Wall clock time and date at job start Tue Mar 31 2020 16:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86802 * 119.99913 * 2 1 4 4 H 1.48499 * 109.47071 * 270.00270 * 3 2 1 5 5 H 1.48502 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48497 * 109.46762 * 150.00034 * 3 2 1 7 7 C 1.38942 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00252 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00200 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99742 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00640 * 179.97438 * 10 9 7 13 13 O 1.45195 * 109.47820 * 179.97438 * 12 10 9 14 14 C 1.34770 * 117.00481 * 179.97438 * 13 12 10 15 15 O 1.21519 * 119.99681 * 359.97438 * 14 13 12 16 16 C 1.47338 * 119.99976 * 179.97438 * 14 13 12 17 17 C 1.39895 * 120.06475 * 179.97438 * 16 14 13 18 18 C 1.36584 * 119.92995 * 180.02562 * 17 16 14 19 19 C 1.39321 * 120.06783 * 0.02852 * 18 17 16 20 20 S 1.76207 * 119.93072 * 179.97438 * 19 18 17 21 21 C 1.81399 * 102.99967 * 179.97438 * 20 19 18 22 22 F 1.39905 * 109.47243 * 300.00158 * 21 20 19 23 23 F 1.39898 * 109.47339 * 59.99959 * 21 20 19 24 24 C 1.39322 * 120.14270 * 0.24590 * 19 18 17 25 25 C 1.36593 * 120.06324 * 359.45042 * 24 19 18 26 26 H 0.97001 * 119.99889 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00519 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.46953 * 59.99249 * 12 10 9 29 29 H 1.09008 * 109.46795 * 300.00181 * 12 10 9 30 30 H 1.08004 * 120.03917 * 0.02562 * 17 16 14 31 31 H 1.08002 * 119.96761 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.47190 * 179.97438 * 21 20 19 33 33 H 1.07998 * 119.97232 * 179.70378 * 24 19 18 34 34 H 1.08003 * 120.03670 * 180.24751 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 8 2.1873 -5.9666 -0.0027 14 6 1.6723 -7.2120 -0.0027 15 8 0.4676 -7.3712 -0.0018 16 6 2.5698 -8.3804 -0.0038 17 6 2.0366 -9.6738 -0.0032 18 6 2.8713 -10.7549 -0.0037 19 6 4.2522 -10.5707 -0.0041 20 16 5.3256 -11.9681 -0.0040 21 6 6.9759 -11.2150 -0.0054 22 9 7.1257 -10.4220 -1.1482 23 9 7.1271 -10.4209 1.1364 24 6 4.7864 -9.2840 0.0012 25 6 3.9570 -8.1987 -0.0046 26 1 -0.4850 0.8401 0.0004 27 1 0.3534 -2.3907 -0.0016 28 1 0.6174 -4.9204 -0.8924 29 1 0.6168 -4.9209 0.8876 30 1 0.9662 -9.8173 -0.0025 31 1 2.4603 -11.7537 -0.0037 32 1 7.7331 -11.9991 -0.0049 33 1 5.8573 -9.1444 0.0057 34 1 4.3715 -7.2014 -0.0046 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:26 Heat of formation + Delta-G solvation = -179.833250 kcal Electronic energy + Delta-G solvation = -24303.598890 eV Core-core repulsion = 19964.367453 eV Total energy + Delta-G solvation = -4339.231436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.83948 -47.82825 -40.57247 -39.08276 -38.04742 -36.10379 -34.01104 -31.90733 -31.63852 -31.37021 -28.42011 -27.58231 -25.15864 -24.20686 -23.07555 -21.06333 -19.60581 -19.26217 -18.55607 -18.08023 -18.02051 -18.01620 -17.08540 -16.68686 -16.33090 -15.70574 -15.19688 -14.90127 -14.72947 -14.62877 -14.22687 -14.17206 -14.14254 -14.01485 -13.87010 -13.37247 -13.36631 -12.90556 -12.32371 -12.07876 -11.89955 -11.62691 -11.49670 -11.13994 -10.99419 -10.53352 -10.45865 -10.44587 -10.42816 -10.29921 -9.61272 -9.49853 -8.53753 -8.29004 -8.09078 -6.50598 -3.92703 0.14852 0.21169 1.02715 1.20072 2.36416 2.63343 3.12943 3.16495 3.23245 3.29393 3.43648 3.72609 3.72932 3.80209 4.10350 4.36039 4.46597 4.55437 4.91489 4.93577 5.08703 5.14409 5.22343 5.47469 5.58666 5.68288 5.76169 5.83937 6.00334 6.06836 6.36058 6.54051 7.47261 7.77739 7.94345 8.47550 9.06333 9.38419 9.88146 10.66606 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.002225 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.323945 B =12581.748217 C =13744.276865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.320 6.320 14 C 0.505 3.495 15 O -0.509 6.509 16 C -0.115 4.115 17 C -0.038 4.038 18 C -0.105 4.105 19 C -0.066 4.066 20 S -0.089 6.089 21 C 0.271 3.729 22 F -0.177 7.177 23 F -0.177 7.177 24 C -0.135 4.135 25 C -0.035 4.035 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 -25.507 0.000 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.235 6.235 14 C 0.349 3.651 15 O -0.399 6.399 16 C -0.118 4.118 17 C -0.058 4.058 18 C -0.128 4.128 19 C -0.179 4.179 20 S 0.149 5.851 21 C 0.108 3.892 22 F -0.159 7.159 23 F -0.159 7.159 24 C -0.158 4.158 25 C -0.055 4.055 26 H 0.084 0.916 27 H 0.229 0.771 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.153 0.847 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.776 -26.525 0.007 27.939 hybrid contribution -0.140 2.309 -0.013 2.313 sum 8.637 -24.216 -0.005 25.710 Atomic orbital electron populations 1.69618 1.05999 1.28499 1.49636 1.25317 0.95694 0.99881 0.96877 0.85795 0.79232 0.80403 0.78504 1.20251 1.20802 1.19270 1.19723 0.93479 0.81735 1.48191 0.87604 1.41701 1.09390 1.04074 1.63778 1.19295 0.88330 0.84043 0.86017 1.90559 1.13393 1.86783 1.55289 1.22790 0.90801 0.84342 1.03682 1.86594 1.40049 1.13847 1.82970 1.21041 0.87085 0.83794 0.73149 1.90834 1.15914 1.86991 1.46169 1.19286 0.93113 0.91419 1.07989 1.20958 1.01057 0.89946 0.93823 1.20400 0.90219 0.99737 1.02414 1.21886 0.96973 0.95481 1.03579 1.86305 0.96790 1.09870 1.92134 1.24339 1.00608 0.90520 0.73711 1.93147 1.96318 1.76550 1.49852 1.93143 1.96301 1.76486 1.49940 1.21160 1.01027 0.90914 1.02742 1.21331 0.91830 1.00336 0.92001 0.91614 0.77131 0.89360 0.89352 0.83470 0.84247 0.82401 0.84683 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -13.95 5.29 -10.97 -0.06 -14.01 16 10 C 0.44 10.55 7.86 -10.99 -0.09 10.46 16 11 O -0.58 -15.91 16.08 -14.11 -0.23 -16.14 16 12 C 0.06 1.17 5.95 36.00 0.21 1.39 16 13 O -0.32 -6.01 8.99 -47.36 -0.43 -6.43 16 14 C 0.50 8.28 7.88 34.43 0.27 8.56 16 15 O -0.51 -8.97 16.13 -19.28 -0.31 -9.28 16 16 C -0.11 -1.54 5.88 -104.96 -0.62 -2.16 16 17 C -0.04 -0.41 9.54 -39.56 -0.38 -0.79 16 18 C -0.10 -0.97 9.73 -39.78 -0.39 -1.36 16 19 C -0.07 -0.66 6.13 -38.78 -0.24 -0.90 16 20 S -0.09 -0.65 22.16 -107.50 -2.38 -3.03 16 21 C 0.27 1.65 5.37 101.05 0.54 2.19 16 22 F -0.18 -1.46 15.65 2.25 0.04 -1.42 16 23 F -0.18 -1.46 15.61 2.25 0.04 -1.42 16 24 C -0.14 -1.51 8.62 -39.77 -0.34 -1.86 16 25 C -0.04 -0.45 9.56 -39.56 -0.38 -0.83 16 26 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 30 H 0.15 1.45 7.64 -52.48 -0.40 1.05 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.16 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.14 1.43 4.53 -52.49 -0.24 1.19 16 34 H 0.15 2.05 7.60 -52.48 -0.40 1.65 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -32.82 331.16 -6.84 -39.66 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -2.56 Total: 7.95 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.64 Total: 6.79 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.67 Total: -37.34 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.96 Total: -31.85 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.07 Total: -2.85 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.38 Total: -3.03 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.82 -6.84 -39.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.171 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds