 -0.7371 13 7 0.5316 -4.0559 -1.7227 14 6 -0.0315 -4.5894 -2.8250 15 8 -0.6895 -3.8900 -3.5706 16 6 0.1509 -6.0229 -3.1269 17 6 1.2336 -6.4449 -3.9056 18 9 2.1161 -5.5412 -4.3847 19 6 1.3983 -7.7888 -4.1837 20 6 0.4958 -8.7156 -3.6950 21 6 -0.5791 -8.3058 -2.9231 22 9 -1.4554 -9.2185 -2.4494 23 6 -0.7539 -6.9655 -2.6315 24 17 -2.0974 -6.4545 -1.6580 25 6 0.4269 -2.6481 -1.3017 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2492 -1.8928 1.2125 28 1 3.0959 -3.4634 -0.6939 29 1 2.5437 -4.0054 0.9261 30 1 1.9731 -5.5273 -1.2362 31 1 0.7117 -5.2632 0.0064 32 1 2.2336 -8.1159 -4.7851 33 1 0.6301 -9.7643 -3.9154 34 1 -0.6150 -2.3914 -1.1102 35 1 0.8344 -1.9987 -2.0765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598742207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:35 Heat of formation + Delta-G solvation = -165.612826 kcal Electronic energy + Delta-G solvation = -26514.254075 eV Core-core repulsion = 22173.595576 eV Total energy + Delta-G solvation = -4340.658499 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.25075 -50.16187 -41.46644 -39.85953 -38.85028 -37.84322 -36.18731 -34.23037 -32.96792 -31.67749 -31.24956 -29.69509 -27.40549 -25.55115 -24.23320 -23.89926 -21.56706 -21.07335 -19.29036 -19.06706 -18.81660 -18.73577 -17.87052 -17.43035 -17.10586 -16.68072 -16.57459 -16.50094 -16.10273 -15.91941 -15.58696 -14.93722 -14.88395 -14.81628 -14.43136 -14.06115 -13.97479 -13.84912 -13.53868 -13.41415 -12.93041 -12.88783 -12.59786 -12.58661 -12.36796 -12.36245 -12.30664 -12.14821 -11.37048 -11.22708 -10.68003 -10.41592 -10.29992 -9.86711 -9.77347 -8.29226 -6.45222 -0.59216 -0.47034 0.61104 1.19306 1.40362 1.42647 1.52319 1.73726 1.96400 2.36303 2.75215 2.79832 2.97325 3.12273 3.49120 3.62061 3.71276 3.87158 4.02467 4.13749 4.27066 4.43293 4.45368 4.52181 4.61387 4.67818 4.79648 4.92777 5.03736 5.11228 5.29448 5.36762 5.43472 5.71162 6.00526 6.38084 6.61861 6.82046 7.25314 7.33203 8.77145 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.003922 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.852275 B = 7137.769249 C = 7670.650935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.070 0.930 9 C 0.236 3.764 10 O -0.586 6.586 11 C -0.109 4.109 12 C 0.106 3.894 13 N -0.598 5.598 14 C 0.565 3.435 15 O -0.576 6.576 16 C -0.138 4.138 17 C 0.120 3.880 18 F -0.130 7.130 19 C -0.091 4.091 20 C -0.069 4.069 21 C 0.102 3.898 22 F -0.119 7.119 23 C -0.040 4.040 24 Cl -0.043 7.043 25 C 0.121 3.879 26 H 0.271 0.729 27 H 0.377 0.623 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.206 0.794 33 H 0.212 0.788 34 H 0.035 0.965 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -20.915 -6.448 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.088 0.912 9 C 0.196 3.804 10 O -0.395 6.395 11 C -0.147 4.147 12 C -0.016 4.016 13 N -0.328 5.328 14 C 0.353 3.647 15 O -0.456 6.456 16 C -0.143 4.143 17 C 0.100 3.900 18 F -0.108 7.108 19 C -0.109 4.109 20 C -0.087 4.087 21 C 0.081 3.919 22 F -0.097 7.097 23 C -0.068 4.068 24 Cl -0.013 7.013 25 C -0.002 4.002 26 H 0.080 0.920 27 H 0.227 0.773 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.223 0.777 33 H 0.228 0.772 34 H 0.053 0.947 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.761 -20.932 -6.665 22.287 hybrid contribution -0.823 2.350 0.078 2.491 sum 2.938 -18.582 -6.587 19.933 Atomic orbital electron populations 1.69752 1.07179 1.28573 1.50143 1.25818 0.95773 1.02858 0.92984 0.85458 0.78890 0.78645 0.78089 1.20517 1.20737 1.18742 1.21849 0.94060 0.91203 1.52486 0.91196 1.19678 0.86587 0.93602 0.80573 1.86085 1.51663 1.54504 1.47231 1.22745 0.96973 0.93305 1.01677 1.22484 0.93209 0.95222 0.90688 1.48839 1.49568 1.11917 1.22519 1.17945 0.79294 0.87061 0.80436 1.90776 1.42163 1.62805 1.49892 1.19528 0.98143 0.92617 1.04047 1.17826 0.87074 0.88618 0.96496 1.91576 1.66087 1.67461 1.85719 1.21537 1.01891 0.87420 1.00038 1.21638 0.89720 1.03890 0.93490 1.17385 0.91820 0.83067 0.99580 1.91587 1.67256 1.64449 1.86432 1.20827 0.93085 0.92817 1.00109 1.98440 1.43307 1.91176 1.68427 1.22711 0.99716 0.79027 0.98748 0.91997 0.77322 0.89476 0.88670 0.88621 0.90841 0.77726 0.77153 0.94667 0.94352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.19 10.96 21.45 0.24 -49.95 16 2 C 0.03 1.39 5.27 84.66 0.45 1.84 16 3 Si 0.96 42.10 29.54 68.60 2.03 44.13 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.56 -29.20 8.11 25.60 0.21 -28.99 16 8 H 0.07 3.54 7.77 -2.91 -0.02 3.51 16 9 C 0.24 11.47 0.85 -10.35 -0.01 11.46 16 10 O -0.59 -29.84 13.08 -148.98 -1.95 -31.78 16 11 C -0.11 -4.17 6.23 31.98 0.20 -3.98 16 12 C 0.11 3.64 6.67 86.85 0.58 4.22 16 13 N -0.60 -25.35 3.33 -814.70 -2.72 -28.06 16 14 C 0.57 23.67 5.98 86.72 0.52 24.18 16 15 O -0.58 -29.08 17.43 -3.97 -0.07 -29.15 16 16 C -0.14 -4.27 4.53 -20.04 -0.09 -4.36 16 17 C 0.12 2.83 7.29 22.67 0.17 2.99 16 18 F -0.13 -3.62 16.83 44.97 0.76 -2.86 16 19 C -0.09 -1.05 10.01 22.28 0.22 -0.83 16 20 C -0.07 -0.68 10.01 22.35 0.22 -0.46 16 21 C 0.10 1.91 7.26 22.35 0.16 2.07 16 22 F -0.12 -2.29 16.83 44.97 0.76 -1.53 16 23 C -0.04 -1.08 6.36 22.64 0.14 -0.94 16 24 Cl -0.04 -1.35 27.70 -2.72 -0.08 -1.42 16 25 C 0.12 6.10 5.39 86.67 0.47 6.57 16 26 H 0.27 14.20 8.31 -92.70 -0.77 13.43 16 27 H 0.38 20.15 7.24 -74.06 -0.54 19.61 16 28 H 0.09 3.16 8.03 -2.38 -0.02 3.14 16 29 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.10 2.61 7.69 -2.39 -0.02 2.59 16 31 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.21 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.21 0.06 8.06 -2.91 -0.02 0.04 16 34 H 0.03 1.98 8.00 -2.39 -0.02 1.96 16 35 H 0.04 2.13 7.81 -2.39 -0.02 2.11 16 Total: -1.00 -70.16 328.24 2.84 -67.32 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.63 Total: 19.52 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 3.24 Total: 13.79 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.48 Total: -78.02 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: -2.02 Total: -60.93 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 1.51 Total: -4.39 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.42 kcal Total: -70.16 2.84 -67.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598742207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.292 kcal (2) G-P(sol) polarization free energy of solvation -70.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds