Wall clock time and date at job start Tue Mar 31 2020 16:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86791 * 120.00230 * 2 1 4 4 H 1.48498 * 109.47467 * 239.99943 * 3 2 1 5 5 H 1.48503 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47248 * 120.00038 * 3 2 1 7 7 C 1.38803 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00178 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99926 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47079 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99943 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00031 * 180.27849 * 11 10 9 14 14 C 1.46494 * 119.99735 * 179.72897 * 13 11 10 15 15 H 1.08999 * 109.47673 * 35.71954 * 14 13 11 16 16 C 1.50702 * 109.47144 * 155.71558 * 14 13 11 17 17 O 1.20830 * 119.99957 * 0.02562 * 16 14 13 18 18 O 1.34222 * 120.00477 * 179.97438 * 16 14 13 19 19 C 1.50700 * 109.47242 * 275.71433 * 14 13 11 20 20 C 1.38209 * 119.99777 * 335.88001 * 19 14 13 21 21 C 1.38431 * 119.99802 * 179.97438 * 20 19 14 22 22 F 1.35105 * 119.99596 * 179.97438 * 21 20 19 23 23 C 1.38468 * 120.00228 * 0.02562 * 21 20 19 24 24 C 1.38158 * 119.99957 * 359.97438 * 23 21 20 25 25 C 1.38432 * 120.00223 * 155.60358 * 19 14 13 26 26 F 1.35096 * 119.99966 * 0.02562 * 25 19 14 27 27 H 0.96997 * 119.99507 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46721 * 60.00489 * 10 9 7 29 29 H 1.08997 * 109.47630 * 300.00145 * 10 9 7 30 30 H 0.97000 * 119.99650 * 359.72411 * 13 11 10 31 31 H 0.96705 * 117.00447 * 179.97438 * 18 16 14 32 32 H 1.08002 * 120.00055 * 359.97438 * 20 19 14 33 33 H 1.07995 * 119.99973 * 179.97438 * 23 21 20 34 34 H 1.07999 * 120.00152 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0021 11 6 1.9873 -5.3028 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8441 -6.3432 0.0029 14 6 2.3302 -7.7151 0.0093 15 1 1.4214 -7.7655 -0.5902 16 6 3.3668 -8.6424 -0.5709 17 8 4.4263 -8.2025 -0.9504 18 8 3.1136 -9.9572 -0.6652 19 6 2.0218 -8.1294 1.4251 20 6 2.6635 -7.5109 2.4814 21 6 2.3798 -7.8911 3.7819 22 9 3.0075 -7.2869 4.8145 23 6 1.4535 -8.8914 4.0244 24 6 0.8120 -9.5096 2.9684 25 6 1.0915 -9.1254 1.6677 26 9 0.4606 -9.7264 0.6354 27 1 -0.4849 0.8401 0.0004 28 1 3.1250 -3.7318 0.8875 29 1 3.1238 -3.7311 -0.8924 30 1 3.8008 -6.1835 0.0020 31 1 3.8088 -10.5121 -1.0446 32 1 3.3863 -6.7310 2.2923 33 1 1.2325 -9.1883 5.0389 34 1 0.0898 -10.2900 3.1575 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739091849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:00 Heat of formation + Delta-G solvation = -207.211588 kcal Electronic energy + Delta-G solvation = -25407.899087 eV Core-core repulsion = 21067.480437 eV Total energy + Delta-G solvation = -4340.418650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.99996 -49.99430 -42.06873 -40.59826 -39.73103 -37.42641 -36.19544 -34.58219 -33.12028 -31.43148 -30.74753 -28.52176 -27.61432 -24.40320 -23.86860 -22.74908 -21.70961 -20.05191 -19.36460 -18.98301 -18.60066 -18.42891 -18.31989 -17.45728 -17.04212 -16.87455 -16.83897 -16.55505 -16.39431 -16.33597 -15.83394 -15.41966 -15.32105 -14.90309 -14.70207 -14.49074 -14.25271 -13.94927 -13.64953 -13.55380 -13.17380 -13.02767 -12.86797 -12.73857 -12.64741 -12.29277 -12.01512 -11.76160 -11.20672 -11.12768 -10.67714 -10.30486 -10.26931 -9.64397 -8.66798 -8.34644 -6.12522 -0.25610 -0.10658 0.83970 1.07467 1.36851 1.41799 1.44424 1.52110 1.68244 2.07575 2.26901 2.38625 2.95581 2.99949 3.07011 3.24136 3.28412 3.54207 3.70967 3.83330 3.92364 4.06493 4.13367 4.25539 4.47985 4.49656 4.78097 4.84969 4.89983 4.95758 5.05542 5.34108 5.42495 5.65611 6.17152 6.20158 6.74861 6.97804 7.07131 8.74225 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003226 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.332215 B = 8677.802197 C = 9383.200432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.139 6.139 10 C -0.131 4.131 11 C 0.547 3.453 12 O -0.544 6.544 13 N -0.704 5.704 14 C 0.199 3.801 15 H 0.131 0.869 16 C 0.501 3.499 17 O -0.521 6.521 18 O -0.492 6.492 19 C -0.123 4.123 20 C -0.117 4.117 21 C 0.076 3.924 22 F -0.140 7.140 23 C -0.105 4.105 24 C -0.116 4.116 25 C 0.108 3.892 26 F -0.128 7.128 27 H 0.271 0.729 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.423 0.577 31 H 0.438 0.562 32 H 0.144 0.856 33 H 0.179 0.821 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 -23.960 5.412 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.088 5.912 10 C -0.282 4.282 11 C 0.334 3.666 12 O -0.420 6.420 13 N -0.362 5.362 14 C 0.091 3.909 15 H 0.149 0.851 16 C 0.342 3.658 17 O -0.410 6.410 18 O -0.306 6.306 19 C -0.126 4.126 20 C -0.136 4.136 21 C 0.056 3.944 22 F -0.118 7.118 23 C -0.124 4.124 24 C -0.134 4.134 25 C 0.088 3.912 26 F -0.106 7.106 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.262 0.738 31 H 0.302 0.698 32 H 0.162 0.838 33 H 0.197 0.803 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.867 -23.858 5.446 25.165 hybrid contribution 2.459 1.177 -0.460 2.765 sum 8.326 -22.681 4.986 24.670 Atomic orbital electron populations 1.70165 1.07910 1.28695 1.47888 1.26077 0.95921 1.03174 0.93678 0.85039 0.77848 0.75871 0.79474 1.18737 1.20394 1.18706 1.23183 0.95415 0.92039 1.59061 0.89881 1.85532 1.09734 0.98893 1.97075 1.23365 1.04076 0.93435 1.07303 1.20076 0.85984 0.86230 0.74335 1.90728 1.16793 1.85704 1.48751 1.45524 1.11347 1.02644 1.76662 1.18804 0.96769 0.81274 0.94020 0.85142 1.22498 0.85950 0.82740 0.74583 1.90753 1.26294 1.77577 1.46380 1.84471 1.51506 1.18011 1.76632 1.19575 0.99726 0.98845 0.94428 1.20902 1.01335 1.00776 0.90609 1.17794 0.96658 0.96192 0.83731 1.91523 1.80930 1.82337 1.57050 1.21417 0.94406 0.94240 1.02322 1.21338 1.01431 1.01911 0.88726 1.17585 0.93811 0.94121 0.85653 1.91536 1.80092 1.81616 1.57368 0.91963 0.86738 0.86873 0.73798 0.69794 0.83779 0.80335 0.79993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 2 C 0.02 0.93 5.49 84.86 0.47 1.40 16 3 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.55 -30.98 9.50 67.96 0.65 -30.33 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 9 S -0.14 -7.57 20.57 -56.49 -1.16 -8.73 16 10 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 11 C 0.55 19.46 7.80 87.66 0.68 20.14 16 12 O -0.54 -23.77 15.54 -3.05 -0.05 -23.82 16 13 N -0.70 -18.44 3.67 -449.69 -1.65 -20.09 16 14 C 0.20 4.74 2.45 43.50 0.11 4.84 16 15 H 0.13 3.45 7.27 -2.39 -0.02 3.43 16 16 C 0.50 9.93 7.68 71.24 0.55 10.48 16 17 O -0.52 -12.25 16.59 21.95 0.36 -11.88 16 18 O -0.49 -6.60 13.14 -51.34 -0.67 -7.27 16 19 C -0.12 -2.80 4.94 -19.83 -0.10 -2.90 16 20 C -0.12 -2.64 9.30 22.31 0.21 -2.44 16 21 C 0.08 1.56 7.30 22.37 0.16 1.72 16 22 F -0.14 -3.17 17.27 44.97 0.78 -2.39 16 23 C -0.11 -1.56 10.02 22.31 0.22 -1.34 16 24 C -0.12 -1.69 10.02 22.31 0.22 -1.47 16 25 C 0.11 2.20 7.16 22.37 0.16 2.36 16 26 F -0.13 -2.73 16.45 44.97 0.74 -1.99 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.11 3.94 8.14 -2.39 -0.02 3.93 16 29 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 30 H 0.42 9.29 7.77 -92.71 -0.72 8.56 16 31 H 0.44 1.54 9.10 -74.05 -0.67 0.86 16 32 H 0.14 3.17 7.24 -2.91 -0.02 3.15 16 33 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -78.04 335.04 4.23 -73.80 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.19 Total: 14.29 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 3.77 Total: -2.15 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -1.37 Total: -75.19 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.36 Total: -42.98 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 1.52 Total: -4.38 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.16 Total: -8.73 kcal Total: -78.04 4.23 -73.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739091849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.409 kcal (2) G-P(sol) polarization free energy of solvation -78.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds