Wall clock time and date at job start Tue Mar 31 2020 17:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35532 * 125.67441 * 2 1 4 4 C 1.35455 * 108.86772 * 179.74942 * 3 2 1 5 5 S 1.76204 * 126.06844 * 180.28297 * 4 3 2 6 6 O 1.42095 * 106.40208 * 22.25022 * 5 4 3 7 7 O 1.42104 * 106.40266 * 155.16957 * 5 4 3 8 8 N 1.65599 * 107.21754 * 268.71093 * 5 4 3 9 9 C 1.36935 * 119.99932 * 94.45196 * 8 5 4 10 10 H 1.07997 * 120.00177 * 325.88069 * 9 8 5 11 11 C 1.38814 * 120.00195 * 145.88249 * 9 8 5 12 12 N 1.31613 * 120.00500 * 155.26681 * 11 9 8 13 13 Si 1.86806 * 119.99729 * 335.26258 * 11 9 8 14 14 H 1.48490 * 109.47155 * 95.65645 * 13 11 9 15 15 H 1.48500 * 109.47011 * 215.65715 * 13 11 9 16 16 H 1.48499 * 109.47155 * 335.64997 * 13 11 9 17 17 C 1.46503 * 120.00090 * 274.44513 * 8 5 4 18 18 C 1.50700 * 109.46899 * 95.00330 * 17 8 5 19 19 O 1.20834 * 119.99907 * 359.97438 * 18 17 8 20 20 O 1.34223 * 120.00106 * 180.02562 * 18 17 8 21 21 C 1.39834 * 107.86460 * 0.40824 * 4 3 2 22 22 C 1.37648 * 125.67685 * 180.02562 * 2 1 3 23 23 C 1.46673 * 126.23646 * 359.97438 * 22 2 1 24 24 N 1.34771 * 120.00562 * 174.59667 * 23 22 2 25 25 O 1.21698 * 119.99929 * 354.59532 * 23 22 2 26 26 H 1.09002 * 109.46897 * 267.71704 * 1 2 3 27 27 H 1.09003 * 109.47203 * 27.70761 * 1 2 3 28 28 H 1.09001 * 109.47302 * 147.71596 * 1 2 3 29 29 H 1.07996 * 125.56968 * 0.02562 * 3 2 1 30 30 H 0.97001 * 120.00782 * 180.02562 * 12 11 9 31 31 H 1.08996 * 109.47057 * 215.00664 * 17 8 5 32 32 H 1.09002 * 109.47245 * 335.00693 * 17 8 5 33 33 H 0.96702 * 117.00094 * 180.02562 * 20 18 17 34 34 H 1.08003 * 126.45568 * 179.86535 * 21 4 3 35 35 H 0.97006 * 119.99734 * 5.76374 * 24 23 22 36 36 H 0.97003 * 120.00663 * 185.76044 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 0.0056 5 16 4.9570 1.7728 0.0149 6 8 4.5128 3.0198 0.5316 7 8 6.0208 1.0273 0.5911 8 7 5.3771 2.0437 -1.5638 9 6 4.9072 3.1518 -2.2169 10 1 3.9215 3.5326 -1.9937 11 6 5.6976 3.7854 -3.1659 12 7 5.1370 4.5015 -4.1174 13 14 7.5570 3.6219 -3.0926 14 1 7.9937 2.5276 -3.9963 15 1 8.1834 4.8981 -3.5218 16 1 7.9720 3.3103 -1.7012 17 6 6.2518 1.0981 -2.2617 18 6 5.4121 0.1108 -3.0306 19 8 4.2067 0.1888 -2.9985 20 8 6.0032 -0.8558 -3.7503 21 6 3.5779 -0.6888 -0.0002 22 6 2.2678 -1.1181 -0.0005 23 6 1.8124 -2.5124 -0.0006 24 7 2.7076 -3.5138 -0.1110 25 8 0.6262 -2.7651 0.0991 26 1 -0.3633 -0.0409 1.0269 27 1 -0.3634 0.9098 -0.4778 28 1 -0.3634 -0.8688 -0.5489 29 1 1.9082 2.1236 0.0004 30 1 5.6893 4.9440 -4.7808 31 1 6.8971 1.6414 -2.9519 32 1 6.8645 0.5652 -1.5345 33 1 5.4231 -1.4653 -4.2269 34 1 4.4583 -1.3144 0.0000 35 1 3.6577 -3.3177 -0.1062 36 1 2.4021 -4.4305 -0.1952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739036102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:04 Heat of formation + Delta-G solvation = -123.126059 kcal Electronic energy + Delta-G solvation = -27707.003735 eV Core-core repulsion = 23513.611574 eV Total energy + Delta-G solvation = -4193.392161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.35443 -39.58587 -38.84852 -36.37809 -36.09052 -35.10857 -34.94355 -34.15419 -32.68845 -31.87906 -29.33508 -27.89391 -26.69201 -24.21710 -23.26996 -21.54770 -21.20621 -19.80388 -18.67134 -18.23979 -17.53127 -17.19396 -16.91331 -16.80801 -15.97028 -15.88523 -15.64088 -15.41058 -15.04606 -14.82826 -14.35099 -14.27960 -14.15647 -13.40991 -12.94139 -12.82069 -12.65382 -12.58191 -12.45995 -12.34800 -12.13415 -11.36854 -11.26624 -11.11148 -10.97593 -10.92219 -10.65636 -10.39761 -10.21596 -10.02960 -9.99853 -9.91131 -9.20393 -8.88002 -8.31193 -8.22368 -6.40082 -4.00187 1.28656 1.45691 2.31618 2.66066 2.83945 3.04022 3.27038 3.28975 3.29529 3.44119 3.55714 4.09236 4.20241 4.56414 4.68543 4.81769 4.96724 4.98487 5.18280 5.22099 5.44356 5.51797 5.55254 5.59048 5.76719 5.85287 6.05163 6.48066 6.65678 6.68486 6.84182 7.00407 7.13828 7.18455 7.65370 8.07270 8.24552 8.51610 8.99691 9.13708 10.70955 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.005280 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.975587 B = 5301.433131 C = 5762.750318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.404 5.404 3 C 0.155 3.845 4 C -0.729 4.729 5 S 2.704 3.296 6 O -0.954 6.954 7 O -0.990 6.990 8 N -0.847 5.847 9 C -0.312 4.312 10 H 0.110 0.890 11 C 0.069 3.931 12 N -0.859 5.859 13 Si 0.852 3.148 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.255 1.255 17 C 0.112 3.888 18 C 0.449 3.551 19 O -0.482 6.482 20 O -0.529 6.529 21 C -0.043 4.043 22 C -0.071 4.071 23 C 0.601 3.399 24 N -0.844 5.844 25 O -0.557 6.557 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.188 0.812 30 H 0.273 0.727 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.396 0.604 34 H 0.150 0.850 35 H 0.405 0.595 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 -12.645 4.503 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.076 5.076 3 C 0.012 3.988 4 C -0.820 4.820 5 S 2.796 3.204 6 O -0.944 6.944 7 O -0.980 6.980 8 N -0.678 5.678 9 C -0.442 4.442 10 H 0.128 0.872 11 C -0.139 4.139 12 N -0.495 5.495 13 Si 0.679 3.321 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.179 1.179 17 C -0.017 4.017 18 C 0.287 3.713 19 O -0.366 6.366 20 O -0.341 6.341 21 C -0.069 4.069 22 C -0.182 4.182 23 C 0.389 3.611 24 N -0.407 5.407 25 O -0.437 6.437 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.205 0.795 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.254 0.746 34 H 0.167 0.833 35 H 0.234 0.766 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.161 -11.954 5.438 13.508 hybrid contribution 0.342 -1.065 -1.126 1.587 sum -2.819 -13.020 4.313 14.002 Atomic orbital electron populations 1.22310 0.75800 1.05304 1.04104 1.44047 1.07003 1.05041 1.51479 1.21838 0.88622 0.91994 0.96344 1.31211 1.15769 1.09045 1.26020 1.01699 0.73318 0.72683 0.72694 1.93503 1.82715 1.40750 1.77424 1.93462 1.53247 1.74570 1.76670 1.52899 1.60773 1.27578 1.26528 1.18579 1.01623 1.02416 1.21586 0.87207 1.25237 0.98063 0.95558 0.95069 1.69876 1.36141 1.31931 1.11559 0.87327 0.87179 0.77686 0.79868 1.19893 1.20920 1.17921 1.21374 0.92949 0.89718 0.97642 1.24840 0.89027 0.79826 0.77586 1.90709 1.15657 1.70458 1.59787 1.84601 1.45966 1.42359 1.61165 1.20792 0.94682 0.92819 0.98593 1.19888 0.90410 0.87460 1.20467 1.16902 0.85314 0.83938 0.74992 1.43427 1.10340 1.09477 1.77500 1.90812 1.16480 1.85087 1.51294 0.90315 0.89313 0.88222 0.79479 0.91650 0.87583 0.86457 0.74604 0.83274 0.76552 0.76128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.46 59.85 0.63 1.40 16 2 N -0.40 -6.17 3.16 -120.24 -0.38 -6.55 16 3 C 0.15 2.58 11.11 -16.91 -0.19 2.39 16 4 C -0.73 -13.25 5.66 -39.98 -0.23 -13.48 16 5 S 2.70 56.62 5.79 -107.50 -0.62 56.00 16 6 O -0.95 -22.18 16.97 -57.17 -0.97 -23.15 16 7 O -0.99 -20.74 16.53 -57.17 -0.95 -21.69 16 8 N -0.85 -19.10 2.05 -61.09 -0.13 -19.22 16 9 C -0.31 -8.05 9.18 -15.06 -0.14 -8.19 16 10 H 0.11 3.02 8.03 -52.49 -0.42 2.59 16 11 C 0.07 1.81 5.30 -17.43 -0.09 1.72 16 12 N -0.86 -23.82 13.97 55.49 0.78 -23.05 16 13 Si 0.85 19.38 25.05 -169.99 -4.26 15.13 16 14 H -0.27 -5.75 6.66 56.52 0.38 -5.38 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 16 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 17 C 0.11 2.24 5.26 -5.19 -0.03 2.22 16 18 C 0.45 8.38 8.37 36.01 0.30 8.68 16 19 O -0.48 -10.10 16.41 -18.76 -0.31 -10.41 16 20 O -0.53 -7.73 13.42 -39.24 -0.53 -8.25 16 21 C -0.04 -0.68 9.99 -39.12 -0.39 -1.07 16 22 C -0.07 -1.10 6.88 -81.98 -0.56 -1.66 16 23 C 0.60 8.37 8.05 -12.86 -0.10 8.27 16 24 N -0.84 -7.89 8.86 30.26 0.27 -7.62 16 25 O -0.56 -9.02 15.63 5.19 0.08 -8.94 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 0.85 8.13 -51.93 -0.42 0.42 16 28 H 0.10 1.25 6.58 -51.93 -0.34 0.91 16 29 H 0.19 2.74 8.06 -52.49 -0.42 2.32 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.11 2.21 2.81 -51.93 -0.15 2.06 16 32 H 0.12 2.00 6.97 -51.93 -0.36 1.64 16 33 H 0.40 3.98 9.10 45.56 0.41 4.40 16 34 H 0.15 1.95 7.45 -52.48 -0.39 1.56 16 35 H 0.41 2.99 7.73 -40.82 -0.32 2.67 16 36 H 0.41 2.92 8.93 -40.82 -0.36 2.56 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -35.73 329.23 -5.21 -40.94 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -2.36 Total: 11.57 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.80 Total: 0.28 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.54 Total: -56.44 kcal Atomic # 8 Polarization: -69.78 SS G_CDS: -2.67 Total: -72.44 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.26 Total: 15.13 kcal Atomic # 16 Polarization: 56.62 SS G_CDS: -0.62 Total: 56.00 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.73 -5.21 -40.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739036102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.190 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds