Wall clock time and date at job start Tue Mar 31 2020 15:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 116.99978 * 2 1 4 4 C 1.38731 * 120.05092 * 0.25456 * 3 2 1 5 5 C 1.38237 * 119.92997 * 180.29903 * 4 3 2 6 6 Cl 1.73603 * 119.98321 * 179.70418 * 5 4 3 7 7 C 1.38409 * 120.03323 * 359.67747 * 5 4 3 8 8 C 1.38225 * 120.09651 * 0.05046 * 7 5 4 9 9 C 1.38173 * 120.06918 * 359.97438 * 8 7 5 10 10 S 1.76192 * 120.01704 * 179.97438 * 9 8 7 11 11 O 1.42105 * 106.40282 * 1.46151 * 10 9 8 12 12 O 1.42101 * 106.40358 * 228.54005 * 10 9 8 13 13 N 1.65602 * 107.21917 * 114.99956 * 10 9 8 14 14 C 1.36935 * 120.00191 * 90.00275 * 13 10 9 15 15 H 1.08005 * 119.99843 * 232.26351 * 14 13 10 16 16 C 1.38814 * 119.99902 * 52.25812 * 14 13 10 17 17 N 1.31613 * 119.99961 * 20.80320 * 16 14 13 18 18 Si 1.86800 * 119.99645 * 200.79934 * 16 14 13 19 19 H 1.48498 * 109.47363 * 270.00070 * 18 16 14 20 20 H 1.48494 * 109.47514 * 30.00311 * 18 16 14 21 21 H 1.48505 * 109.46689 * 150.00161 * 18 16 14 22 22 C 1.46505 * 120.00010 * 269.99907 * 13 10 9 23 23 C 1.52994 * 117.49722 * 183.42655 * 22 13 10 24 24 C 1.53003 * 117.49664 * 114.76708 * 22 13 10 25 25 H 1.08993 * 109.47178 * 59.99725 * 1 2 3 26 26 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46707 * 299.99808 * 1 2 3 28 28 H 1.07991 * 120.03179 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.95149 * 180.02562 * 7 5 4 30 30 H 1.07994 * 119.96569 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99967 * 174.95423 * 17 16 14 32 32 H 1.08997 * 115.54918 * 329.10417 * 22 13 10 33 33 H 1.08995 * 117.50178 * 0.02562 * 23 22 13 34 34 H 1.09007 * 117.49403 * 145.02296 * 23 22 13 35 35 H 1.08999 * 117.50007 * 214.98135 * 24 22 13 36 36 H 1.08997 * 117.49884 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3750 0.0053 5 6 1.9215 3.6054 -0.0009 6 17 0.9786 5.0630 -0.0020 7 6 3.3038 3.6757 -0.0058 8 6 4.0569 2.5166 -0.0054 9 6 3.4313 1.2846 0.0003 10 16 4.3925 -0.1920 0.0001 11 8 5.7537 0.2152 0.0282 12 8 3.8508 -1.0233 -1.0171 13 7 4.1057 -0.9639 1.4369 14 6 3.0843 -1.8707 1.5350 15 1 2.3513 -1.7753 2.3225 16 6 2.9909 -2.9123 0.6222 17 7 4.0516 -3.2845 -0.0623 18 14 1.3598 -3.7859 0.3657 19 1 1.2579 -4.9306 1.3061 20 1 0.2453 -2.8375 0.6178 21 1 1.2795 -4.2840 -1.0310 22 6 4.9447 -0.6766 2.6030 23 6 4.6811 -1.4801 3.8781 24 6 4.2776 -0.0052 3.8052 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2129 2.3200 0.0091 29 1 3.7948 4.6377 -0.0102 30 1 5.1353 2.5740 -0.0096 31 1 4.0056 -4.0584 -0.6454 32 1 5.9772 -0.4049 2.3838 33 1 3.8837 -2.2226 3.8492 34 1 5.5403 -1.7366 4.4979 35 1 4.8713 0.7078 4.3770 36 1 3.2146 0.2231 3.7282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604521664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:05 Heat of formation + Delta-G solvation = -43.379179 kcal Electronic energy + Delta-G solvation = -25560.677545 eV Core-core repulsion = 21779.159881 eV Total energy + Delta-G solvation = -3781.517664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.80277 -37.42649 -37.10649 -36.23005 -35.46071 -34.03328 -33.21727 -30.76224 -30.55288 -29.91546 -27.00793 -24.87901 -22.76168 -22.06810 -21.57140 -20.51625 -18.80019 -18.34701 -17.04395 -16.21678 -15.99118 -15.78002 -15.48162 -14.97766 -14.93576 -14.28201 -14.02670 -13.95845 -13.66700 -13.27599 -13.13251 -12.46276 -12.31699 -11.83013 -11.74893 -11.61464 -11.39139 -11.26271 -10.96621 -10.94635 -10.81590 -10.62565 -10.59082 -10.34381 -10.27831 -10.21062 -9.91924 -9.57283 -9.30134 -8.83891 -8.62555 -8.06330 -7.45938 -6.46012 -4.09585 1.08280 1.59250 1.98752 2.11674 3.18460 3.20466 3.29084 3.60238 3.69349 4.14429 4.60262 4.73273 4.91859 5.01927 5.14734 5.16306 5.37545 5.40610 5.44731 5.75134 5.77887 5.79797 5.81432 5.83438 5.86446 6.09900 6.21404 6.31687 6.34644 6.43193 6.61733 6.77612 6.88929 7.00057 7.43363 7.56801 7.61115 8.25212 8.96303 9.38262 10.60517 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.006098 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.460579 B = 4590.343547 C = 5343.600845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.265 6.265 3 C 0.237 3.763 4 C -0.233 4.233 5 C 0.036 3.964 6 Cl -0.078 7.078 7 C -0.181 4.181 8 C 0.012 3.988 9 C -0.692 4.692 10 S 2.569 3.431 11 O -1.018 7.018 12 O -0.931 6.931 13 N -0.784 5.784 14 C -0.260 4.260 15 H 0.077 0.923 16 C 0.068 3.932 17 N -0.783 5.783 18 Si 0.921 3.079 19 H -0.280 1.280 20 H -0.262 1.262 21 H -0.280 1.280 22 C 0.098 3.902 23 C -0.161 4.161 24 C -0.215 4.215 25 H 0.052 0.948 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.278 0.722 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 8.033 3.430 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.175 6.175 3 C 0.188 3.812 4 C -0.253 4.253 5 C 0.009 3.991 6 Cl -0.050 7.050 7 C -0.200 4.200 8 C -0.007 4.007 9 C -0.768 4.768 10 S 2.666 3.334 11 O -1.007 7.007 12 O -0.920 6.920 13 N -0.606 5.606 14 C -0.408 4.408 15 H 0.094 0.906 16 C -0.150 4.150 17 N -0.419 5.419 18 Si 0.747 3.253 19 H -0.206 1.206 20 H -0.187 1.187 21 H -0.205 1.205 22 C -0.011 4.011 23 C -0.200 4.200 24 C -0.255 4.255 25 H 0.070 0.930 26 H 0.124 0.876 27 H 0.073 0.927 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.165 0.835 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.358 7.915 2.381 9.850 hybrid contribution -1.670 0.617 -0.051 1.781 sum -7.028 8.532 2.330 11.297 Atomic orbital electron populations 1.23234 0.79042 1.04690 1.00672 1.86554 1.20721 1.24246 1.85990 1.18273 0.90717 0.84418 0.87808 1.21097 1.00469 0.90961 1.12769 1.20728 0.91812 0.86561 1.00033 1.98349 1.73137 1.36737 1.96738 1.20984 0.91466 0.99577 1.08007 1.20766 1.00315 0.89660 0.89942 1.31901 1.05317 1.23449 1.16094 1.10447 0.73924 0.72036 0.76954 1.93279 1.35663 1.83860 1.87909 1.93445 1.78953 1.62533 1.57023 1.52318 1.39486 1.43876 1.24906 1.18772 1.04467 1.02199 1.15320 0.90583 1.25646 0.97710 0.95955 0.95680 1.69786 1.28878 1.21561 1.21687 0.86104 0.82451 0.78788 0.77913 1.20649 1.18711 1.20500 1.21397 0.94050 1.02955 0.82692 1.23054 1.03273 0.94211 0.99510 1.23354 1.01481 0.95753 1.04881 0.92979 0.87582 0.92685 0.84524 0.84958 0.83476 0.91111 0.86555 0.87382 0.89824 0.89851 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.27 -5.37 7.83 -29.51 -0.23 -5.60 16 3 C 0.24 4.70 6.63 -39.22 -0.26 4.44 16 4 C -0.23 -3.88 8.82 -39.40 -0.35 -4.22 16 5 C 0.04 0.56 6.32 -39.52 -0.25 0.31 16 6 Cl -0.08 -1.03 28.95 -51.86 -1.50 -2.53 16 7 C -0.18 -2.89 9.83 -39.52 -0.39 -3.27 16 8 C 0.01 0.23 9.54 -39.61 -0.38 -0.15 16 9 C -0.69 -14.78 5.92 -39.42 -0.23 -15.01 16 10 S 2.57 64.40 5.03 -107.50 -0.54 63.86 16 11 O -1.02 -26.74 15.80 -57.17 -0.90 -27.64 16 12 O -0.93 -26.17 13.51 -62.59 -0.85 -27.01 16 13 N -0.78 -18.63 3.00 -53.42 -0.16 -18.79 16 14 C -0.26 -6.22 6.27 -15.06 -0.09 -6.31 16 15 H 0.08 1.72 7.66 -52.48 -0.40 1.32 16 16 C 0.07 1.70 4.15 -17.43 -0.07 1.63 16 17 N -0.78 -21.32 11.58 55.49 0.64 -20.67 16 18 Si 0.92 19.35 29.61 -169.99 -5.03 14.32 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.26 -4.98 5.62 56.52 0.32 -4.66 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.10 2.04 6.32 -67.93 -0.43 1.61 16 23 C -0.16 -2.87 9.83 -26.70 -0.26 -3.13 16 24 C -0.21 -3.70 10.36 -26.69 -0.28 -3.98 16 25 H 0.05 0.66 7.67 -51.93 -0.40 0.27 16 26 H 0.11 1.53 6.66 -51.93 -0.35 1.18 16 27 H 0.05 0.69 7.65 -51.93 -0.40 0.30 16 28 H 0.14 1.91 6.30 -52.49 -0.33 1.58 16 29 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.15 2.59 7.33 -52.49 -0.38 2.20 16 31 H 0.28 7.16 8.32 -40.82 -0.34 6.82 16 32 H 0.12 2.41 7.46 -51.93 -0.39 2.02 16 33 H 0.11 2.02 6.91 -51.93 -0.36 1.66 16 34 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -30.55 327.41 -9.56 -40.10 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.92 Total: 5.86 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: -2.00 Total: -26.83 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.48 Total: -39.46 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: -1.98 Total: -60.25 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Atomic # 16 Polarization: 64.40 SS G_CDS: -0.54 Total: 63.86 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.55 -9.56 -40.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604521664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.278 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds