Wall clock time and date at job start Tue Mar 31 2020 16:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31393 * 1 3 3 Si 1.86797 * 120.00083 * 2 1 4 4 H 1.48496 * 109.47259 * 269.99555 * 3 2 1 5 5 H 1.48498 * 109.47409 * 30.00032 * 3 2 1 6 6 H 1.48503 * 109.47046 * 149.99520 * 3 2 1 7 7 C 1.39014 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99926 * 158.40685 * 7 2 1 9 9 N 1.36907 * 119.99830 * 338.41827 * 7 2 1 10 10 C 1.46499 * 120.00489 * 135.97706 * 9 7 2 11 11 C 1.50700 * 109.47080 * 280.85292 * 10 9 7 12 12 O 1.20821 * 119.99916 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00285 * 179.97438 * 11 10 9 14 14 C 1.34777 * 120.00126 * 315.97141 * 9 7 2 15 15 O 1.21646 * 119.99586 * 6.80572 * 14 9 7 16 16 C 1.47360 * 120.00270 * 186.80188 * 14 9 7 17 17 C 1.39905 * 120.07101 * 142.31102 * 16 14 9 18 18 C 1.36594 * 119.93269 * 180.02562 * 17 16 14 19 19 C 1.39319 * 120.06817 * 0.02562 * 18 17 16 20 20 S 1.76206 * 119.93191 * 179.97438 * 19 18 17 21 21 C 1.81398 * 103.00187 * 179.97438 * 20 19 18 22 22 F 1.39896 * 109.47183 * 300.00065 * 21 20 19 23 23 F 1.39902 * 109.46695 * 60.00304 * 21 20 19 24 24 C 1.39316 * 120.14129 * 0.23402 * 19 18 17 25 25 C 1.36604 * 120.07081 * 359.48578 * 24 19 18 26 26 H 0.97001 * 119.99398 * 5.05564 * 1 2 3 27 27 H 1.09010 * 109.46973 * 40.84730 * 10 9 7 28 28 H 1.08989 * 109.47622 * 160.84970 * 10 9 7 29 29 H 0.96698 * 117.00180 * 180.02562 * 13 11 10 30 30 H 1.08003 * 120.03256 * 359.97438 * 17 16 14 31 31 H 1.08001 * 119.96468 * 179.97438 * 18 17 16 32 32 H 1.08998 * 109.47006 * 180.02562 * 21 20 19 33 33 H 1.08002 * 119.96656 * 179.72311 * 24 19 18 34 34 H 1.07996 * 120.03596 * 180.23294 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4955 2.0463 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5455 1.4401 0.7002 7 6 2.0090 -1.2039 0.0005 8 1 3.0321 -1.2368 -0.3436 9 7 1.3965 -2.3478 0.4372 10 6 1.5501 -3.5946 -0.3165 11 6 0.6273 -3.5785 -1.5078 12 8 -0.0860 -2.6237 -1.7065 13 8 0.5976 -4.6248 -2.3481 14 6 0.6520 -2.3269 1.5605 15 8 0.4219 -1.2705 2.1181 16 6 0.1169 -3.5837 2.1133 17 6 0.0647 -3.7743 3.4983 18 6 -0.4315 -4.9406 4.0076 19 6 -0.8848 -5.9400 3.1494 20 16 -1.5235 -7.4434 3.8103 21 6 -1.9669 -8.3862 2.3253 22 9 -2.9200 -7.6749 1.5887 23 9 -0.8253 -8.5855 1.5415 24 6 -0.8292 -5.7556 1.7696 25 6 -0.3394 -4.5892 1.2542 26 1 -0.4849 0.8368 -0.0740 27 1 2.5814 -3.6885 -0.6571 28 1 1.3009 -4.4399 0.3247 29 1 -0.0101 -4.5684 -3.0981 30 1 0.4171 -3.0003 4.1641 31 1 -0.4716 -5.0884 5.0767 32 1 -2.3804 -9.3513 2.6177 33 1 -1.1772 -6.5341 1.1068 34 1 -0.3001 -4.4453 0.1845 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739086673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:22 Heat of formation + Delta-G solvation = -167.251014 kcal Electronic energy + Delta-G solvation = -26459.323643 eV Core-core repulsion = 22120.637813 eV Total energy + Delta-G solvation = -4338.685830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -50.33163 -48.33643 -41.73932 -40.50781 -39.13422 -36.97660 -36.10517 -34.21263 -32.39510 -32.13463 -29.40158 -28.00113 -27.10558 -24.64611 -23.88716 -22.85165 -21.40222 -19.79261 -19.20528 -18.95431 -18.76814 -18.50911 -18.01216 -17.87416 -17.30978 -16.96037 -16.51494 -16.33412 -15.80407 -15.46150 -15.25998 -15.21352 -14.87787 -14.68946 -14.66299 -14.25088 -14.14383 -13.80978 -13.76015 -13.35251 -13.10475 -12.76193 -12.70251 -12.35371 -12.32495 -12.20774 -12.13730 -11.49592 -11.46175 -11.04571 -10.85821 -10.29619 -10.17524 -9.31136 -8.78329 -8.18149 -6.01022 -0.30874 -0.26856 0.23010 0.62931 1.36759 1.37604 1.44573 1.52372 1.83451 2.32891 2.35106 2.77713 2.80801 2.96366 3.28286 3.35579 3.43041 3.62001 3.72360 3.87276 4.10294 4.20187 4.31809 4.42878 4.47821 4.62428 4.81980 4.97629 5.08112 5.34090 5.46736 5.63358 5.75512 6.11891 6.90740 7.02752 7.20203 7.51304 8.13768 8.87634 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.004069 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.937006 B = 6880.143598 C = 7885.605859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.029 3.971 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.258 1.258 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.435 5.435 10 C 0.088 3.912 11 C 0.446 3.554 12 O -0.512 6.512 13 O -0.513 6.513 14 C 0.499 3.501 15 O -0.569 6.569 16 C -0.117 4.117 17 C -0.067 4.067 18 C -0.081 4.081 19 C -0.098 4.098 20 S -0.070 6.070 21 C 0.266 3.734 22 F -0.193 7.193 23 F -0.188 7.188 24 C -0.120 4.120 25 C -0.098 4.098 26 H 0.255 0.745 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.419 0.581 30 H 0.134 0.866 31 H 0.165 0.835 32 H 0.210 0.790 33 H 0.142 0.858 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 -21.655 4.520 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.181 4.181 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.507 4.507 8 H 0.111 0.889 9 N -0.155 5.155 10 C -0.037 4.037 11 C 0.286 3.714 12 O -0.398 6.398 13 O -0.327 6.327 14 C 0.289 3.711 15 O -0.450 6.450 16 C -0.122 4.122 17 C -0.088 4.088 18 C -0.104 4.104 19 C -0.211 4.211 20 S 0.167 5.833 21 C 0.103 3.897 22 F -0.175 7.175 23 F -0.170 7.170 24 C -0.143 4.143 25 C -0.119 4.119 26 H 0.064 0.936 27 H 0.143 0.857 28 H 0.154 0.846 29 H 0.279 0.721 30 H 0.152 0.848 31 H 0.182 0.818 32 H 0.226 0.774 33 H 0.159 0.841 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.379 -21.210 6.189 22.222 hybrid contribution -0.158 1.952 -2.427 3.118 sum -2.537 -19.258 3.762 19.785 Atomic orbital electron populations 1.70102 1.08351 1.27199 1.41409 1.26174 0.95321 1.02925 0.93702 0.85303 0.78735 0.78153 0.78196 1.19375 1.22003 1.18233 1.19307 0.96580 0.85495 1.49308 0.88918 1.43062 1.45940 1.07907 1.18622 1.21938 0.99827 0.91547 0.90356 1.24616 0.82436 0.79734 0.84626 1.90887 1.40728 1.35296 1.72882 1.84508 1.64366 1.44018 1.39812 1.18485 0.82495 0.88304 0.81766 1.90606 1.59018 1.33279 1.62078 1.20432 1.01687 0.94429 0.95677 1.20946 0.97247 0.97604 0.92972 1.20669 0.97883 0.91165 1.00691 1.21928 1.04126 0.99018 0.95998 1.86005 1.76874 1.10273 1.10121 1.24929 0.77854 0.99989 0.86880 1.93112 1.64322 1.80624 1.79427 1.93111 1.51370 1.95585 1.76918 1.21102 1.00850 0.98390 0.93962 1.21178 0.98108 0.93095 0.99487 0.93567 0.85678 0.84594 0.72073 0.84768 0.81750 0.77402 0.84094 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -53.53 11.75 21.68 0.25 -53.28 16 2 C 0.03 1.68 4.28 84.94 0.36 2.05 16 3 Si 0.97 46.56 29.61 68.60 2.03 48.59 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.38 -21.32 8.82 84.09 0.74 -20.58 16 8 H 0.09 4.84 7.92 -2.91 -0.02 4.82 16 9 N -0.43 -22.30 2.12 -643.39 -1.36 -23.66 16 10 C 0.09 3.46 5.47 85.63 0.47 3.93 16 11 C 0.45 17.89 6.36 71.24 0.45 18.34 16 12 O -0.51 -26.46 16.89 21.98 0.37 -26.09 16 13 O -0.51 -14.73 13.42 -51.42 -0.69 -15.42 16 14 C 0.50 26.63 6.81 86.64 0.59 27.21 16 15 O -0.57 -35.43 14.38 -4.18 -0.06 -35.49 16 16 C -0.12 -4.89 5.40 -20.07 -0.11 -5.00 16 17 C -0.07 -2.35 9.57 22.29 0.21 -2.13 16 18 C -0.08 -2.20 9.73 22.15 0.22 -1.98 16 19 C -0.10 -2.56 6.13 22.79 0.14 -2.42 16 20 S -0.07 -1.23 22.16 -56.49 -1.25 -2.48 16 21 C 0.27 3.61 5.37 113.37 0.61 4.22 16 22 F -0.19 -3.71 15.65 44.97 0.70 -3.00 16 23 F -0.19 -3.32 15.62 44.97 0.70 -2.61 16 24 C -0.12 -3.55 8.62 22.15 0.19 -3.35 16 25 C -0.10 -3.58 7.30 22.29 0.16 -3.41 16 26 H 0.26 15.80 8.32 -92.71 -0.77 15.03 16 27 H 0.13 4.20 8.12 -2.38 -0.02 4.18 16 28 H 0.14 4.66 4.29 -2.39 -0.01 4.65 16 29 H 0.42 8.55 9.10 -74.06 -0.67 7.88 16 30 H 0.13 4.71 8.03 -2.91 -0.02 4.68 16 31 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.21 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.14 3.70 4.53 -2.91 -0.01 3.69 16 34 H 0.12 4.57 4.00 -2.91 -0.01 4.55 16 Total: -1.00 -84.59 317.27 5.27 -79.32 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.53 Total: 17.24 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 4.04 Total: 16.88 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -1.11 Total: -76.94 kcal Atomic # 8 Polarization: -76.62 SS G_CDS: -0.38 Total: -77.00 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 1.41 Total: -5.62 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -1.25 Total: -2.48 kcal Total: -84.59 5.27 -79.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.929 kcal (2) G-P(sol) polarization free energy of solvation -84.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds