Wall clock time and date at job start Tue Mar 31 2020 15:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42103 * 108.57587 * 2 1 4 4 O 1.42098 * 108.57777 * 228.97175 * 2 1 3 5 5 C 1.81404 * 101.92008 * 114.48549 * 2 1 3 6 6 C 1.50697 * 109.46916 * 180.02562 * 5 2 1 7 7 O 1.21288 * 120.00128 * 354.35579 * 6 5 2 8 8 N 1.34783 * 119.99733 * 174.35719 * 6 5 2 9 9 C 1.46495 * 119.99899 * 184.44935 * 8 6 5 10 10 C 1.50706 * 109.47266 * 270.00371 * 9 8 6 11 11 H 1.08003 * 119.99539 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99953 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00019 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99626 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47324 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46900 * 119.99804 * 14 12 10 17 17 H 1.48504 * 109.47066 * 239.99783 * 14 12 10 18 18 C 1.39922 * 119.99866 * 4.45378 * 8 6 5 19 19 C 1.38905 * 120.06267 * 246.74842 * 18 8 6 20 20 C 1.38095 * 119.95827 * 180.02562 * 19 18 8 21 21 C 1.38283 * 120.08066 * 359.97438 * 20 19 18 22 22 C 1.38376 * 120.13112 * 0.04686 * 21 20 19 23 23 Cl 1.73595 * 119.97961 * 179.97438 * 22 21 20 24 24 C 1.38250 * 120.04411 * 359.95337 * 22 21 20 25 25 H 1.09000 * 109.47436 * 305.51420 * 1 2 3 26 26 H 1.09003 * 109.47120 * 65.51878 * 1 2 3 27 27 H 1.09004 * 109.47063 * 185.51488 * 1 2 3 28 28 H 1.08998 * 109.46820 * 59.99814 * 5 2 1 29 29 H 1.09002 * 109.46509 * 300.00295 * 5 2 1 30 30 H 1.09004 * 109.47300 * 30.00044 * 9 8 6 31 31 H 1.08999 * 109.47007 * 149.99975 * 9 8 6 32 32 H 0.97000 * 119.99451 * 180.02562 * 13 12 10 33 33 H 1.08006 * 120.01634 * 0.02562 * 19 18 8 34 34 H 1.07997 * 119.95931 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.93372 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.04726 * 180.30036 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6826 -0.8171 1.7957 7 8 4.4212 -0.5143 0.8826 8 7 4.1979 -1.2265 2.9719 9 6 5.6479 -1.2131 3.1806 10 6 6.2293 -2.5361 2.7531 11 1 5.5832 -3.3097 2.3651 12 6 7.5858 -2.7592 2.8583 13 7 8.3724 -1.8173 3.3312 14 14 8.3063 -4.3994 2.3290 15 1 7.2184 -5.2824 1.8370 16 1 9.2945 -4.1785 1.2427 17 1 8.9788 -5.0415 3.4869 18 6 3.3481 -1.6645 3.9935 19 6 3.2358 -0.9309 5.1677 20 6 2.3968 -1.3654 6.1748 21 6 1.6678 -2.5296 6.0155 22 6 1.7772 -3.2634 4.8475 23 17 0.8607 -4.7247 4.6520 24 6 2.6156 -2.8333 3.8358 25 1 -0.3634 0.5970 0.8365 26 1 -0.3633 0.4259 -0.9353 27 1 -0.3633 -1.0229 0.0988 28 1 1.7609 -1.7369 1.6665 29 1 1.7609 -0.1170 2.4042 30 1 6.0927 -0.4127 2.5893 31 1 5.8614 -1.0465 4.2364 32 1 9.3268 -1.9742 3.4047 33 1 3.8045 -0.0212 5.2929 34 1 2.3099 -0.7953 7.0879 35 1 1.0120 -2.8671 6.8045 36 1 2.6974 -3.4034 2.9222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609522197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:20 Heat of formation + Delta-G solvation = -101.099881 kcal Electronic energy + Delta-G solvation = -24154.463665 eV Core-core repulsion = 20370.443044 eV Total energy + Delta-G solvation = -3784.020621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62784 -39.83494 -38.01866 -37.61273 -37.01956 -36.56926 -34.89111 -32.26133 -31.60317 -30.93749 -30.22592 -28.79709 -25.14261 -24.16826 -23.52139 -20.99130 -19.84844 -19.02200 -18.76921 -18.09639 -17.47689 -17.26455 -16.98855 -16.85513 -16.64613 -16.15432 -15.88098 -15.65418 -14.85334 -14.61804 -14.56592 -14.36285 -13.96615 -13.90802 -13.74231 -13.52968 -13.12641 -13.08913 -13.03549 -12.84451 -12.71665 -12.65648 -12.46462 -12.30870 -12.14041 -11.89120 -11.82712 -11.69666 -11.34361 -10.71114 -10.33735 -9.83035 -9.42656 -8.30476 -6.44064 -1.06246 0.07453 0.18812 1.06933 1.31296 1.34271 1.39409 1.46590 1.79526 1.89933 2.33351 2.56206 2.79623 3.00930 3.05286 3.32340 3.81683 3.89617 4.08887 4.12711 4.14285 4.20287 4.29412 4.37853 4.44561 4.73155 4.89511 4.96374 5.02908 5.15199 5.28435 5.35576 5.43939 5.62977 5.76172 5.93081 6.36322 6.62041 6.97583 7.26119 8.77605 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.007706 B = 0.005981 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3632.832861 B = 4680.751640 C = 6859.594335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.615 4.615 2 S 2.430 3.570 3 O -0.980 6.980 4 O -0.982 6.982 5 C -0.646 4.646 6 C 0.524 3.476 7 O -0.574 6.574 8 N -0.552 5.552 9 C 0.261 3.739 10 C -0.545 4.545 11 H 0.051 0.949 12 C 0.013 3.987 13 N -0.923 5.923 14 Si 0.963 3.037 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.266 1.266 18 C 0.139 3.861 19 C -0.126 4.126 20 C -0.077 4.077 21 C -0.104 4.104 22 C -0.024 4.024 23 Cl -0.063 7.063 24 C -0.128 4.128 25 H 0.167 0.833 26 H 0.150 0.850 27 H 0.163 0.837 28 H 0.187 0.813 29 H 0.197 0.803 30 H 0.009 0.991 31 H 0.035 0.965 32 H 0.269 0.731 33 H 0.131 0.869 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.214 -0.060 7.059 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.770 4.770 2 S 2.614 3.386 3 O -0.977 6.977 4 O -0.979 6.979 5 C -0.773 4.773 6 C 0.312 3.688 7 O -0.454 6.454 8 N -0.279 5.279 9 C 0.141 3.859 10 C -0.584 4.584 11 H 0.070 0.930 12 C -0.187 4.187 13 N -0.563 5.563 14 Si 0.787 3.213 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.190 1.190 18 C 0.048 3.952 19 C -0.146 4.146 20 C -0.095 4.095 21 C -0.123 4.123 22 C -0.051 4.051 23 Cl -0.034 7.034 24 C -0.148 4.148 25 H 0.185 0.815 26 H 0.168 0.832 27 H 0.182 0.818 28 H 0.204 0.796 29 H 0.214 0.786 30 H 0.027 0.973 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.192 0.808 35 H 0.185 0.815 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.044 0.307 5.965 23.806 hybrid contribution 0.854 -1.121 -0.030 1.410 sum -22.190 -0.814 5.935 22.985 Atomic orbital electron populations 1.30037 1.17348 1.14993 1.14603 1.07466 0.81198 0.74131 0.75808 1.93512 1.82008 1.36138 1.86086 1.93520 1.81932 1.67790 1.54632 1.30884 0.99020 1.18761 1.28642 1.20077 0.89693 0.76910 0.82094 1.90824 1.62879 1.51181 1.40497 1.45665 1.08032 1.61644 1.12510 1.19007 0.73841 0.96566 0.96451 1.21622 0.93340 1.00000 1.43391 0.93039 1.25773 0.97137 1.00940 0.94825 1.70027 1.05232 1.34789 1.46234 0.85431 0.78340 0.79115 0.78370 1.19395 1.20560 1.19038 1.17772 0.92988 0.94189 0.90222 1.21596 0.99615 1.00264 0.93086 1.21346 0.93661 0.95677 0.98818 1.21434 1.00417 0.94454 0.95989 1.20767 0.97428 0.90610 0.96298 1.98373 1.72366 1.35133 1.97571 1.21145 0.98091 0.95196 1.00364 0.81453 0.83208 0.81830 0.79565 0.78606 0.97321 0.94667 0.92187 0.85076 0.80824 0.81547 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -5.12 10.62 113.37 1.20 -3.92 16 2 S 2.43 63.94 4.62 -56.49 -0.26 63.68 16 3 O -0.98 -34.85 18.05 -127.07 -2.29 -37.14 16 4 O -0.98 -36.47 17.83 -124.46 -2.22 -38.69 16 5 C -0.65 -16.15 4.95 71.23 0.35 -15.79 16 6 C 0.52 22.21 7.55 87.65 0.66 22.87 16 7 O -0.57 -31.06 15.26 0.20 0.00 -31.05 16 8 N -0.55 -23.66 2.51 -635.30 -1.59 -25.26 16 9 C 0.26 14.12 5.07 85.64 0.43 14.55 16 10 C -0.55 -31.97 9.39 25.60 0.24 -31.73 16 11 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 12 C 0.01 0.75 5.46 84.65 0.46 1.22 16 13 N -0.92 -55.98 13.29 21.45 0.28 -55.70 16 14 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 C 0.14 4.51 4.42 38.15 0.17 4.68 16 19 C -0.13 -3.23 9.64 22.40 0.22 -3.01 16 20 C -0.08 -1.31 10.04 22.25 0.22 -1.08 16 21 C -0.10 -1.72 9.83 22.31 0.22 -1.50 16 22 C -0.02 -0.52 6.32 22.31 0.14 -0.38 16 23 Cl -0.06 -1.25 28.95 -2.72 -0.08 -1.33 16 24 C -0.13 -3.60 8.24 22.41 0.18 -3.41 16 25 H 0.17 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.16 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.19 3.34 7.00 -2.39 -0.02 3.32 16 29 H 0.20 3.01 8.01 -2.39 -0.02 2.99 16 30 H 0.01 0.54 7.49 -2.38 -0.02 0.52 16 31 H 0.04 1.90 7.83 -2.39 -0.02 1.88 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 34 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.12 3.70 7.90 -2.91 -0.02 3.68 16 Total: -1.00 -93.90 345.84 1.48 -92.42 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.10 Total: 2.57 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 4.51 Total: -17.52 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -1.31 Total: -80.95 kcal Atomic # 8 Polarization: -102.37 SS G_CDS: -4.51 Total: -106.88 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 63.94 SS G_CDS: -0.26 Total: 63.68 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -93.90 1.48 -92.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609522197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.676 kcal (2) G-P(sol) polarization free energy of solvation -93.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds