Wall clock time and date at job start Tue Mar 31 2020 15:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 116.99978 * 2 1 4 4 C 1.38731 * 120.05092 * 0.25456 * 3 2 1 5 5 C 1.38237 * 119.92997 * 180.29903 * 4 3 2 6 6 Cl 1.73603 * 119.98321 * 179.70418 * 5 4 3 7 7 C 1.38409 * 120.03323 * 359.67747 * 5 4 3 8 8 C 1.38225 * 120.09651 * 0.05046 * 7 5 4 9 9 C 1.38173 * 120.06918 * 359.97438 * 8 7 5 10 10 S 1.76192 * 120.01704 * 179.97438 * 9 8 7 11 11 O 1.42105 * 106.40282 * 1.46151 * 10 9 8 12 12 O 1.42101 * 106.40358 * 228.54005 * 10 9 8 13 13 N 1.65602 * 107.21917 * 114.99956 * 10 9 8 14 14 C 1.36935 * 120.00191 * 90.00275 * 13 10 9 15 15 H 1.08005 * 119.99843 * 232.26351 * 14 13 10 16 16 C 1.38814 * 119.99902 * 52.25812 * 14 13 10 17 17 N 1.31613 * 119.99961 * 20.80320 * 16 14 13 18 18 Si 1.86800 * 119.99645 * 200.79934 * 16 14 13 19 19 H 1.48498 * 109.47363 * 270.00070 * 18 16 14 20 20 H 1.48494 * 109.47514 * 30.00311 * 18 16 14 21 21 H 1.48505 * 109.46689 * 150.00161 * 18 16 14 22 22 C 1.46505 * 120.00010 * 269.99907 * 13 10 9 23 23 C 1.52994 * 117.49722 * 183.42655 * 22 13 10 24 24 C 1.53003 * 117.49664 * 114.76708 * 22 13 10 25 25 H 1.08993 * 109.47178 * 59.99725 * 1 2 3 26 26 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46707 * 299.99808 * 1 2 3 28 28 H 1.07991 * 120.03179 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.95149 * 180.02562 * 7 5 4 30 30 H 1.07994 * 119.96569 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99967 * 174.95423 * 17 16 14 32 32 H 1.08997 * 115.54918 * 329.10417 * 22 13 10 33 33 H 1.08995 * 117.50178 * 0.02562 * 23 22 13 34 34 H 1.09007 * 117.49403 * 145.02296 * 23 22 13 35 35 H 1.08999 * 117.50007 * 214.98135 * 24 22 13 36 36 H 1.08997 * 117.49884 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3750 0.0053 5 6 1.9215 3.6054 -0.0009 6 17 0.9786 5.0630 -0.0020 7 6 3.3038 3.6757 -0.0058 8 6 4.0569 2.5166 -0.0054 9 6 3.4313 1.2846 0.0003 10 16 4.3925 -0.1920 0.0001 11 8 5.7537 0.2152 0.0282 12 8 3.8508 -1.0233 -1.0171 13 7 4.1057 -0.9639 1.4369 14 6 3.0843 -1.8707 1.5350 15 1 2.3513 -1.7753 2.3225 16 6 2.9909 -2.9123 0.6222 17 7 4.0516 -3.2845 -0.0623 18 14 1.3598 -3.7859 0.3657 19 1 1.2579 -4.9306 1.3061 20 1 0.2453 -2.8375 0.6178 21 1 1.2795 -4.2840 -1.0310 22 6 4.9447 -0.6766 2.6030 23 6 4.6811 -1.4801 3.8781 24 6 4.2776 -0.0052 3.8052 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2129 2.3200 0.0091 29 1 3.7948 4.6377 -0.0102 30 1 5.1353 2.5740 -0.0096 31 1 4.0056 -4.0584 -0.6454 32 1 5.9772 -0.4049 2.3838 33 1 3.8837 -2.2226 3.8492 34 1 5.5403 -1.7366 4.4979 35 1 4.8713 0.7078 4.3770 36 1 3.2146 0.2231 3.7282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604521664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:04 Heat of formation + Delta-G solvation = -62.712276 kcal Electronic energy + Delta-G solvation = -25561.515891 eV Core-core repulsion = 21779.159881 eV Total energy + Delta-G solvation = -3782.356010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.16583 -38.76901 -38.66852 -37.57514 -37.29529 -36.02464 -34.99024 -32.36661 -32.09693 -31.25909 -28.20836 -26.70650 -24.18479 -23.40633 -22.97877 -22.15369 -20.61668 -19.80090 -18.66106 -17.78618 -17.60110 -17.35372 -17.01607 -16.58855 -16.28129 -15.95147 -15.48291 -15.45154 -15.15576 -14.85828 -14.41982 -14.04230 -13.78824 -13.44943 -13.09409 -13.02871 -12.93344 -12.79711 -12.59957 -12.46942 -12.32057 -12.15981 -12.09548 -12.07173 -11.87420 -11.85371 -11.53587 -11.26248 -10.89262 -10.45321 -10.16423 -9.42963 -9.20058 -8.30563 -5.98142 -0.32275 0.20339 0.24895 0.86028 1.49461 1.55274 1.63644 2.25702 2.31999 2.44787 2.89449 3.15779 3.24843 3.51422 3.66162 3.88317 3.94573 4.19062 4.25329 4.31529 4.37173 4.43133 4.43788 4.50694 4.55643 4.69404 4.81795 4.92774 4.97213 5.00411 5.11849 5.30563 5.53502 5.55691 5.57567 5.89746 6.29793 6.38344 7.15342 7.57036 8.76302 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.006098 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.460579 B = 4590.343547 C = 5343.600845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.299 6.299 3 C 0.225 3.775 4 C -0.226 4.226 5 C 0.040 3.960 6 Cl -0.045 7.045 7 C -0.172 4.172 8 C 0.002 3.998 9 C -0.722 4.722 10 S 2.574 3.426 11 O -1.046 7.046 12 O -0.974 6.974 13 N -0.796 5.796 14 C -0.255 4.255 15 H 0.088 0.912 16 C 0.025 3.975 17 N -0.836 5.836 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.229 1.229 21 H -0.298 1.298 22 C 0.054 3.946 23 C -0.149 4.149 24 C -0.185 4.185 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.273 0.727 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 10.444 5.033 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.210 6.210 3 C 0.176 3.824 4 C -0.246 4.246 5 C 0.012 3.988 6 Cl -0.016 7.016 7 C -0.191 4.191 8 C -0.018 4.018 9 C -0.804 4.804 10 S 2.677 3.323 11 O -1.036 7.036 12 O -0.963 6.963 13 N -0.618 5.618 14 C -0.402 4.402 15 H 0.106 0.894 16 C -0.188 4.188 17 N -0.474 5.474 18 Si 0.787 3.213 19 H -0.192 1.192 20 H -0.152 1.152 21 H -0.225 1.225 22 C -0.055 4.055 23 C -0.188 4.188 24 C -0.224 4.224 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.099 0.901 28 H 0.184 0.816 29 H 0.183 0.817 30 H 0.164 0.836 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.821 10.291 4.031 13.540 hybrid contribution -0.948 0.106 -0.535 1.094 sum -8.769 10.398 3.496 14.044 Atomic orbital electron populations 1.23563 0.76692 1.05650 1.02955 1.86497 1.23394 1.24993 1.86136 1.18381 0.90362 0.85422 0.88269 1.21336 1.01735 0.90071 1.11429 1.20900 0.92149 0.87642 0.98061 1.98368 1.72225 1.34578 1.96413 1.21262 0.91718 0.99837 1.06293 1.20869 1.00662 0.89855 0.90390 1.31343 1.06209 1.22638 1.20173 1.09545 0.73406 0.72595 0.76757 1.93221 1.37540 1.84541 1.88304 1.93385 1.79506 1.64690 1.58721 1.52188 1.40086 1.44365 1.25210 1.18982 1.04508 1.01589 1.15133 0.89429 1.26520 1.00250 0.96769 0.95299 1.69906 1.31190 1.22674 1.23584 0.85442 0.80075 0.78866 0.76916 1.19171 1.15181 1.22471 1.21602 0.93883 1.06927 0.83066 1.23124 1.03802 0.94468 0.97450 1.23365 1.01383 0.95952 1.01745 0.90889 0.87393 0.90141 0.81608 0.81709 0.83573 0.91744 0.87678 0.88430 0.87176 0.86904 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.30 -11.85 7.83 -82.74 -0.65 -12.50 16 3 C 0.22 8.67 6.63 22.51 0.15 8.82 16 4 C -0.23 -6.83 8.82 22.39 0.20 -6.63 16 5 C 0.04 1.11 6.32 22.31 0.14 1.25 16 6 Cl -0.05 -0.99 28.95 -2.72 -0.08 -1.06 16 7 C -0.17 -5.01 9.83 22.31 0.22 -4.79 16 8 C 0.00 0.06 9.54 22.25 0.21 0.27 16 9 C -0.72 -31.03 5.92 22.37 0.13 -30.90 16 10 S 2.57 134.31 5.03 -56.49 -0.28 134.03 16 11 O -1.05 -57.80 15.80 -128.00 -2.02 -59.83 16 12 O -0.97 -57.57 13.51 -122.82 -1.66 -59.22 16 13 N -0.80 -38.77 3.00 -322.93 -0.97 -39.74 16 14 C -0.26 -12.38 6.27 84.03 0.53 -11.85 16 15 H 0.09 3.92 7.66 -2.91 -0.02 3.90 16 16 C 0.02 1.25 4.15 84.86 0.35 1.61 16 17 N -0.84 -47.82 11.58 21.65 0.25 -47.57 16 18 Si 0.96 39.59 29.61 68.60 2.03 41.62 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.23 -8.02 5.62 99.48 0.56 -7.46 16 21 H -0.30 -13.05 7.11 99.48 0.71 -12.35 16 22 C 0.05 2.25 6.32 44.99 0.28 2.53 16 23 C -0.15 -5.14 9.83 30.62 0.30 -4.84 16 24 C -0.18 -6.04 10.36 30.62 0.32 -5.72 16 25 H 0.07 1.65 7.67 -2.39 -0.02 1.63 16 26 H 0.11 2.84 6.66 -2.39 -0.02 2.83 16 27 H 0.08 1.74 7.65 -2.39 -0.02 1.72 16 28 H 0.17 3.91 6.30 -2.92 -0.02 3.89 16 29 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.15 5.21 7.33 -2.91 -0.02 5.19 16 31 H 0.27 14.96 8.32 -92.71 -0.77 14.19 16 32 H 0.11 4.53 7.46 -2.39 -0.02 4.51 16 33 H 0.10 3.57 6.91 -2.39 -0.02 3.56 16 34 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 35 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -70.09 327.41 1.54 -68.55 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.97 Total: 24.73 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 3.95 Total: -49.00 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -0.72 Total: -87.31 kcal Atomic # 8 Polarization: -127.22 SS G_CDS: -4.33 Total: -131.55 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Atomic # 16 Polarization: 134.31 SS G_CDS: -0.28 Total: 134.03 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.06 kcal Total: -70.09 1.54 -68.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604521664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.838 kcal (2) G-P(sol) polarization free energy of solvation -70.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds