Wall clock time and date at job start Tue Mar 31 2020 16:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86807 * 119.99523 * 2 1 4 4 H 1.48494 * 109.47034 * 270.00077 * 3 2 1 5 5 H 1.48496 * 109.47101 * 30.00678 * 3 2 1 6 6 H 1.48501 * 109.46670 * 150.00029 * 3 2 1 7 7 C 1.38796 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99929 * 359.97438 * 7 2 1 9 9 S 1.76200 * 119.99883 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99977 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47427 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99425 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.39081 * 119.99664 * 179.97438 * 13 11 10 15 15 N 1.29881 * 125.65282 * 0.02584 * 14 13 11 16 16 N 1.26249 * 117.66246 * 179.97438 * 15 14 13 17 17 C 1.29524 * 116.57808 * 0.02562 * 16 15 14 18 18 C 1.50700 * 126.14454 * 179.74061 * 17 16 15 19 19 C 1.52997 * 109.47321 * 90.02512 * 18 17 16 20 20 C 1.53003 * 109.47072 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46984 * 179.97438 * 20 19 18 22 22 O 1.20828 * 119.99977 * 359.97438 * 21 20 19 23 23 O 1.34235 * 120.00003 * 179.97438 * 21 20 19 24 24 S 1.71312 * 125.64885 * 180.02562 * 14 13 11 25 25 H 0.96993 * 120.00336 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47450 * 59.99839 * 10 9 7 27 27 H 1.09006 * 109.47062 * 300.00172 * 10 9 7 28 28 H 0.96997 * 120.00641 * 359.97438 * 13 11 10 29 29 H 1.09005 * 109.46818 * 210.02047 * 18 17 16 30 30 H 1.08999 * 109.47358 * 330.02027 * 18 17 16 31 31 H 1.09005 * 109.46795 * 299.99549 * 19 18 17 32 32 H 1.08999 * 109.47301 * 59.99480 * 19 18 17 33 33 H 1.09005 * 109.46828 * 299.99389 * 20 19 18 34 34 H 1.08999 * 109.47597 * 59.99521 * 20 19 18 35 35 H 0.96693 * 117.00103 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2018 -0.0012 10 6 4.0868 -2.9843 -0.0025 11 6 5.5732 -3.2322 -0.0026 12 8 6.3441 -2.2959 -0.0024 13 7 6.0459 -4.4944 -0.0030 14 6 7.4177 -4.7231 -0.0037 15 7 8.3381 -3.8066 -0.0035 16 7 9.5424 -4.1854 -0.0036 17 6 9.7477 -5.4643 -0.0045 18 6 11.0902 -6.1490 -0.0104 19 6 11.5505 -6.3813 1.4300 20 6 12.9138 -7.0759 1.4240 21 6 13.3675 -7.3041 2.8428 22 8 12.6721 -6.9473 3.7643 23 8 14.5443 -7.9037 3.0830 24 16 8.1736 -6.2605 -0.0049 25 1 -0.4850 0.8400 0.0004 26 1 3.6435 -3.4309 -0.8927 27 1 3.6442 -3.4320 0.8874 28 1 5.4294 -5.2432 -0.0029 29 1 11.0072 -7.1067 -0.5242 30 1 11.8160 -5.5211 -0.5271 31 1 11.6335 -5.4235 1.9439 32 1 10.8247 -7.0091 1.9467 33 1 12.8313 -8.0336 0.9101 34 1 13.6395 -6.4477 0.9074 35 1 14.7924 -8.0286 4.0091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739090968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:29 Heat of formation + Delta-G solvation = -96.278959 kcal Electronic energy + Delta-G solvation = -21635.439281 eV Core-core repulsion = 17885.964168 eV Total energy + Delta-G solvation = -3749.475113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.45099 -41.19456 -40.85556 -37.26798 -36.71171 -35.92882 -34.68740 -32.51729 -31.19438 -29.09568 -27.87967 -26.66560 -24.46066 -23.11596 -21.61813 -21.12967 -20.46018 -19.60038 -19.00917 -18.63376 -17.85955 -17.39361 -17.33659 -17.17901 -17.12572 -16.28976 -16.06091 -15.61635 -15.28268 -15.13271 -14.88593 -14.46333 -14.18729 -13.94164 -13.50216 -13.37591 -13.16617 -13.04876 -12.75740 -12.66413 -12.49981 -12.38426 -11.92869 -11.84568 -11.74405 -11.60024 -11.35090 -11.18969 -10.86184 -10.60481 -10.57300 -9.92917 -9.04056 -8.53229 -6.24781 -0.63253 -0.52584 0.10558 0.89844 1.19809 1.27968 1.29686 1.40113 1.49164 1.70819 1.81941 2.22299 2.22851 2.60994 2.85355 3.08062 3.41991 3.83242 3.87793 4.05377 4.10702 4.14700 4.23344 4.37898 4.63604 4.65085 4.75019 4.79905 4.89151 5.11984 5.27286 5.69440 5.69622 5.84768 6.10851 6.75883 6.92353 7.03461 7.62230 8.58694 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.031173 B = 0.001911 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.994977 B =14651.835022 C =14955.420868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.049 3.951 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.240 1.240 7 C -0.526 4.526 8 H 0.070 0.930 9 S -0.177 6.177 10 C -0.104 4.104 11 C 0.530 3.470 12 O -0.497 6.497 13 N -0.611 5.611 14 C 0.205 3.795 15 N -0.327 5.327 16 N -0.269 5.269 17 C 0.006 3.994 18 C -0.031 4.031 19 C -0.105 4.105 20 C -0.105 4.105 21 C 0.477 3.523 22 O -0.564 6.564 23 O -0.516 6.516 24 S 0.198 5.802 25 H 0.277 0.723 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.447 0.553 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.084 -25.112 -0.080 36.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.164 1.164 7 C -0.674 4.674 8 H 0.088 0.912 9 S 0.050 5.950 10 C -0.255 4.255 11 C 0.314 3.686 12 O -0.366 6.366 13 N -0.267 5.267 14 C -0.165 4.165 15 N -0.171 5.171 16 N -0.104 5.104 17 C -0.277 4.277 18 C -0.073 4.073 19 C -0.144 4.144 20 C -0.142 4.142 21 C 0.322 3.678 22 O -0.456 6.456 23 O -0.329 6.329 24 S 0.439 5.561 25 H 0.087 0.913 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.289 0.711 29 H 0.154 0.846 30 H 0.136 0.864 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 27.823 -22.921 -0.247 36.049 hybrid contribution -1.582 -0.201 0.904 1.833 sum 26.241 -23.122 0.657 34.980 Atomic orbital electron populations 1.69995 1.07122 1.28995 1.48991 1.25472 0.95209 1.01995 0.92974 0.85945 0.80654 0.80103 0.80169 1.18764 1.18325 1.16413 1.22416 0.89749 0.96918 1.58300 0.91200 1.84952 1.07044 1.05402 1.97651 1.23228 0.92839 1.00476 1.08956 1.20582 0.90631 0.82151 0.75259 1.90852 1.58965 1.42670 1.44128 1.42805 1.01494 1.10123 1.72246 1.26217 0.91941 0.95507 1.02849 1.71504 0.94579 1.30066 1.20973 1.71400 1.10339 1.13612 1.15053 1.30688 1.01305 0.91667 1.03996 1.20449 0.86588 1.02077 0.98142 1.21373 0.96398 1.01197 0.95480 1.21425 0.97558 1.06242 0.89021 1.24109 0.77895 0.72113 0.93668 1.90767 1.56296 1.49892 1.48635 1.84502 1.37623 1.72669 1.38093 1.84256 0.99648 1.02688 1.69495 0.91340 0.85168 0.85287 0.71055 0.84638 0.86391 0.93018 0.91108 0.83641 0.84808 0.71387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.86 13.97 21.65 0.30 -54.56 16 2 C 0.05 2.86 5.50 84.86 0.47 3.33 16 3 Si 0.91 45.04 27.74 68.60 1.90 46.94 16 4 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.24 -12.02 6.74 99.48 0.67 -11.35 16 7 C -0.53 -29.88 10.04 67.95 0.68 -29.20 16 8 H 0.07 4.12 8.03 -2.91 -0.02 4.09 16 9 S -0.18 -8.81 18.55 -56.49 -1.05 -9.85 16 10 C -0.10 -3.65 6.16 71.24 0.44 -3.22 16 11 C 0.53 18.41 7.81 87.66 0.68 19.09 16 12 O -0.50 -22.61 14.54 -3.03 -0.04 -22.66 16 13 N -0.61 -15.00 5.41 -313.17 -1.69 -16.70 16 14 C 0.20 5.47 8.14 179.10 1.46 6.92 16 15 N -0.33 -11.49 9.74 -59.09 -0.58 -12.07 16 16 N -0.27 -7.94 11.65 -47.67 -0.56 -8.49 16 17 C 0.01 0.11 7.05 88.45 0.62 0.73 16 18 C -0.03 -0.22 5.84 29.85 0.17 -0.05 16 19 C -0.10 -0.98 4.49 30.59 0.14 -0.84 16 20 C -0.11 -0.37 5.81 29.85 0.17 -0.19 16 21 C 0.48 5.17 8.33 71.24 0.59 5.76 16 22 O -0.56 -11.64 16.74 21.96 0.37 -11.27 16 23 O -0.52 -3.33 13.42 -51.46 -0.69 -4.02 16 24 S 0.20 2.96 23.31 -56.49 -1.32 1.64 16 25 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 27 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 28 H 0.45 6.31 8.82 -92.71 -0.82 5.50 16 29 H 0.14 -0.10 8.14 -2.38 -0.02 -0.12 16 30 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.83 8.10 -2.38 -0.02 0.81 16 32 H 0.07 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.15 -0.45 8.14 -2.38 -0.02 -0.47 16 34 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.42 0.04 9.10 -74.06 -0.67 -0.63 16 Total: -1.00 -92.16 344.50 1.72 -90.43 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -0.36 Total: -1.74 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 5.43 Total: 2.35 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -2.52 Total: -91.82 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.37 Total: -37.95 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.94 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -2.36 Total: -8.21 kcal Total: -92.16 1.72 -90.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739090968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.845 kcal (2) G-P(sol) polarization free energy of solvation -92.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds