Wall clock time and date at job start Tue Mar 31 2020 16:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47299 * 269.99911 * 3 2 1 5 5 H 1.48502 * 109.46903 * 30.00052 * 3 2 1 6 6 H 1.48501 * 109.46961 * 150.00130 * 3 2 1 7 7 C 1.37871 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99732 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00212 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99920 * 180.02562 * 10 9 7 12 12 O 1.21358 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.49321 * 119.99807 * 179.97438 * 11 10 9 14 14 O 1.21398 * 119.99609 * 359.97438 * 13 11 10 15 15 N 1.34772 * 120.00009 * 179.97438 * 13 11 10 16 16 C 1.39924 * 120.00106 * 184.67450 * 15 13 11 17 17 C 1.39514 * 120.40502 * 325.00914 * 16 15 13 18 18 C 1.38183 * 118.44970 * 180.02562 * 17 16 15 19 19 C 1.39206 * 119.17397 * 0.02562 * 18 17 16 20 20 S 1.76201 * 119.63030 * 180.02562 * 19 18 17 21 21 C 1.81397 * 102.99938 * 179.97438 * 20 19 18 22 22 F 1.39903 * 109.47212 * 299.99887 * 21 20 19 23 23 F 1.39897 * 109.47415 * 60.00020 * 21 20 19 24 24 N 1.32434 * 120.74282 * 359.97438 * 19 18 17 25 25 C 1.31931 * 121.68656 * 359.97438 * 24 19 18 26 26 H 0.97001 * 120.00254 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46994 * 60.00012 * 9 7 2 28 28 H 1.08999 * 109.47165 * 300.00327 * 9 7 2 29 29 H 0.96998 * 119.99414 * 0.02562 * 10 9 7 30 30 H 0.97003 * 120.00230 * 4.67962 * 15 13 11 31 31 H 1.08004 * 120.77232 * 0.02562 * 17 16 15 32 32 H 1.07998 * 120.41540 * 180.02562 * 18 17 16 33 33 H 1.08997 * 109.47175 * 180.02562 * 21 20 19 34 34 H 1.08004 * 119.62038 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3250 -2.8214 0.0001 12 8 6.1136 -1.8990 -0.0004 13 6 5.8227 -4.2292 0.0008 14 8 5.0338 -5.1519 0.0018 15 7 7.1478 -4.4755 0.0004 16 6 7.6149 -5.7908 -0.0977 17 6 6.9116 -6.8364 0.5010 18 6 7.4097 -8.1196 0.3792 19 6 8.5890 -8.3251 -0.3314 20 16 9.2346 -9.9564 -0.4948 21 6 10.7378 -9.7037 -1.4781 22 9 10.3989 -9.1337 -2.7100 23 9 11.6060 -8.8482 -0.7915 24 7 9.2305 -7.3084 -0.8870 25 6 8.7829 -6.0710 -0.7914 26 1 -0.4850 0.8400 0.0004 27 1 3.8751 -0.6795 0.8895 28 1 3.8745 -0.6807 -0.8905 29 1 3.3695 -3.3124 0.0001 30 1 7.7777 -3.7409 0.0681 31 1 5.9991 -6.6473 1.0469 32 1 6.8907 -8.9526 0.8298 33 1 11.2285 -10.6627 -1.6446 34 1 9.3328 -5.2669 -1.2579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787600239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:41 Heat of formation + Delta-G solvation = -141.212485 kcal Electronic energy + Delta-G solvation = -24306.288795 eV Core-core repulsion = 20001.024832 eV Total energy + Delta-G solvation = -4305.263963 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.06937 -48.18596 -42.34299 -41.02357 -39.61841 -36.93037 -36.05061 -34.44284 -33.47450 -31.55214 -30.31102 -27.95715 -26.77421 -25.18666 -24.54706 -23.26396 -21.62146 -20.42640 -19.96239 -18.90709 -18.69205 -18.63567 -18.38802 -18.07195 -17.50690 -17.38858 -17.04968 -16.75738 -16.02061 -15.72881 -15.53129 -15.29588 -15.04103 -14.94142 -14.81827 -14.50147 -14.46181 -14.31110 -14.09604 -13.86641 -13.15059 -12.90917 -12.73875 -12.69723 -12.43167 -11.92223 -11.70361 -11.60010 -11.21656 -11.01928 -10.93619 -10.69039 -10.38152 -10.19790 -8.86557 -8.39947 -6.49534 -0.50498 -0.23790 0.03349 0.29505 0.42488 1.12356 1.36645 1.38772 1.49673 1.97115 2.28512 2.45942 2.52887 2.90991 2.95149 3.26972 3.36670 3.45602 3.54319 3.64335 3.78402 3.83965 4.43696 4.52288 4.64452 4.81292 4.89065 4.95388 5.11713 5.23278 5.37045 5.70542 6.01227 6.36827 6.43734 6.49819 6.62056 6.86000 7.16954 8.74844 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.036588 B = 0.002040 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.098819 B =13722.993430 C =14125.949388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.025 3.975 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.250 1.250 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.229 3.771 10 N -0.670 5.670 11 C 0.501 3.499 12 O -0.549 6.549 13 C 0.523 3.477 14 O -0.514 6.514 15 N -0.626 5.626 16 C 0.090 3.910 17 C -0.069 4.069 18 C -0.117 4.117 19 C 0.079 3.921 20 S -0.052 6.052 21 C 0.282 3.718 22 F -0.191 7.191 23 F -0.189 7.189 24 N -0.475 5.475 25 C 0.105 3.895 26 H 0.273 0.727 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.414 0.586 30 H 0.437 0.563 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.201 0.799 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.597 -20.803 -0.425 31.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.174 1.174 7 C -0.593 4.593 8 H 0.073 0.927 9 C 0.106 3.894 10 N -0.320 5.320 11 C 0.280 3.720 12 O -0.428 6.428 13 C 0.305 3.695 14 O -0.388 6.388 15 N -0.274 5.274 16 C -0.008 4.008 17 C -0.098 4.098 18 C -0.143 4.143 19 C -0.170 4.170 20 S 0.182 5.818 21 C 0.120 3.880 22 F -0.173 7.173 23 F -0.171 7.171 24 N -0.187 5.187 25 C -0.058 4.058 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.251 0.749 30 H 0.278 0.722 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.217 0.783 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 23.833 -21.856 -0.543 32.342 hybrid contribution -0.634 2.401 -0.043 2.484 sum 23.199 -19.454 -0.586 30.282 Atomic orbital electron populations 1.69991 1.07964 1.28796 1.50211 1.25672 0.95603 1.02988 0.93333 0.85787 0.79473 0.78618 0.79606 1.18835 1.20142 1.17374 1.21248 0.89937 0.94638 1.53428 0.92710 1.19390 0.93578 0.79172 0.97258 1.45957 1.05915 1.11235 1.68896 1.19953 0.83754 0.89025 0.79221 1.90730 1.55459 1.45960 1.50654 1.20141 0.83206 0.89311 0.76886 1.90766 1.55671 1.45528 1.46836 1.42919 1.06822 1.07790 1.69891 1.18868 0.97262 0.84838 0.99874 1.21803 1.00145 0.91531 0.96362 1.21785 0.94797 0.98327 0.99391 1.22999 0.96330 0.97636 0.99996 1.86180 1.26188 1.03106 1.66277 1.24623 0.89929 0.94955 0.78532 1.93106 1.92468 1.87627 1.44063 1.93101 1.70507 1.74221 1.79262 1.68097 1.31763 0.99524 1.19326 1.22882 0.93747 0.94209 0.95003 0.91764 0.95022 0.95282 0.74918 0.72241 0.82764 0.81411 0.78290 0.79392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.96 21.44 0.30 -54.55 16 2 C 0.02 1.35 5.47 84.65 0.46 1.81 16 3 Si 0.94 41.78 27.47 68.60 1.88 43.66 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.55 -29.85 9.83 25.60 0.25 -29.60 16 8 H 0.05 3.18 7.84 -2.91 -0.02 3.15 16 9 C 0.23 10.48 4.50 85.63 0.38 10.87 16 10 N -0.67 -26.17 5.54 -468.27 -2.60 -28.77 16 11 C 0.50 17.27 7.88 87.23 0.69 17.95 16 12 O -0.55 -20.51 16.48 -3.27 -0.05 -20.56 16 13 C 0.52 14.87 7.74 87.23 0.68 15.54 16 14 O -0.51 -16.08 13.95 -3.40 -0.05 -16.13 16 15 N -0.63 -13.62 5.34 -304.42 -1.62 -15.24 16 16 C 0.09 1.90 6.32 38.27 0.24 2.15 16 17 C -0.07 -1.48 8.80 22.56 0.20 -1.28 16 18 C -0.12 -2.16 9.83 22.49 0.22 -1.94 16 19 C 0.08 1.57 6.95 84.83 0.59 2.16 16 20 S -0.05 -0.73 22.15 -56.49 -1.25 -1.98 16 21 C 0.28 3.45 5.49 113.37 0.62 4.07 16 22 F -0.19 -3.44 16.75 44.97 0.75 -2.69 16 23 F -0.19 -3.26 16.76 44.97 0.75 -2.50 16 24 N -0.48 -10.36 8.43 -191.71 -1.62 -11.97 16 25 C 0.10 2.03 11.11 84.79 0.94 2.97 16 26 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 27 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 28 H 0.03 1.34 7.57 -2.39 -0.02 1.33 16 29 H 0.41 15.60 7.79 -92.71 -0.72 14.88 16 30 H 0.44 7.78 8.30 -92.71 -0.77 7.01 16 31 H 0.15 3.48 6.31 -2.91 -0.02 3.47 16 32 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.20 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -68.52 329.08 1.44 -67.08 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -0.34 Total: 18.94 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 5.28 Total: 24.71 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -5.54 Total: -110.53 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.10 Total: -36.69 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 1.51 Total: -5.19 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.66 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -1.25 Total: -1.98 kcal Total: -68.52 1.44 -67.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787600239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.131 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds