Wall clock time and date at job start Tue Mar 31 2020 16:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 S 1.65601 * 120.59741 * 124.62063 * 12 11 10 14 14 O 1.42108 * 106.39821 * 23.56743 * 13 12 11 15 15 O 1.42099 * 106.40122 * 156.48219 * 13 12 11 16 16 C 1.76192 * 107.21921 * 270.02589 * 13 12 11 17 17 C 1.38606 * 120.42589 * 114.71946 * 16 13 12 18 18 C 1.38674 * 118.44031 * 179.77966 * 17 16 13 19 19 C 1.38192 * 119.18717 * 0.49463 * 18 17 16 20 20 N 1.31882 * 120.77796 * 359.74801 * 19 18 17 21 21 C 1.31970 * 121.71131 * 359.97438 * 20 19 18 22 22 Cl 1.73605 * 119.63625 * 179.97438 * 21 20 19 23 23 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 24 24 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 25 25 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 27 27 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 28 28 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 29 29 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 30 30 H 1.08001 * 120.78093 * 359.97438 * 17 16 13 31 31 H 1.07995 * 120.40589 * 180.23993 * 18 17 16 32 32 H 1.07997 * 119.60837 * 179.72300 * 19 18 17 33 33 H 1.09001 * 109.60759 * 295.47709 * 23 12 11 34 34 H 1.08998 * 109.74755 * 175.05508 * 23 12 11 35 35 H 1.08993 * 109.60915 * 354.94812 * 24 9 7 36 36 H 1.09004 * 109.60752 * 115.28520 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 16 0.2001 -5.9803 2.3229 14 8 1.1330 -7.0318 2.1144 15 8 -0.4240 -5.7319 3.5751 16 6 -1.0997 -6.2306 1.1600 17 6 -1.0714 -7.3158 0.2983 18 6 -2.1181 -7.4756 -0.5972 19 6 -3.1429 -6.5486 -0.6084 20 7 -3.1355 -5.5244 0.2225 21 6 -2.1592 -5.3434 1.0918 22 17 -2.2037 -3.9757 2.1602 23 6 0.5346 -3.2873 2.4477 24 6 0.2345 -2.3367 1.2822 25 1 -0.4851 0.8400 -0.0004 26 1 1.0135 -4.0708 -0.8204 27 1 2.7054 -3.5085 -0.8010 28 1 3.0128 -4.2756 1.4848 29 1 2.2521 -5.6157 0.5910 30 1 -0.2549 -8.0222 0.3258 31 1 -2.1302 -8.3120 -1.2803 32 1 -3.9592 -6.6639 -1.3060 33 1 1.3249 -2.8662 3.0691 34 1 -0.3654 -3.4280 3.0461 35 1 0.0947 -1.3247 1.6622 36 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738366786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:48 Heat of formation + Delta-G solvation = -15.907968 kcal Electronic energy + Delta-G solvation = -25325.059703 eV Core-core repulsion = 21577.026032 eV Total energy + Delta-G solvation = -3748.033671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35093 -39.27995 -38.60078 -37.92190 -37.08986 -35.61433 -34.00119 -32.93957 -32.41887 -31.86772 -28.23500 -25.45719 -25.07166 -24.86348 -24.52450 -21.73876 -20.22984 -19.66872 -18.95844 -18.26586 -18.03743 -17.80832 -16.94128 -16.65402 -15.97485 -15.79128 -15.53978 -15.42039 -15.41345 -15.22619 -14.74220 -14.60815 -13.98946 -13.76206 -13.66242 -13.36934 -13.09784 -13.02303 -12.87913 -12.74170 -12.53204 -12.49358 -12.25189 -12.09327 -11.96431 -11.64535 -11.58468 -11.28263 -10.90762 -10.59988 -10.37597 -10.17419 -8.61458 -7.84427 -5.31648 -0.90422 -0.62977 -0.13364 0.43479 1.47617 1.50947 1.60125 1.70344 2.27105 2.51111 2.54044 3.01569 3.30036 3.32292 3.57345 3.63169 3.75001 3.81542 3.97342 4.18682 4.27978 4.42692 4.55335 4.59056 4.65652 4.72891 4.77751 4.87480 5.06205 5.22830 5.28891 5.29564 5.59794 5.66619 5.75247 6.38215 6.39977 7.15377 7.85394 8.38349 9.20418 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.005109 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.871935 B = 5479.159921 C = 5929.864955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.048 4.048 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.259 4.259 8 H 0.072 0.928 9 N -0.607 5.607 10 C 0.128 3.872 11 C 0.108 3.892 12 N -0.983 5.983 13 S 2.703 3.297 14 O -0.960 6.960 15 O -0.967 6.967 16 C -0.732 4.732 17 C 0.024 3.976 18 C -0.170 4.170 19 C 0.159 3.841 20 N -0.518 5.518 21 C 0.244 3.756 22 Cl -0.014 7.014 23 C 0.099 3.901 24 C 0.165 3.835 25 H 0.249 0.751 26 H 0.015 0.985 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.188 0.812 31 H 0.204 0.796 32 H 0.213 0.787 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 -17.290 -0.892 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.389 4.389 8 H 0.090 0.910 9 N -0.330 5.330 10 C 0.001 3.999 11 C -0.018 4.018 12 N -0.822 5.822 13 S 2.791 3.209 14 O -0.950 6.950 15 O -0.958 6.958 16 C -0.821 4.821 17 C -0.002 4.002 18 C -0.190 4.190 19 C 0.004 3.996 20 N -0.230 5.230 21 C 0.078 3.922 22 Cl 0.015 6.985 23 C -0.027 4.027 24 C 0.037 3.963 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.205 0.795 31 H 0.221 0.779 32 H 0.229 0.771 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.501 -16.979 -0.145 17.336 hybrid contribution 0.137 1.243 -0.460 1.333 sum -3.364 -15.736 -0.605 16.103 Atomic orbital electron populations 1.70175 1.06609 1.25705 1.55279 1.25763 0.95935 1.01369 1.01315 0.85268 0.78788 0.80187 0.76520 1.18967 1.22299 1.21980 1.19556 0.93066 0.85716 1.40544 0.91036 1.44189 1.36626 1.02449 1.49743 1.21523 0.98317 0.86303 0.93752 1.22188 0.87666 1.01309 0.90637 1.57361 1.43448 1.21343 1.60016 1.01694 0.73016 0.72471 0.73670 1.93531 1.60760 1.54165 1.86550 1.93574 1.77500 1.85078 1.39622 1.31773 1.19119 1.06957 1.24222 1.21924 0.98520 0.91783 0.87990 1.22891 0.93586 1.02349 1.00192 1.23931 0.98094 0.85796 0.91782 1.67214 1.26000 1.23941 1.05869 1.21361 0.90836 0.88617 0.91405 1.98483 1.97128 1.41964 1.60916 1.22365 1.00053 0.83276 0.97018 1.21047 0.88815 0.97509 0.88896 0.94194 0.96675 0.90448 0.89985 0.87189 0.79515 0.77911 0.77052 0.91021 0.89457 0.91767 0.96586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 11.20 21.65 0.24 -53.82 16 2 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 3 Si 0.96 44.02 29.59 68.60 2.03 46.05 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.26 -13.62 9.57 84.03 0.80 -12.82 16 8 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -29.15 2.96 -697.36 -2.06 -31.22 16 10 C 0.13 4.89 6.70 86.56 0.58 5.47 16 11 C 0.11 3.39 6.57 86.56 0.57 3.96 16 12 N -0.98 -33.47 3.26 -511.44 -1.67 -35.14 16 13 S 2.70 85.16 5.19 -56.49 -0.29 84.87 16 14 O -0.96 -29.46 15.74 -128.00 -2.01 -31.47 16 15 O -0.97 -34.82 15.37 -128.00 -1.97 -36.79 16 16 C -0.73 -21.01 5.93 22.39 0.13 -20.88 16 17 C 0.02 0.48 9.66 22.46 0.22 0.70 16 18 C -0.17 -2.45 10.11 22.36 0.23 -2.22 16 19 C 0.16 2.98 11.18 84.67 0.95 3.93 16 20 N -0.52 -15.31 10.34 -186.69 -1.93 -17.24 16 21 C 0.24 7.99 7.26 84.70 0.61 8.61 16 22 Cl -0.01 -0.50 20.74 -2.72 -0.06 -0.56 16 23 C 0.10 3.85 5.55 86.41 0.48 4.33 16 24 C 0.16 7.72 5.07 86.41 0.44 8.16 16 25 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 26 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 2.76 7.93 -2.39 -0.02 2.74 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.11 2.76 7.09 -2.39 -0.02 2.74 16 30 H 0.19 2.72 7.44 -2.91 -0.02 2.70 16 31 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.21 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.09 3.27 4.24 -2.39 -0.01 3.26 16 35 H 0.06 3.44 6.00 -2.39 -0.01 3.43 16 36 H 0.02 0.80 6.42 -2.38 -0.02 0.78 16 Total: -1.00 -72.50 314.07 -1.17 -73.68 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.12 Total: 4.62 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.43 Total: -2.98 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -5.42 Total: -137.42 kcal Atomic # 8 Polarization: -64.28 SS G_CDS: -3.98 Total: -68.26 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 85.16 SS G_CDS: -0.29 Total: 84.87 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.06 Total: -0.56 kcal Total: -72.50 -1.17 -73.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738366786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.767 kcal (2) G-P(sol) polarization free energy of solvation -72.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds