Wall clock time and date at job start Tue Mar 31 2020 16:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31393 * 1 3 3 Si 1.86797 * 120.00083 * 2 1 4 4 H 1.48496 * 109.47259 * 269.99555 * 3 2 1 5 5 H 1.48498 * 109.47409 * 30.00032 * 3 2 1 6 6 H 1.48503 * 109.47046 * 149.99520 * 3 2 1 7 7 C 1.39014 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99926 * 158.40685 * 7 2 1 9 9 N 1.36907 * 119.99830 * 338.41827 * 7 2 1 10 10 C 1.46499 * 120.00489 * 135.97706 * 9 7 2 11 11 C 1.50700 * 109.47080 * 280.85292 * 10 9 7 12 12 O 1.20821 * 119.99916 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00285 * 179.97438 * 11 10 9 14 14 C 1.34777 * 120.00126 * 315.97141 * 9 7 2 15 15 O 1.21646 * 119.99586 * 6.80572 * 14 9 7 16 16 C 1.47360 * 120.00270 * 186.80188 * 14 9 7 17 17 C 1.39905 * 120.07101 * 142.31102 * 16 14 9 18 18 C 1.36594 * 119.93269 * 180.02562 * 17 16 14 19 19 C 1.39319 * 120.06817 * 0.02562 * 18 17 16 20 20 S 1.76206 * 119.93191 * 179.97438 * 19 18 17 21 21 C 1.81398 * 103.00187 * 179.97438 * 20 19 18 22 22 F 1.39896 * 109.47183 * 300.00065 * 21 20 19 23 23 F 1.39902 * 109.46695 * 60.00304 * 21 20 19 24 24 C 1.39316 * 120.14129 * 0.23402 * 19 18 17 25 25 C 1.36604 * 120.07081 * 359.48578 * 24 19 18 26 26 H 0.97001 * 119.99398 * 5.05564 * 1 2 3 27 27 H 1.09010 * 109.46973 * 40.84730 * 10 9 7 28 28 H 1.08989 * 109.47622 * 160.84970 * 10 9 7 29 29 H 0.96698 * 117.00180 * 180.02562 * 13 11 10 30 30 H 1.08003 * 120.03256 * 359.97438 * 17 16 14 31 31 H 1.08001 * 119.96468 * 179.97438 * 18 17 16 32 32 H 1.08998 * 109.47006 * 180.02562 * 21 20 19 33 33 H 1.08002 * 119.96656 * 179.72311 * 24 19 18 34 34 H 1.07996 * 120.03596 * 180.23294 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4955 2.0463 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5455 1.4401 0.7002 7 6 2.0090 -1.2039 0.0005 8 1 3.0321 -1.2368 -0.3436 9 7 1.3965 -2.3478 0.4372 10 6 1.5501 -3.5946 -0.3165 11 6 0.6273 -3.5785 -1.5078 12 8 -0.0860 -2.6237 -1.7065 13 8 0.5976 -4.6248 -2.3481 14 6 0.6520 -2.3269 1.5605 15 8 0.4219 -1.2705 2.1181 16 6 0.1169 -3.5837 2.1133 17 6 0.0647 -3.7743 3.4983 18 6 -0.4315 -4.9406 4.0076 19 6 -0.8848 -5.9400 3.1494 20 16 -1.5235 -7.4434 3.8103 21 6 -1.9669 -8.3862 2.3253 22 9 -2.9200 -7.6749 1.5887 23 9 -0.8253 -8.5855 1.5415 24 6 -0.8292 -5.7556 1.7696 25 6 -0.3394 -4.5892 1.2542 26 1 -0.4849 0.8368 -0.0740 27 1 2.5814 -3.6885 -0.6571 28 1 1.3009 -4.4399 0.3247 29 1 -0.0101 -4.5684 -3.0981 30 1 0.4171 -3.0003 4.1641 31 1 -0.4716 -5.0884 5.0767 32 1 -2.3804 -9.3513 2.6177 33 1 -1.1772 -6.5341 1.1068 34 1 -0.3001 -4.4453 0.1845 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739086673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:23 Heat of formation + Delta-G solvation = -142.214888 kcal Electronic energy + Delta-G solvation = -26458.237995 eV Core-core repulsion = 22120.637813 eV Total energy + Delta-G solvation = -4337.600182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.54984 -47.54190 -40.12934 -38.98310 -37.47695 -35.40443 -34.21744 -32.31965 -31.04332 -30.59694 -27.69012 -27.26406 -25.25542 -23.06941 -22.55290 -21.27798 -19.71392 -18.82586 -18.16362 -17.73545 -17.39422 -17.26345 -16.75164 -16.28095 -15.68994 -15.41153 -14.89837 -14.62201 -14.44253 -14.26505 -14.07775 -13.86407 -13.74809 -13.50806 -13.19845 -12.92182 -12.72684 -12.41675 -12.09195 -11.85336 -11.40012 -11.06683 -10.97235 -10.86515 -10.77882 -10.66506 -10.52419 -10.23975 -9.76681 -9.74721 -8.90986 -8.83668 -8.34594 -7.71072 -7.31051 -6.11190 -3.90809 0.53416 1.05826 1.54621 1.68733 2.96741 3.29529 3.35257 3.39606 3.41867 3.42679 3.76189 4.01180 4.09774 4.22881 4.49098 4.75098 4.94200 4.96496 5.23358 5.47974 5.50899 5.60187 5.66326 5.81518 5.96250 6.04322 6.15106 6.29232 6.45588 6.72358 6.97029 7.13064 7.55567 8.14303 8.64317 8.88279 8.99080 9.49480 10.05971 10.93777 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.004069 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.937006 B = 6880.143598 C = 7885.605859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.080 3.920 3 Si 0.912 3.088 4 H -0.282 1.282 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.364 4.364 8 H 0.085 0.915 9 N -0.419 5.419 10 C 0.092 3.908 11 C 0.432 3.568 12 O -0.454 6.454 13 O -0.537 6.537 14 C 0.507 3.493 15 O -0.513 6.513 16 C -0.082 4.082 17 C -0.066 4.066 18 C -0.090 4.090 19 C -0.101 4.101 20 S -0.106 6.106 21 C 0.272 3.728 22 F -0.180 7.180 23 F -0.180 7.180 24 C -0.120 4.120 25 C -0.097 4.097 26 H 0.264 0.736 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.396 0.604 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.154 0.846 33 H 0.126 0.874 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -18.018 3.777 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.209 1.209 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.102 0.898 9 N -0.141 5.141 10 C -0.034 4.034 11 C 0.270 3.730 12 O -0.336 6.336 13 O -0.349 6.349 14 C 0.296 3.704 15 O -0.390 6.390 16 C -0.088 4.088 17 C -0.087 4.087 18 C -0.113 4.113 19 C -0.214 4.214 20 S 0.131 5.869 21 C 0.110 3.890 22 F -0.161 7.161 23 F -0.161 7.161 24 C -0.143 4.143 25 C -0.117 4.117 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.130 0.870 29 H 0.253 0.747 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.144 0.856 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.504 -17.491 5.486 18.501 hybrid contribution -0.073 1.188 -2.253 2.548 sum -2.578 -16.302 3.233 16.818 Atomic orbital electron populations 1.69940 1.06648 1.27378 1.38158 1.25300 0.94717 0.99500 0.93965 0.86226 0.79927 0.82297 0.77702 1.20854 1.20856 1.19356 1.18962 0.96022 0.84250 1.49734 0.89759 1.42955 1.46233 1.06957 1.17926 1.21780 0.98446 0.93008 0.90161 1.24788 0.83684 0.80050 0.84502 1.90883 1.38387 1.32924 1.71413 1.84599 1.64152 1.46567 1.39618 1.17709 0.83462 0.87220 0.82055 1.90669 1.56942 1.30839 1.60562 1.20773 0.98220 0.95608 0.94184 1.20873 0.97192 0.96375 0.94215 1.20368 0.99431 0.92513 0.98943 1.21478 1.06550 0.97028 0.96326 1.86069 1.78102 1.13277 1.09479 1.24271 0.78334 0.98422 0.88021 1.93132 1.63856 1.80052 1.79106 1.93125 1.50708 1.95592 1.76686 1.20978 1.01255 0.99117 0.92919 1.21312 0.97570 0.92620 1.00213 0.92543 0.88221 0.87034 0.74676 0.84355 0.85192 0.82881 0.85633 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.91 11.75 55.50 0.65 -23.25 16 2 C 0.08 2.27 4.28 -17.45 -0.07 2.20 16 3 Si 0.91 21.84 29.61 -169.99 -5.03 16.81 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.36 -9.88 8.82 -15.00 -0.13 -10.01 16 8 H 0.08 2.16 7.92 -52.49 -0.42 1.75 16 9 N -0.42 -10.43 2.12 -117.34 -0.25 -10.68 16 10 C 0.09 1.81 5.47 -5.19 -0.03 1.78 16 11 C 0.43 8.70 6.36 36.01 0.23 8.93 16 12 O -0.45 -11.41 16.89 -18.75 -0.32 -11.72 16 13 O -0.54 -8.22 13.42 -39.26 -0.53 -8.74 16 14 C 0.51 12.94 6.81 -12.55 -0.09 12.85 16 15 O -0.51 -15.08 14.38 5.24 0.08 -15.01 16 16 C -0.08 -1.69 5.40 -104.94 -0.57 -2.26 16 17 C -0.07 -1.16 9.57 -39.55 -0.38 -1.54 16 18 C -0.09 -1.32 9.73 -39.77 -0.39 -1.71 16 19 C -0.10 -1.48 6.13 -38.78 -0.24 -1.72 16 20 S -0.11 -1.16 22.16 -107.50 -2.38 -3.54 16 21 C 0.27 2.48 5.37 101.05 0.54 3.02 16 22 F -0.18 -2.05 15.65 2.25 0.04 -2.02 16 23 F -0.18 -1.94 15.62 2.25 0.04 -1.91 16 24 C -0.12 -1.90 8.62 -39.77 -0.34 -2.24 16 25 C -0.10 -1.78 7.30 -39.55 -0.29 -2.07 16 26 H 0.26 7.67 8.32 -40.82 -0.34 7.33 16 27 H 0.10 1.73 8.12 -51.92 -0.42 1.31 16 28 H 0.11 1.95 4.29 -51.93 -0.22 1.72 16 29 H 0.40 4.47 9.10 45.56 0.41 4.88 16 30 H 0.14 2.36 8.03 -52.48 -0.42 1.94 16 31 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.13 1.83 4.53 -52.49 -0.24 1.59 16 34 H 0.13 2.47 4.00 -52.49 -0.21 2.26 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -36.18 317.27 -6.17 -42.35 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -1.49 Total: 5.68 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -1.75 Total: 7.25 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.40 Total: -33.93 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.77 Total: -35.48 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.07 Total: -3.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -2.38 Total: -3.54 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.18 -6.17 -42.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.860 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds