Wall clock time and date at job start Tue Mar 31 2020 16:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86807 * 119.99523 * 2 1 4 4 H 1.48494 * 109.47034 * 270.00077 * 3 2 1 5 5 H 1.48496 * 109.47101 * 30.00678 * 3 2 1 6 6 H 1.48501 * 109.46670 * 150.00029 * 3 2 1 7 7 C 1.38796 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99929 * 359.97438 * 7 2 1 9 9 S 1.76200 * 119.99883 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99977 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47427 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99425 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.39081 * 119.99664 * 179.97438 * 13 11 10 15 15 N 1.29881 * 125.65282 * 0.02584 * 14 13 11 16 16 N 1.26249 * 117.66246 * 179.97438 * 15 14 13 17 17 C 1.29524 * 116.57808 * 0.02562 * 16 15 14 18 18 C 1.50700 * 126.14454 * 179.74061 * 17 16 15 19 19 C 1.52997 * 109.47321 * 90.02512 * 18 17 16 20 20 C 1.53003 * 109.47072 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46984 * 179.97438 * 20 19 18 22 22 O 1.20828 * 119.99977 * 359.97438 * 21 20 19 23 23 O 1.34235 * 120.00003 * 179.97438 * 21 20 19 24 24 S 1.71312 * 125.64885 * 180.02562 * 14 13 11 25 25 H 0.96993 * 120.00336 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47450 * 59.99839 * 10 9 7 27 27 H 1.09006 * 109.47062 * 300.00172 * 10 9 7 28 28 H 0.96997 * 120.00641 * 359.97438 * 13 11 10 29 29 H 1.09005 * 109.46818 * 210.02047 * 18 17 16 30 30 H 1.08999 * 109.47358 * 330.02027 * 18 17 16 31 31 H 1.09005 * 109.46795 * 299.99549 * 19 18 17 32 32 H 1.08999 * 109.47301 * 59.99480 * 19 18 17 33 33 H 1.09005 * 109.46828 * 299.99389 * 20 19 18 34 34 H 1.08999 * 109.47597 * 59.99521 * 20 19 18 35 35 H 0.96693 * 117.00103 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2018 -0.0012 10 6 4.0868 -2.9843 -0.0025 11 6 5.5732 -3.2322 -0.0026 12 8 6.3441 -2.2959 -0.0024 13 7 6.0459 -4.4944 -0.0030 14 6 7.4177 -4.7231 -0.0037 15 7 8.3381 -3.8066 -0.0035 16 7 9.5424 -4.1854 -0.0036 17 6 9.7477 -5.4643 -0.0045 18 6 11.0902 -6.1490 -0.0104 19 6 11.5505 -6.3813 1.4300 20 6 12.9138 -7.0759 1.4240 21 6 13.3675 -7.3041 2.8428 22 8 12.6721 -6.9473 3.7643 23 8 14.5443 -7.9037 3.0830 24 16 8.1736 -6.2605 -0.0049 25 1 -0.4850 0.8400 0.0004 26 1 3.6435 -3.4309 -0.8927 27 1 3.6442 -3.4320 0.8874 28 1 5.4294 -5.2432 -0.0029 29 1 11.0072 -7.1067 -0.5242 30 1 11.8160 -5.5211 -0.5271 31 1 11.6335 -5.4235 1.9439 32 1 10.8247 -7.0091 1.9467 33 1 12.8313 -8.0336 0.9101 34 1 13.6395 -6.4477 0.9074 35 1 14.7924 -8.0286 4.0091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739090968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:30 Heat of formation + Delta-G solvation = -64.934574 kcal Electronic energy + Delta-G solvation = -21634.080086 eV Core-core repulsion = 17885.964168 eV Total energy + Delta-G solvation = -3748.115918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.43469 -40.71480 -39.58398 -36.82528 -35.87592 -35.03468 -32.50188 -31.63932 -30.03578 -28.22187 -25.89737 -25.61739 -23.73951 -22.15234 -21.22997 -20.13610 -19.20409 -18.52441 -18.00132 -17.52092 -16.98022 -16.72782 -16.40251 -16.24959 -15.17832 -15.05889 -15.01581 -14.66683 -14.06285 -13.75168 -13.70729 -13.56727 -13.04160 -12.86978 -12.84680 -12.53375 -12.15735 -12.00756 -11.41990 -11.34177 -11.31280 -11.08542 -11.04825 -10.78013 -10.71685 -10.37778 -9.90715 -9.82833 -9.66430 -9.06193 -8.87296 -8.60995 -7.01774 -6.34752 -4.08537 0.26542 0.34331 0.97219 1.72068 2.32554 2.41350 2.54794 2.86923 2.96337 3.30158 3.47019 3.48122 3.81761 4.24185 4.26833 4.30519 4.41525 4.50114 4.65889 4.77827 4.91744 5.02733 5.04339 5.07623 5.13152 5.30256 5.53085 5.54978 5.70320 5.78928 5.89554 6.01989 6.86247 7.39123 7.87811 8.01081 8.34913 8.56146 9.10902 10.74161 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.031173 B = 0.001911 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.994977 B =14651.835022 C =14955.420868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.098 3.902 3 Si 0.855 3.145 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.525 4.525 8 H 0.090 0.910 9 S -0.132 6.132 10 C -0.121 4.121 11 C 0.521 3.479 12 O -0.442 6.442 13 N -0.630 5.630 14 C 0.245 3.755 15 N -0.273 5.273 16 N -0.219 5.219 17 C -0.003 4.003 18 C -0.031 4.031 19 C -0.109 4.109 20 C -0.112 4.112 21 C 0.476 3.524 22 O -0.512 6.512 23 O -0.520 6.520 24 S 0.095 5.905 25 H 0.272 0.728 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.425 0.575 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.024 -22.113 0.717 33.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.111 4.111 3 Si 0.680 3.320 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.672 4.672 8 H 0.108 0.892 9 S 0.094 5.906 10 C -0.272 4.272 11 C 0.304 3.696 12 O -0.307 6.307 13 N -0.284 5.284 14 C -0.125 4.125 15 N -0.117 5.117 16 N -0.055 5.055 17 C -0.286 4.286 18 C -0.073 4.073 19 C -0.148 4.148 20 C -0.150 4.150 21 C 0.319 3.681 22 O -0.400 6.400 23 O -0.332 6.332 24 S 0.334 5.666 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.263 0.737 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 25.743 -19.841 0.552 32.506 hybrid contribution -1.139 -0.797 0.633 1.528 sum 24.604 -20.638 1.185 32.135 Atomic orbital electron populations 1.69925 1.05889 1.27898 1.47643 1.24691 0.94455 0.98967 0.93028 0.86760 0.81922 0.83303 0.80049 1.19099 1.19787 1.15881 1.22276 0.87942 0.97664 1.59337 0.89183 1.84947 1.09681 0.98552 1.97462 1.23285 0.91624 1.05694 1.06571 1.20860 0.91458 0.81223 0.76017 1.90864 1.57990 1.40607 1.41197 1.43345 1.00925 1.11008 1.73085 1.26041 0.92274 0.92863 1.01288 1.71574 0.93181 1.26952 1.20003 1.71433 1.10981 1.11186 1.11879 1.29700 0.98520 0.92206 1.08178 1.20111 0.88873 1.00331 0.97952 1.21484 0.94849 1.02670 0.95813 1.21350 0.98804 1.04359 0.90447 1.23520 0.78208 0.73389 0.93019 1.90777 1.54763 1.47565 1.46874 1.84526 1.38576 1.73431 1.36686 1.84672 1.02449 1.07592 1.71864 0.91824 0.87671 0.87637 0.73657 0.88880 0.87736 0.89780 0.90350 0.87177 0.87003 0.72979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 13.97 55.49 0.78 -25.27 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.57 27.74 -169.99 -4.72 16.85 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.23 -5.94 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.72 10.04 30.94 0.31 -14.41 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.13 -3.28 18.55 -107.50 -1.99 -5.27 16 10 C -0.12 -2.18 6.16 36.01 0.22 -1.96 16 11 C 0.52 9.15 7.81 -10.99 -0.09 9.06 16 12 O -0.44 -9.81 14.54 5.56 0.08 -9.73 16 13 N -0.63 -8.16 5.41 -12.92 -0.07 -8.23 16 14 C 0.25 3.40 8.14 -87.06 -0.71 2.69 16 15 N -0.27 -4.73 9.74 29.97 0.29 -4.44 16 16 N -0.22 -3.25 11.65 33.58 0.39 -2.85 16 17 C 0.00 -0.03 7.05 -13.25 -0.09 -0.13 16 18 C -0.03 -0.16 5.84 -27.88 -0.16 -0.33 16 19 C -0.11 -0.63 4.49 -26.73 -0.12 -0.75 16 20 C -0.11 -0.38 5.81 -27.88 -0.16 -0.54 16 21 C 0.48 2.99 8.33 36.01 0.30 3.29 16 22 O -0.51 -5.33 16.74 -18.75 -0.31 -5.64 16 23 O -0.52 -2.24 13.42 -39.27 -0.53 -2.77 16 24 S 0.09 0.85 23.31 -107.50 -2.51 -1.65 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.11 1.69 8.14 -51.91 -0.42 1.27 16 27 H 0.11 1.71 8.14 -51.91 -0.42 1.29 16 28 H 0.43 3.54 8.82 -40.82 -0.36 3.18 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.41 0.33 9.10 45.56 0.41 0.75 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -39.80 344.50 -6.89 -46.69 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -2.90 Total: -2.52 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.60 Total: -0.36 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 1.39 Total: -40.80 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.76 Total: -18.14 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.85 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -4.50 Total: -6.92 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -39.80 -6.89 -46.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739090968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.241 kcal (2) G-P(sol) polarization free energy of solvation -39.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds