Wall clock time and date at job start Tue Mar 31 2020 17:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35533 * 125.67932 * 2 1 4 4 C 1.35450 * 108.86873 * 179.97438 * 3 2 1 5 5 N 1.48014 * 126.06382 * 180.02562 * 4 3 2 6 6 O 1.21801 * 120.00179 * 359.97438 * 5 4 3 7 7 O 1.21798 * 119.99988 * 179.97438 * 5 4 3 8 8 C 1.39834 * 107.86606 * 359.97438 * 4 3 2 9 9 C 1.37649 * 125.67293 * 179.69791 * 2 1 3 10 10 C 1.46677 * 126.23884 * 0.03563 * 9 2 1 11 11 O 1.21695 * 119.99609 * 5.55918 * 10 9 2 12 12 N 1.34777 * 120.00333 * 185.56554 * 10 9 2 13 13 S 1.65605 * 120.00029 * 185.09485 * 12 10 9 14 14 O 1.42098 * 104.27548 * 181.06857 * 13 12 10 15 15 O 1.42099 * 104.27642 * 308.92331 * 13 12 10 16 16 C 1.81394 * 104.44991 * 64.99751 * 13 12 10 17 17 C 1.52996 * 109.47329 * 180.02562 * 16 13 12 18 18 C 1.50699 * 109.47542 * 179.97438 * 17 16 13 19 19 H 1.07996 * 119.99655 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00356 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00001 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47308 * 90.00242 * 22 20 18 24 24 H 1.48499 * 109.47437 * 210.00790 * 22 20 18 25 25 H 1.48502 * 109.47132 * 330.00325 * 22 20 18 26 26 H 1.08996 * 109.47635 * 86.08703 * 1 2 3 27 27 H 1.09000 * 109.47138 * 326.08918 * 1 2 3 28 28 H 1.09001 * 109.47085 * 206.09388 * 1 2 3 29 29 H 1.08003 * 125.56295 * 359.97438 * 3 2 1 30 30 H 1.08003 * 126.45519 * 180.02562 * 8 4 3 31 31 H 0.96996 * 119.99843 * 5.09114 * 12 10 9 32 32 H 1.09004 * 109.46987 * 300.00184 * 16 13 12 33 33 H 1.08996 * 109.47590 * 59.99764 * 16 13 12 34 34 H 1.09004 * 109.47211 * 300.00016 * 17 16 13 35 35 H 1.09004 * 109.47227 * 59.99576 * 17 16 13 36 36 H 0.96995 * 120.00679 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 0.0006 5 7 4.7322 1.6026 0.0013 6 8 4.5812 2.8112 0.0010 7 8 5.8544 1.1291 0.0022 8 6 3.5779 -0.6889 0.0015 9 6 2.2677 -1.1182 0.0059 10 6 1.8123 -2.5125 0.0125 11 8 0.6263 -2.7656 -0.0889 12 7 2.7073 -3.5132 0.1311 13 16 2.2090 -5.0880 0.0121 14 8 3.3944 -5.8464 0.2092 15 8 1.1204 -5.1808 0.9206 16 6 1.6265 -5.2505 -1.6981 17 6 1.1333 -6.6792 -1.9354 18 6 0.6488 -6.8140 -3.3560 19 1 0.6882 -5.9654 -4.0227 20 6 0.1541 -8.0205 -3.8041 21 7 -0.2683 -8.1383 -5.0439 22 14 0.0852 -9.4881 -2.6505 23 1 -1.2194 -9.4996 -1.9414 24 1 0.2339 -10.7409 -3.4339 25 1 1.1866 -9.3907 -1.6592 26 1 -0.3634 0.0701 -1.0252 27 1 -0.3633 0.8529 0.5733 28 1 -0.3633 -0.9229 0.4520 29 1 1.9082 2.1236 -0.0004 30 1 4.4582 -1.3145 0.0026 31 1 3.6432 -3.3110 0.2861 32 1 0.8089 -4.5507 -1.8714 33 1 2.4449 -5.0297 -2.3833 34 1 1.9506 -7.3792 -1.7619 35 1 0.3147 -6.8995 -1.2502 36 1 -0.6166 -8.9869 -5.3591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776116142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:00 Heat of formation + Delta-G solvation = -59.231407 kcal Electronic energy + Delta-G solvation = -25800.302575 eV Core-core repulsion = 21609.681094 eV Total energy + Delta-G solvation = -4190.621481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.91582 -41.82461 -39.94821 -37.02601 -36.71568 -35.95534 -35.19543 -34.09400 -33.81882 -31.61265 -30.79280 -28.36152 -26.15932 -25.91094 -24.36378 -21.84993 -21.43811 -21.06479 -19.92281 -19.23946 -18.76708 -17.93528 -17.78964 -17.59266 -17.08382 -16.65764 -16.55691 -15.87794 -15.42612 -15.34239 -14.94691 -14.45994 -14.35920 -13.82859 -13.69284 -13.22279 -13.19015 -12.91831 -12.64977 -12.07703 -12.02069 -11.93521 -11.81001 -11.51679 -11.43836 -11.36088 -11.34535 -11.23892 -10.89217 -10.53707 -10.23281 -10.09185 -9.76489 -9.50573 -9.46031 -8.73783 -6.23830 -4.26219 -0.03875 0.09832 0.40387 0.97333 1.70996 1.80697 2.30098 2.45172 3.21206 3.28737 3.31431 3.48302 3.73972 3.79846 3.99185 4.19640 4.27445 4.28823 4.46539 4.55409 4.61683 4.81042 5.02986 5.06873 5.20995 5.31905 5.35104 5.64325 5.89670 6.10167 6.16193 6.22290 6.67361 6.80780 6.93344 7.44439 7.44810 8.27646 8.76305 9.34803 10.88376 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.002860 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.198638 B = 9788.569160 C = 9987.890595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.386 5.386 3 C 0.119 3.881 4 C -0.131 4.131 5 N 0.063 4.937 6 O -0.173 6.173 7 O -0.158 6.158 8 C -0.073 4.073 9 C -0.037 4.037 10 C 0.616 3.384 11 O -0.484 6.484 12 N -1.046 6.046 13 S 2.563 3.437 14 O -0.944 6.944 15 O -0.931 6.931 16 C -0.567 4.567 17 C -0.005 4.005 18 C -0.521 4.521 19 H 0.079 0.921 20 C 0.073 3.927 21 N -0.893 5.893 22 Si 0.870 3.130 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.262 1.262 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.203 0.797 30 H 0.177 0.823 31 H 0.432 0.568 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 19.348 11.212 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.057 5.057 3 C -0.025 4.025 4 C -0.222 4.222 5 N 0.581 4.419 6 O -0.385 6.385 7 O -0.374 6.374 8 C -0.098 4.098 9 C -0.151 4.151 10 C 0.402 3.598 11 O -0.356 6.356 12 N -0.806 5.806 13 S 2.663 3.337 14 O -0.934 6.934 15 O -0.921 6.921 16 C -0.702 4.702 17 C -0.045 4.045 18 C -0.560 4.560 19 H 0.097 0.903 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.696 3.304 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.186 1.186 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.137 0.863 29 H 0.220 0.780 30 H 0.194 0.806 31 H 0.269 0.731 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.551 17.950 11.750 21.605 hybrid contribution 0.679 -0.048 -0.096 0.688 sum 3.231 17.902 11.654 21.604 Atomic orbital electron populations 1.22754 0.72897 1.07225 1.05802 1.44129 1.08449 1.04039 1.49076 1.21839 0.88020 0.93597 0.99082 1.20098 0.86044 0.90939 1.25109 1.42562 1.01448 1.00842 0.97012 1.94547 1.92896 0.96548 1.54493 1.94572 1.09209 1.79883 1.53769 1.21269 0.96438 0.92143 0.99927 1.20032 0.89121 0.88347 1.17591 1.16527 0.85205 0.83515 0.74544 1.91045 1.14632 1.84173 1.45784 1.55256 1.20006 1.26730 1.78607 1.06911 0.74999 0.71676 0.80146 1.93625 1.47438 1.65907 1.86457 1.93617 1.54734 1.82932 1.60835 1.30184 1.12186 1.10294 1.17499 1.19446 0.97205 0.86934 1.00882 1.20782 1.42708 0.98759 0.93798 0.90338 1.24970 0.94259 0.98655 0.95104 1.69865 1.41553 1.26095 1.15573 0.86922 0.79615 0.82448 0.81443 1.19595 1.20652 1.18601 0.88475 0.88381 0.86295 0.77991 0.80579 0.73145 0.84639 0.85095 0.94689 0.95040 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.25 10.64 59.85 0.64 0.89 16 2 N -0.39 -2.68 3.16 -120.24 -0.38 -3.06 16 3 C 0.12 0.74 11.06 -16.91 -0.19 0.55 16 4 C -0.13 -1.14 7.11 -80.35 -0.57 -1.71 16 5 N 0.06 0.70 4.45 33.77 0.15 0.85 16 6 O -0.17 -1.96 19.02 -29.46 -0.56 -2.52 16 7 O -0.16 -1.93 19.05 -29.46 -0.56 -2.49 16 8 C -0.07 -0.59 10.07 -39.12 -0.39 -0.98 16 9 C -0.04 -0.33 6.88 -81.98 -0.56 -0.89 16 10 C 0.62 6.94 7.51 -12.85 -0.10 6.84 16 11 O -0.48 -6.76 12.89 -13.13 -0.17 -6.93 16 12 N -1.05 -11.21 5.58 30.26 0.17 -11.05 16 13 S 2.56 39.99 5.12 -107.50 -0.55 39.44 16 14 O -0.94 -16.27 18.08 -57.54 -1.04 -17.31 16 15 O -0.93 -17.58 16.92 -65.15 -1.10 -18.68 16 16 C -0.57 -9.86 5.84 37.16 0.22 -9.64 16 17 C -0.01 -0.12 4.05 -27.89 -0.11 -0.23 16 18 C -0.52 -14.16 9.66 -34.44 -0.33 -14.49 16 19 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 20 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 21 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 22 Si 0.87 20.89 27.47 -169.99 -4.67 16.23 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.12 0.81 6.21 -51.93 -0.32 0.49 16 29 H 0.20 0.56 8.06 -52.48 -0.42 0.14 16 30 H 0.18 1.01 7.49 -52.48 -0.39 0.62 16 31 H 0.43 2.99 7.74 -34.47 -0.27 2.72 16 32 H 0.14 2.28 7.41 -51.92 -0.38 1.90 16 33 H 0.13 1.96 8.14 -51.93 -0.42 1.54 16 34 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 35 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -37.19 337.17 -7.77 -44.96 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -3.41 Total: -1.13 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -1.50 Total: -17.69 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.71 Total: -38.95 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -3.43 Total: -47.94 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 16 Polarization: 39.99 SS G_CDS: -0.55 Total: 39.44 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.19 -7.77 -44.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.271 kcal (2) G-P(sol) polarization free energy of solvation -37.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds