Wall clock time and date at job start Tue Mar 31 2020 16:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48500 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47252 * 299.99787 * 3 2 1 6 6 H 1.48504 * 109.47509 * 59.99739 * 3 2 1 7 7 C 1.38949 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00318 * 201.66053 * 7 2 1 9 9 N 1.37097 * 119.99807 * 21.65918 * 7 2 1 10 10 C 1.46501 * 120.00094 * 16.50168 * 9 7 2 11 11 C 1.50700 * 109.47543 * 264.07001 * 10 9 7 12 12 O 1.20822 * 119.99648 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99876 * 179.97438 * 11 10 9 14 14 C 1.34774 * 120.00115 * 196.50661 * 9 7 2 15 15 O 1.21292 * 120.00140 * 359.97438 * 14 9 7 16 16 C 1.50696 * 120.00286 * 179.97438 * 14 9 7 17 17 S 1.81403 * 109.47476 * 179.97438 * 16 14 9 18 18 C 1.76193 * 103.00306 * 180.02562 * 17 16 14 19 19 C 1.38964 * 120.04378 * 0.02562 * 18 17 16 20 20 C 1.38115 * 119.98711 * 179.97438 * 19 18 17 21 21 C 1.38430 * 120.08193 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.95687 * 180.28599 * 21 20 19 23 23 C 1.38677 * 120.08685 * 0.02562 * 21 20 19 24 24 F 1.35102 * 119.99261 * 180.02562 * 23 21 20 25 25 C 1.38309 * 120.01299 * 0.02562 * 23 21 20 26 26 H 0.97004 * 120.00131 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47098 * 24.07091 * 10 9 7 28 28 H 1.09007 * 109.46764 * 144.06659 * 10 9 7 29 29 H 0.96701 * 116.99712 * 179.97438 * 13 11 10 30 30 H 1.09002 * 109.47186 * 60.00067 * 16 14 9 31 31 H 1.09001 * 109.47392 * 299.99880 * 16 14 9 32 32 H 1.07997 * 120.00768 * 359.97355 * 19 18 17 33 33 H 1.08001 * 119.95670 * 180.02562 * 20 19 18 34 34 H 1.07994 * 120.03848 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0316 -1.2363 0.3457 9 7 1.3959 -2.3489 -0.4372 10 6 0.1673 -2.2650 -1.2308 11 6 -1.0272 -2.4244 -0.3259 12 8 -0.8685 -2.5906 0.8603 13 8 -2.2673 -2.3808 -0.8376 14 6 1.9236 -3.5523 -0.1373 15 8 2.9409 -3.6218 0.5194 16 6 1.2496 -4.8115 -0.6179 17 16 2.1943 -6.2550 -0.0571 18 6 1.2706 -7.6089 -0.7037 19 6 0.1175 -7.3746 -1.4430 20 6 -0.6054 -8.4368 -1.9497 21 6 -0.1825 -9.7352 -1.7225 22 9 -0.8884 -10.7721 -2.2242 23 6 0.9677 -9.9727 -0.9851 24 9 1.3790 -11.2407 -0.7650 25 6 1.6939 -8.9119 -0.4751 26 1 -0.4850 0.8401 -0.0004 27 1 0.1206 -1.2954 -1.7267 28 1 0.1640 -3.0568 -1.9799 29 1 -3.0019 -2.4883 -0.2180 30 1 1.2058 -4.8072 -1.7071 31 1 0.2383 -4.8593 -0.2138 32 1 -0.2133 -6.3621 -1.6213 33 1 -1.5012 -8.2541 -2.5246 34 1 2.5895 -9.0964 0.0996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:42 Heat of formation + Delta-G solvation = -169.093358 kcal Electronic energy + Delta-G solvation = -25348.283857 eV Core-core repulsion = 21009.518138 eV Total energy + Delta-G solvation = -4338.765720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.60963 -48.68213 -39.66118 -38.89747 -38.32222 -35.46878 -34.71554 -32.13956 -31.27238 -30.86930 -29.38212 -27.85333 -24.81606 -23.55517 -23.06193 -21.36225 -19.66069 -18.48289 -17.66223 -17.39738 -17.24879 -17.14033 -16.62648 -16.45660 -16.04536 -15.89727 -15.10096 -14.90761 -14.70765 -14.59765 -14.50931 -14.27053 -14.25110 -13.89157 -13.36142 -12.88539 -12.74415 -12.41250 -12.22345 -12.00093 -11.78902 -11.69866 -11.59650 -11.10206 -10.61005 -10.54407 -10.45433 -10.11815 -9.85228 -9.75830 -9.24318 -9.21025 -8.88882 -8.14384 -7.37588 -6.64488 -4.08965 0.61645 0.76483 1.35202 2.41666 2.99066 3.06191 3.14936 3.21040 3.22949 3.39046 3.62875 3.85858 4.04611 4.15063 4.33131 4.46398 4.67495 4.81686 4.85588 5.12095 5.16998 5.23998 5.45983 5.56078 5.58732 5.64854 5.72046 5.83366 6.21829 6.36008 6.47943 7.29994 7.37630 7.70279 8.13258 8.80954 8.85590 9.06239 9.54429 10.44332 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.003087 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.368501 B = 9068.587774 C =10015.814030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.032 3.968 3 Si 0.932 3.068 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.307 4.307 8 H 0.112 0.888 9 N -0.420 5.420 10 C 0.141 3.859 11 C 0.486 3.514 12 O -0.500 6.500 13 O -0.533 6.533 14 C 0.472 3.528 15 O -0.556 6.556 16 C -0.145 4.145 17 S 0.002 5.998 18 C -0.081 4.081 19 C -0.123 4.123 20 C -0.100 4.100 21 C 0.047 3.953 22 F -0.132 7.132 23 C 0.089 3.911 24 F -0.128 7.128 25 C -0.114 4.114 26 H 0.273 0.727 27 H 0.133 0.867 28 H 0.078 0.922 29 H 0.394 0.606 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 -11.612 -7.021 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.434 4.434 8 H 0.130 0.870 9 N -0.140 5.140 10 C 0.014 3.986 11 C 0.326 3.674 12 O -0.385 6.385 13 O -0.345 6.345 14 C 0.259 3.741 15 O -0.439 6.439 16 C -0.296 4.296 17 S 0.249 5.751 18 C -0.195 4.195 19 C -0.147 4.147 20 C -0.120 4.120 21 C 0.024 3.976 22 F -0.111 7.111 23 C 0.067 3.933 24 F -0.106 7.106 25 C -0.140 4.140 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.095 0.905 29 H 0.251 0.749 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.489 -11.397 -5.929 13.086 hybrid contribution -1.876 0.470 -0.329 1.962 sum -4.365 -10.926 -6.258 13.327 Atomic orbital electron populations 1.69796 1.06146 1.28187 1.47583 1.25283 0.95351 1.00183 0.96331 0.85772 0.80005 0.80531 0.77906 1.18952 1.20387 1.20715 1.19811 0.98008 0.82873 1.42720 0.87016 1.43360 1.20149 1.04920 1.45526 1.20758 0.81407 1.05173 0.91213 1.23784 0.83419 0.71174 0.89034 1.90644 1.85826 1.44670 1.17368 1.84513 1.17289 1.86257 1.46396 1.18948 0.87752 0.82991 0.84398 1.90593 1.25923 1.85480 1.41890 1.24008 1.03822 0.96768 1.05040 1.86350 1.31184 0.92408 1.65120 1.22254 0.98692 0.98465 1.00128 1.21186 0.94671 0.99869 0.99003 1.20972 1.00975 0.89650 1.00435 1.17575 0.92821 0.85303 1.01927 1.91512 1.77348 1.56664 1.85536 1.17476 0.94757 0.79881 1.01147 1.91531 1.89822 1.36213 1.93073 1.20550 1.01511 0.89305 1.02597 0.91658 0.84939 0.90456 0.74909 0.87580 0.87751 0.84190 0.83426 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.56 9.28 55.50 0.52 -21.04 16 2 C 0.03 0.78 4.87 -17.47 -0.09 0.70 16 3 Si 0.93 19.33 29.60 -169.99 -5.03 14.30 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.31 -7.90 9.34 -14.93 -0.14 -8.04 16 8 H 0.11 3.04 7.37 -52.49 -0.39 2.65 16 9 N -0.42 -9.71 2.18 -116.09 -0.25 -9.97 16 10 C 0.14 2.73 4.97 -5.19 -0.03 2.71 16 11 C 0.49 9.71 5.86 36.01 0.21 9.92 16 12 O -0.50 -12.05 16.79 -18.75 -0.31 -12.37 16 13 O -0.53 -8.48 13.42 -39.25 -0.53 -9.01 16 14 C 0.47 10.57 7.43 -10.99 -0.08 10.49 16 15 O -0.56 -14.41 15.51 5.55 0.09 -14.32 16 16 C -0.14 -2.39 3.43 36.00 0.12 -2.26 16 17 S 0.00 0.03 21.06 -107.50 -2.26 -2.23 16 18 C -0.08 -1.03 6.11 -39.07 -0.24 -1.27 16 19 C -0.12 -1.35 9.36 -39.36 -0.37 -1.72 16 20 C -0.10 -1.00 10.01 -39.56 -0.40 -1.40 16 21 C 0.05 0.55 7.30 -39.35 -0.29 0.26 16 22 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 23 C 0.09 1.08 7.30 -39.39 -0.29 0.79 16 24 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 25 C -0.11 -1.35 9.77 -39.31 -0.38 -1.74 16 26 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 27 H 0.13 2.69 6.37 -51.93 -0.33 2.36 16 28 H 0.08 1.13 6.69 -51.92 -0.35 0.79 16 29 H 0.39 4.73 9.10 45.56 0.41 5.15 16 30 H 0.11 1.39 7.02 -51.92 -0.36 1.03 16 31 H 0.10 1.66 7.12 -51.92 -0.37 1.29 16 32 H 0.14 1.38 5.87 -52.49 -0.31 1.07 16 33 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -31.62 323.25 -6.47 -38.09 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -1.67 Total: 6.38 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.96 Total: 8.43 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.26 Total: -31.01 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.76 Total: -35.70 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.26 Total: -2.23 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.62 -6.47 -38.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.002 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds