Wall clock time and date at job start Tue Mar 31 2020 16:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48500 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47252 * 299.99787 * 3 2 1 6 6 H 1.48504 * 109.47509 * 59.99739 * 3 2 1 7 7 C 1.38949 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00318 * 201.66053 * 7 2 1 9 9 N 1.37097 * 119.99807 * 21.65918 * 7 2 1 10 10 C 1.46501 * 120.00094 * 16.50168 * 9 7 2 11 11 C 1.50700 * 109.47543 * 264.07001 * 10 9 7 12 12 O 1.20822 * 119.99648 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99876 * 179.97438 * 11 10 9 14 14 C 1.34774 * 120.00115 * 196.50661 * 9 7 2 15 15 O 1.21292 * 120.00140 * 359.97438 * 14 9 7 16 16 C 1.50696 * 120.00286 * 179.97438 * 14 9 7 17 17 S 1.81403 * 109.47476 * 179.97438 * 16 14 9 18 18 C 1.76193 * 103.00306 * 180.02562 * 17 16 14 19 19 C 1.38964 * 120.04378 * 0.02562 * 18 17 16 20 20 C 1.38115 * 119.98711 * 179.97438 * 19 18 17 21 21 C 1.38430 * 120.08193 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.95687 * 180.28599 * 21 20 19 23 23 C 1.38677 * 120.08685 * 0.02562 * 21 20 19 24 24 F 1.35102 * 119.99261 * 180.02562 * 23 21 20 25 25 C 1.38309 * 120.01299 * 0.02562 * 23 21 20 26 26 H 0.97004 * 120.00131 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47098 * 24.07091 * 10 9 7 28 28 H 1.09007 * 109.46764 * 144.06659 * 10 9 7 29 29 H 0.96701 * 116.99712 * 179.97438 * 13 11 10 30 30 H 1.09002 * 109.47186 * 60.00067 * 16 14 9 31 31 H 1.09001 * 109.47392 * 299.99880 * 16 14 9 32 32 H 1.07997 * 120.00768 * 359.97355 * 19 18 17 33 33 H 1.08001 * 119.95670 * 180.02562 * 20 19 18 34 34 H 1.07994 * 120.03848 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0316 -1.2363 0.3457 9 7 1.3959 -2.3489 -0.4372 10 6 0.1673 -2.2650 -1.2308 11 6 -1.0272 -2.4244 -0.3259 12 8 -0.8685 -2.5906 0.8603 13 8 -2.2673 -2.3808 -0.8376 14 6 1.9236 -3.5523 -0.1373 15 8 2.9409 -3.6218 0.5194 16 6 1.2496 -4.8115 -0.6179 17 16 2.1943 -6.2550 -0.0571 18 6 1.2706 -7.6089 -0.7037 19 6 0.1175 -7.3746 -1.4430 20 6 -0.6054 -8.4368 -1.9497 21 6 -0.1825 -9.7352 -1.7225 22 9 -0.8884 -10.7721 -2.2242 23 6 0.9677 -9.9727 -0.9851 24 9 1.3790 -11.2407 -0.7650 25 6 1.6939 -8.9119 -0.4751 26 1 -0.4850 0.8401 -0.0004 27 1 0.1206 -1.2954 -1.7267 28 1 0.1640 -3.0568 -1.9799 29 1 -3.0019 -2.4883 -0.2180 30 1 1.2058 -4.8072 -1.7071 31 1 0.2383 -4.8593 -0.2138 32 1 -0.2133 -6.3621 -1.6213 33 1 -1.5012 -8.2541 -2.5246 34 1 2.5895 -9.0964 0.0996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:41 Heat of formation + Delta-G solvation = -188.489897 kcal Electronic energy + Delta-G solvation = -25349.124954 eV Core-core repulsion = 21009.518138 eV Total energy + Delta-G solvation = -4339.606817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.54599 -49.62014 -41.26011 -39.96313 -39.79858 -37.06859 -36.38067 -33.92643 -32.22051 -31.88856 -30.72618 -29.44144 -26.56870 -24.49973 -23.97788 -22.88113 -21.24243 -19.53399 -19.05760 -18.72155 -18.60495 -18.21565 -18.16689 -17.49686 -17.38364 -17.15254 -16.48865 -16.24080 -16.04280 -15.98780 -15.86581 -15.60868 -15.11503 -15.04700 -14.42371 -14.29074 -14.19452 -13.68796 -13.56542 -13.44181 -13.26714 -13.16558 -12.70452 -12.52529 -12.39517 -12.14429 -12.10326 -11.55879 -11.25017 -10.98453 -10.70354 -10.65309 -10.11379 -9.92778 -8.52124 -8.48469 -5.99580 -0.30565 -0.10226 0.17167 1.27633 1.33014 1.45157 1.58254 1.64799 1.80118 2.17520 2.22822 2.52006 2.73655 2.84690 3.04579 3.23768 3.49613 3.64193 3.81666 3.92457 3.97226 4.12481 4.30300 4.37647 4.66421 4.73931 4.77700 4.84587 4.90626 4.95788 5.44281 5.59334 5.91878 5.96341 6.30920 7.03693 7.22528 7.42929 7.79965 8.58260 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.003087 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.368501 B = 9068.587774 C =10015.814030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.006 3.994 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.286 1.286 7 C -0.342 4.342 8 H 0.081 0.919 9 N -0.433 5.433 10 C 0.136 3.864 11 C 0.495 3.505 12 O -0.548 6.548 13 O -0.516 6.516 14 C 0.461 3.539 15 O -0.605 6.605 16 C -0.128 4.128 17 S -0.045 6.045 18 C -0.083 4.083 19 C -0.117 4.117 20 C -0.087 4.087 21 C 0.045 3.955 22 F -0.135 7.135 23 C 0.078 3.922 24 F -0.134 7.134 25 C -0.114 4.114 26 H 0.276 0.724 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.415 0.585 30 H 0.146 0.854 31 H 0.114 0.886 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 -11.853 -8.940 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.197 4.197 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.184 1.184 6 H -0.212 1.212 7 C -0.469 4.469 8 H 0.099 0.901 9 N -0.152 5.152 10 C 0.011 3.989 11 C 0.337 3.663 12 O -0.437 6.437 13 O -0.328 6.328 14 C 0.250 3.750 15 O -0.491 6.491 16 C -0.279 4.279 17 S 0.202 5.798 18 C -0.197 4.197 19 C -0.141 4.141 20 C -0.107 4.107 21 C 0.022 3.978 22 F -0.114 7.114 23 C 0.056 3.944 24 F -0.113 7.113 25 C -0.139 4.139 26 H 0.086 0.914 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.274 0.726 30 H 0.164 0.836 31 H 0.132 0.868 32 H 0.176 0.824 33 H 0.199 0.801 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.533 -11.654 -7.894 14.788 hybrid contribution -1.356 0.454 0.254 1.452 sum -5.889 -11.199 -7.641 14.781 Atomic orbital electron populations 1.69865 1.06719 1.28879 1.47159 1.25908 0.96103 1.02203 0.95470 0.84932 0.78403 0.77110 0.78177 1.19759 1.18382 1.21229 1.19664 0.97525 0.84933 1.44772 0.90105 1.43484 1.21293 1.04574 1.45806 1.20981 0.79862 1.06673 0.91431 1.23798 0.84515 0.69817 0.88182 1.90639 1.86680 1.47087 1.19341 1.84445 1.16650 1.85332 1.46423 1.19832 0.87146 0.84510 0.83529 1.90556 1.28080 1.86570 1.43900 1.23784 1.03066 0.93814 1.07225 1.86553 1.32671 0.93866 1.66759 1.22050 0.99321 0.97085 1.01284 1.21434 0.93699 1.01104 0.97882 1.21261 1.01492 0.88338 0.99605 1.17796 0.92503 0.85930 1.01569 1.91510 1.77336 1.56990 1.85529 1.17565 0.95300 0.79648 1.01847 1.91515 1.89976 1.36552 1.93212 1.20601 1.01740 0.89131 1.02438 0.91371 0.85896 0.85221 0.72585 0.83622 0.86755 0.82392 0.80133 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.03 9.28 21.66 0.20 -42.83 16 2 C 0.01 0.27 4.87 84.93 0.41 0.69 16 3 Si 0.99 39.74 29.60 68.60 2.03 41.77 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 6 H -0.29 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.34 -18.02 9.34 84.04 0.79 -17.24 16 8 H 0.08 4.65 7.37 -2.91 -0.02 4.63 16 9 N -0.43 -20.03 2.18 -639.60 -1.39 -21.42 16 10 C 0.14 5.00 4.97 85.63 0.43 5.43 16 11 C 0.49 18.78 5.86 71.24 0.42 19.20 16 12 O -0.55 -26.07 16.79 21.98 0.37 -25.70 16 13 O -0.52 -14.73 13.42 -51.39 -0.69 -15.42 16 14 C 0.46 20.77 7.43 87.66 0.65 21.42 16 15 O -0.61 -32.57 15.51 -3.07 -0.05 -32.62 16 16 C -0.13 -4.00 3.43 71.23 0.24 -3.75 16 17 S -0.04 -1.38 21.06 -56.49 -1.19 -2.57 16 18 C -0.08 -1.96 6.11 22.60 0.14 -1.83 16 19 C -0.12 -2.17 9.36 22.41 0.21 -1.96 16 20 C -0.09 -1.41 10.01 22.29 0.22 -1.18 16 21 C 0.05 0.93 7.30 22.42 0.16 1.09 16 22 F -0.13 -2.95 17.18 44.97 0.77 -2.18 16 23 C 0.08 1.77 7.30 22.39 0.16 1.93 16 24 F -0.13 -3.24 17.18 44.97 0.77 -2.47 16 25 C -0.11 -2.57 9.77 22.44 0.22 -2.35 16 26 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 27 H 0.12 4.80 6.37 -2.38 -0.02 4.78 16 28 H 0.13 3.29 6.69 -2.38 -0.02 3.27 16 29 H 0.41 8.60 9.10 -74.06 -0.67 7.92 16 30 H 0.15 3.28 7.02 -2.39 -0.02 3.27 16 31 H 0.11 3.35 7.12 -2.39 -0.02 3.34 16 32 H 0.16 2.36 5.87 -2.91 -0.02 2.34 16 33 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -71.29 323.25 5.41 -65.89 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.53 Total: 16.10 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 4.06 Total: 21.44 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -1.19 Total: -64.25 kcal Atomic # 8 Polarization: -73.37 SS G_CDS: -0.37 Total: -73.74 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 1.54 Total: -4.64 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -1.19 Total: -2.57 kcal Total: -71.29 5.41 -65.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.604 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds