Wall clock time and date at job start Tue Mar 31 2020 16:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48503 * 109.47214 * 274.98741 * 3 2 1 5 5 H 1.48498 * 109.47081 * 34.98377 * 3 2 1 6 6 H 1.48498 * 109.47269 * 154.98863 * 3 2 1 7 7 C 1.37878 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99496 * 189.55417 * 7 2 1 9 9 C 1.50693 * 120.00002 * 9.55750 * 7 2 1 10 10 C 1.53126 * 109.52161 * 185.42815 * 9 7 2 11 11 C 1.53036 * 109.27951 * 182.37892 * 10 9 7 12 12 N 1.46847 * 109.52353 * 59.17622 * 11 10 9 13 13 C 1.46903 * 110.99906 * 174.16265 * 12 11 10 14 14 N 1.46496 * 109.47183 * 155.00558 * 13 12 11 15 15 N 1.28371 * 119.13878 * 285.01803 * 14 13 12 16 16 C 1.30376 * 122.49319 * 179.97438 * 15 14 13 17 17 C 1.40607 * 120.43817 * 0.02562 * 16 15 14 18 18 Cl 1.73595 * 120.86532 * 179.97438 * 17 16 15 19 19 C 1.36873 * 118.26788 * 359.97438 * 17 16 15 20 20 Cl 1.73605 * 121.11614 * 180.02562 * 19 17 16 21 21 C 1.34665 * 119.14578 * 104.99576 * 14 13 12 22 22 O 1.22080 * 120.33902 * 359.75122 * 21 14 13 23 23 C 1.46839 * 111.20120 * 298.26026 * 12 11 10 24 24 C 1.53044 * 109.52523 * 61.73993 * 23 12 11 25 25 H 0.96999 * 119.99713 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.52496 * 305.55718 * 9 7 2 27 27 H 1.08993 * 109.50176 * 62.43780 * 10 9 7 28 28 H 1.08998 * 109.50303 * 302.32024 * 10 9 7 29 29 H 1.09001 * 109.46010 * 299.16795 * 11 10 9 30 30 H 1.09000 * 109.45547 * 179.19426 * 11 10 9 31 31 H 1.08998 * 109.46931 * 34.99897 * 13 12 11 32 32 H 1.09007 * 109.46638 * 275.00031 * 13 12 11 33 33 H 1.07997 * 119.77761 * 180.02562 * 16 15 14 34 34 H 1.09004 * 109.46730 * 181.75831 * 23 12 11 35 35 H 1.09007 * 109.46581 * 301.72687 * 23 12 11 36 36 H 1.08996 * 109.50313 * 180.88178 * 24 23 12 37 37 H 1.08999 * 109.49992 * 60.76316 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1073 -1.3948 5 1 1.5033 2.6199 0.8027 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2004 0.1558 9 6 1.2667 -2.4901 -0.2156 10 6 2.2322 -3.6648 -0.0347 11 6 1.4918 -4.9749 -0.3135 12 7 0.9640 -4.9583 -1.6837 13 6 0.3669 -6.2541 -2.0335 14 7 -0.6345 -6.0623 -3.0855 15 7 -1.7701 -5.5469 -2.7810 16 6 -2.7078 -5.3465 -3.6644 17 6 -2.5041 -5.6960 -5.0111 18 17 -3.7452 -5.4347 -6.1964 19 6 -1.3019 -6.2475 -5.3630 20 17 -0.9712 -6.7057 -7.0045 21 6 -0.3396 -6.4308 -4.3467 22 8 0.7503 -6.9141 -4.6091 23 6 -0.0014 -3.8672 -1.8677 24 6 0.6944 -2.5240 -1.6353 25 1 -0.4850 0.8401 -0.0004 26 1 0.4544 -2.5717 0.5066 27 1 2.6103 -3.6710 0.9875 28 1 3.0647 -3.5621 -0.7307 29 1 0.6679 -5.0835 0.3918 30 1 2.1802 -5.8123 -0.1995 31 1 -0.1094 -6.6844 -1.1525 32 1 1.1453 -6.9280 -2.3914 33 1 -3.6471 -4.9093 -3.3598 34 1 -0.3977 -3.9002 -2.8826 35 1 -0.8184 -3.9810 -1.1551 36 1 -0.0261 -1.7152 -1.7567 37 1 1.5027 -2.4034 -2.3566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781571753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:00 Heat of formation + Delta-G solvation = 22.300082 kcal Electronic energy + Delta-G solvation = -24196.198904 eV Core-core repulsion = 20447.778352 eV Total energy + Delta-G solvation = -3748.420552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.53410 -39.86149 -39.25515 -38.47602 -37.82428 -36.26877 -34.78570 -33.04105 -32.33891 -31.57689 -28.82071 -26.98283 -25.81556 -24.88473 -23.85332 -23.05935 -20.48790 -20.13799 -19.17739 -18.57025 -18.22889 -18.15934 -16.91753 -16.65225 -16.15902 -15.80243 -15.45298 -15.42463 -14.91099 -14.70621 -14.59388 -14.49473 -14.00918 -13.94492 -13.67314 -13.30466 -13.04818 -12.94991 -12.87386 -12.66239 -12.33460 -12.31510 -12.18397 -12.09375 -11.93491 -11.41487 -11.26215 -11.08189 -10.74667 -10.71671 -10.41163 -9.89992 -9.28630 -8.12198 -6.19206 -1.14359 0.22597 0.28299 0.46568 1.07619 1.39691 1.42346 1.51281 1.84777 2.44042 2.65248 2.85422 3.18169 3.26525 3.44026 3.80905 4.02420 4.09585 4.16797 4.23613 4.31667 4.46647 4.53064 4.65939 4.72701 4.81153 4.94949 5.04174 5.18163 5.27222 5.44209 5.62295 5.87629 5.91105 6.05776 6.08476 6.18310 6.40425 6.78532 6.92007 7.47149 8.96168 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.003356 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.426915 B = 8341.184785 C = 9104.746682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 0.944 3.056 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.100 4.100 11 C 0.069 3.931 12 N -0.557 5.557 13 C 0.282 3.718 14 N -0.344 5.344 15 N -0.200 5.200 16 C 0.059 3.941 17 C 0.032 3.968 18 Cl 0.013 6.987 19 C -0.135 4.135 20 Cl 0.008 6.992 21 C 0.495 3.505 22 O -0.531 6.531 23 C 0.081 3.919 24 C -0.089 4.089 25 H 0.260 0.740 26 H 0.002 0.998 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.242 0.758 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 -15.181 -9.312 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.181 4.181 3 Si 0.770 3.230 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.138 4.138 11 C -0.058 4.058 12 N -0.285 5.285 13 C 0.074 3.926 14 N -0.165 5.165 15 N -0.022 5.022 16 C -0.132 4.132 17 C -0.003 4.003 18 Cl 0.043 6.957 19 C -0.175 4.175 20 Cl 0.037 6.963 21 C 0.291 3.709 22 O -0.409 6.409 23 C -0.047 4.047 24 C -0.128 4.128 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.258 0.742 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.687 -15.229 -9.091 19.749 hybrid contribution -0.376 1.041 -0.724 1.323 sum -9.062 -14.187 -9.815 19.487 Atomic orbital electron populations 1.70063 1.07067 1.27139 1.51166 1.25651 0.95540 1.02044 0.94823 0.85758 0.79107 0.80164 0.77949 1.20551 1.20830 1.19328 1.21556 0.94103 0.92704 1.48937 0.93251 1.18648 0.93815 0.92671 0.92224 1.21540 0.98285 0.93756 1.00183 1.22133 0.98706 0.99197 0.85775 1.62423 1.36284 1.02356 1.27428 1.22904 0.88238 0.93268 0.88203 1.46882 1.11612 1.48382 1.09610 1.71194 0.92597 1.05873 1.32546 1.24190 1.00437 1.02832 0.85724 1.22522 0.89947 0.94436 0.93351 1.98459 1.49219 1.93523 1.54504 1.22223 0.95194 1.09420 0.90667 1.98403 1.95394 1.90216 1.12280 1.17479 0.88748 0.81709 0.82934 1.91028 1.23483 1.45701 1.80658 1.21974 0.92842 0.91024 0.98841 1.21393 0.98248 0.94290 0.98861 0.93058 0.98002 0.91957 0.93322 0.94063 0.88217 0.88359 0.85429 0.74229 0.93458 0.94093 0.93677 0.95521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.47 12.20 21.45 0.26 -52.21 16 2 C 0.02 1.02 5.23 84.65 0.44 1.46 16 3 Si 0.94 43.69 29.55 68.60 2.03 45.72 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.53 -29.45 8.48 25.60 0.22 -29.23 16 8 H 0.05 2.70 7.77 -2.91 -0.02 2.68 16 9 C 0.05 2.21 2.03 -11.46 -0.02 2.18 16 10 C -0.10 -3.95 5.32 30.65 0.16 -3.79 16 11 C 0.07 2.14 5.29 86.33 0.46 2.60 16 12 N -0.56 -18.27 4.91 -908.70 -4.46 -22.73 16 13 C 0.28 7.33 6.32 170.81 1.08 8.41 16 14 N -0.34 -9.12 2.40 -481.96 -1.16 -10.28 16 15 N -0.20 -4.66 8.02 -56.78 -0.46 -5.11 16 16 C 0.06 1.02 11.15 85.49 0.95 1.97 16 17 C 0.03 0.60 6.37 22.53 0.14 0.75 16 18 Cl 0.01 0.20 28.16 -2.72 -0.08 0.12 16 19 C -0.13 -3.24 6.40 22.66 0.15 -3.10 16 20 Cl 0.01 0.18 27.80 -2.72 -0.08 0.11 16 21 C 0.50 14.29 7.47 84.97 0.63 14.93 16 22 O -0.53 -18.28 16.02 -5.58 -0.09 -18.37 16 23 C 0.08 3.02 4.15 86.33 0.36 3.38 16 24 C -0.09 -4.20 5.19 30.65 0.16 -4.04 16 25 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 2.45 8.12 -2.39 -0.02 2.43 16 31 H 0.10 2.06 7.86 -2.39 -0.02 2.04 16 32 H 0.13 3.25 6.98 -2.38 -0.02 3.24 16 33 H 0.24 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.05 1.72 6.08 -2.38 -0.01 1.70 16 35 H 0.04 1.53 7.76 -2.38 -0.02 1.51 16 36 H 0.04 2.36 7.00 -2.39 -0.02 2.35 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -66.17 332.38 1.81 -64.36 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.10 Total: 2.87 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 4.73 Total: -4.48 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -5.81 Total: -90.33 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.09 Total: -18.37 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.15 Total: 0.23 kcal Total: -66.17 1.81 -64.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781571753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.662 kcal (2) G-P(sol) polarization free energy of solvation -66.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds