Wall clock time and date at job start Tue Mar 31 2020 17:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35533 * 125.67932 * 2 1 4 4 C 1.35450 * 108.86873 * 179.97438 * 3 2 1 5 5 N 1.48014 * 126.06382 * 180.02562 * 4 3 2 6 6 O 1.21801 * 120.00179 * 359.97438 * 5 4 3 7 7 O 1.21798 * 119.99988 * 179.97438 * 5 4 3 8 8 C 1.39834 * 107.86606 * 359.97438 * 4 3 2 9 9 C 1.37649 * 125.67293 * 179.69791 * 2 1 3 10 10 C 1.46677 * 126.23884 * 0.03563 * 9 2 1 11 11 O 1.21695 * 119.99609 * 5.55918 * 10 9 2 12 12 N 1.34777 * 120.00333 * 185.56554 * 10 9 2 13 13 S 1.65605 * 120.00029 * 185.09485 * 12 10 9 14 14 O 1.42098 * 104.27548 * 181.06857 * 13 12 10 15 15 O 1.42099 * 104.27642 * 308.92331 * 13 12 10 16 16 C 1.81394 * 104.44991 * 64.99751 * 13 12 10 17 17 C 1.52996 * 109.47329 * 180.02562 * 16 13 12 18 18 C 1.50699 * 109.47542 * 179.97438 * 17 16 13 19 19 H 1.07996 * 119.99655 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00356 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00001 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47308 * 90.00242 * 22 20 18 24 24 H 1.48499 * 109.47437 * 210.00790 * 22 20 18 25 25 H 1.48502 * 109.47132 * 330.00325 * 22 20 18 26 26 H 1.08996 * 109.47635 * 86.08703 * 1 2 3 27 27 H 1.09000 * 109.47138 * 326.08918 * 1 2 3 28 28 H 1.09001 * 109.47085 * 206.09388 * 1 2 3 29 29 H 1.08003 * 125.56295 * 359.97438 * 3 2 1 30 30 H 1.08003 * 126.45519 * 180.02562 * 8 4 3 31 31 H 0.96996 * 119.99843 * 5.09114 * 12 10 9 32 32 H 1.09004 * 109.46987 * 300.00184 * 16 13 12 33 33 H 1.08996 * 109.47590 * 59.99764 * 16 13 12 34 34 H 1.09004 * 109.47211 * 300.00016 * 17 16 13 35 35 H 1.09004 * 109.47227 * 59.99576 * 17 16 13 36 36 H 0.96995 * 120.00679 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 0.0006 5 7 4.7322 1.6026 0.0013 6 8 4.5812 2.8112 0.0010 7 8 5.8544 1.1291 0.0022 8 6 3.5779 -0.6889 0.0015 9 6 2.2677 -1.1182 0.0059 10 6 1.8123 -2.5125 0.0125 11 8 0.6263 -2.7656 -0.0889 12 7 2.7073 -3.5132 0.1311 13 16 2.2090 -5.0880 0.0121 14 8 3.3944 -5.8464 0.2092 15 8 1.1204 -5.1808 0.9206 16 6 1.6265 -5.2505 -1.6981 17 6 1.1333 -6.6792 -1.9354 18 6 0.6488 -6.8140 -3.3560 19 1 0.6882 -5.9654 -4.0227 20 6 0.1541 -8.0205 -3.8041 21 7 -0.2683 -8.1383 -5.0439 22 14 0.0852 -9.4881 -2.6505 23 1 -1.2194 -9.4996 -1.9414 24 1 0.2339 -10.7409 -3.4339 25 1 1.1866 -9.3907 -1.6592 26 1 -0.3634 0.0701 -1.0252 27 1 -0.3633 0.8529 0.5733 28 1 -0.3633 -0.9229 0.4520 29 1 1.9082 2.1236 -0.0004 30 1 4.4582 -1.3145 0.0026 31 1 3.6432 -3.3110 0.2861 32 1 0.8089 -4.5507 -1.8714 33 1 2.4449 -5.0297 -2.3833 34 1 1.9506 -7.3792 -1.7619 35 1 0.3147 -6.8995 -1.2502 36 1 -0.6166 -8.9869 -5.3591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776116142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:00 Heat of formation + Delta-G solvation = -87.084470 kcal Electronic energy + Delta-G solvation = -25801.510375 eV Core-core repulsion = 21609.681094 eV Total energy + Delta-G solvation = -4191.829281 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.58258 -42.57898 -40.85712 -38.38564 -37.53087 -37.33273 -36.15000 -35.92734 -34.43880 -33.54451 -31.48021 -28.93186 -27.99440 -26.59263 -25.15167 -23.27635 -22.49811 -21.83477 -20.94648 -20.18144 -19.55999 -19.46855 -18.64236 -18.54396 -18.39671 -17.55466 -17.26392 -16.95376 -16.71421 -16.43491 -16.08533 -15.86554 -15.35637 -15.06215 -14.85677 -14.26740 -13.97470 -13.85071 -13.62775 -13.51091 -13.44815 -13.33834 -13.13631 -13.06749 -12.65739 -12.41455 -12.33445 -12.22958 -12.20758 -11.99276 -11.80589 -11.72218 -11.26979 -10.86212 -10.67191 -10.12014 -8.38173 -6.44887 -1.17577 -0.81675 -0.30295 0.30023 0.96714 1.05658 1.32588 1.34091 1.43686 1.52383 1.56781 2.28509 2.42092 2.73048 2.95897 3.02665 3.23195 3.51112 3.61559 3.67898 3.83813 3.94245 4.11386 4.26343 4.30272 4.49373 4.60454 4.68649 4.99762 5.01193 5.06519 5.30851 5.42445 5.43673 5.49160 6.07836 6.13713 6.59256 6.61141 7.19605 8.77353 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.002860 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.198638 B = 9788.569160 C = 9987.890595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.383 5.383 3 C 0.153 3.847 4 C -0.156 4.156 5 N 0.067 4.933 6 O -0.174 6.174 7 O -0.197 6.197 8 C -0.061 4.061 9 C -0.056 4.056 10 C 0.617 3.383 11 O -0.513 6.513 12 N -1.030 6.030 13 S 2.605 3.395 14 O -0.957 6.957 15 O -0.962 6.962 16 C -0.578 4.578 17 C -0.016 4.016 18 C -0.529 4.529 19 H 0.048 0.952 20 C 0.014 3.986 21 N -0.940 5.940 22 Si 0.926 3.074 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.244 1.244 26 H 0.105 0.895 27 H 0.136 0.864 28 H 0.096 0.904 29 H 0.242 0.758 30 H 0.194 0.806 31 H 0.451 0.549 32 H 0.137 0.863 33 H 0.152 0.848 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 20.615 12.810 24.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.054 5.054 3 C 0.006 3.994 4 C -0.248 4.248 5 N 0.580 4.420 6 O -0.389 6.389 7 O -0.405 6.405 8 C -0.086 4.086 9 C -0.170 4.170 10 C 0.405 3.595 11 O -0.388 6.388 12 N -0.796 5.796 13 S 2.703 3.297 14 O -0.947 6.947 15 O -0.952 6.952 16 C -0.711 4.711 17 C -0.055 4.055 18 C -0.568 4.568 19 H 0.067 0.933 20 C -0.185 4.185 21 N -0.579 5.579 22 Si 0.748 3.252 23 H -0.187 1.187 24 H -0.200 1.200 25 H -0.167 1.167 26 H 0.123 0.877 27 H 0.154 0.846 28 H 0.115 0.885 29 H 0.258 0.742 30 H 0.211 0.789 31 H 0.291 0.709 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.856 19.176 13.344 23.536 hybrid contribution 0.560 -0.243 -0.620 0.869 sum 3.415 18.934 12.724 23.066 Atomic orbital electron populations 1.22957 0.71548 1.07777 1.06845 1.44357 1.09242 1.03571 1.48259 1.22441 0.86874 0.94724 0.95331 1.20205 0.86065 0.90922 1.27579 1.42782 1.01837 1.00958 0.96418 1.94523 1.92979 0.97167 1.54205 1.94573 1.10291 1.79919 1.55691 1.21550 0.96760 0.92377 0.97910 1.19624 0.89689 0.87611 1.20036 1.16797 0.84657 0.84393 0.73614 1.91045 1.15898 1.84575 1.47238 1.54698 1.21286 1.25139 1.78436 1.05404 0.73914 0.72154 0.78254 1.93606 1.47640 1.67357 1.86128 1.93580 1.56301 1.84126 1.61221 1.30173 1.13194 1.07134 1.20557 1.19393 0.97505 0.90563 0.98041 1.21121 1.42139 0.97785 0.95764 0.93346 1.25881 0.94091 1.01888 0.96621 1.70000 1.43233 1.27098 1.17613 0.86016 0.80502 0.78865 0.79822 1.18718 1.19952 1.16703 0.87667 0.84625 0.88495 0.74201 0.78874 0.70857 0.84511 0.83039 0.93980 0.94917 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.33 10.64 127.77 1.36 1.69 16 2 N -0.38 -4.21 3.16 -534.32 -1.69 -5.90 16 3 C 0.15 1.34 11.06 83.48 0.92 2.26 16 4 C -0.16 -2.33 7.11 36.12 0.26 -2.08 16 5 N 0.07 1.37 4.45 -47.08 -0.21 1.16 16 6 O -0.17 -3.66 19.02 18.89 0.36 -3.30 16 7 O -0.20 -4.68 19.05 18.89 0.36 -4.32 16 8 C -0.06 -0.84 10.07 22.57 0.23 -0.61 16 9 C -0.06 -0.88 6.88 40.35 0.28 -0.60 16 10 C 0.62 13.01 7.51 86.45 0.65 13.66 16 11 O -0.51 -13.97 12.89 13.19 0.17 -13.80 16 12 N -1.03 -20.31 5.58 -176.39 -0.98 -21.29 16 13 S 2.60 77.74 5.12 -56.49 -0.29 77.45 16 14 O -0.96 -31.20 18.08 -127.65 -2.31 -33.51 16 15 O -0.96 -35.39 16.92 -120.37 -2.04 -37.43 16 16 C -0.58 -19.72 5.84 71.98 0.42 -19.30 16 17 C -0.02 -0.71 4.05 29.85 0.12 -0.59 16 18 C -0.53 -29.25 9.66 25.60 0.25 -29.00 16 19 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 20 C 0.01 0.79 5.47 84.66 0.46 1.26 16 21 N -0.94 -57.03 13.96 21.45 0.30 -56.73 16 22 Si 0.93 42.66 27.47 68.60 1.88 44.54 16 23 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.10 1.20 6.21 -2.39 -0.01 1.19 16 29 H 0.24 0.13 8.06 -2.91 -0.02 0.10 16 30 H 0.19 1.78 7.49 -2.91 -0.02 1.76 16 31 H 0.45 5.21 7.74 -96.75 -0.75 4.46 16 32 H 0.14 4.61 7.41 -2.39 -0.02 4.59 16 33 H 0.15 4.41 8.14 -2.39 -0.02 4.39 16 34 H 0.04 1.82 7.20 -2.39 -0.02 1.81 16 35 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -82.07 337.17 0.85 -81.22 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 0.35 Total: 5.23 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 4.95 Total: -33.32 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.58 Total: -82.76 kcal Atomic # 8 Polarization: -88.91 SS G_CDS: -3.46 Total: -92.36 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Atomic # 16 Polarization: 77.74 SS G_CDS: -0.29 Total: 77.45 kcal Total: -82.07 0.85 -81.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.868 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds