Wall clock time and date at job start Tue Mar 31 2020 16:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47586 * 290.86640 * 3 2 1 5 5 C 1.36944 * 119.99889 * 273.28542 * 4 3 2 6 6 H 1.07995 * 119.99895 * 186.81226 * 5 4 3 7 7 C 1.38811 * 120.00209 * 6.81247 * 5 4 3 8 8 N 1.31622 * 119.99619 * 25.22405 * 7 5 4 9 9 Si 1.86797 * 120.00187 * 205.22482 * 7 5 4 10 10 H 1.48503 * 109.47152 * 59.99476 * 9 7 5 11 11 H 1.48495 * 109.47319 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46875 * 300.00201 * 9 7 5 13 13 S 1.65598 * 120.00191 * 93.28093 * 4 3 2 14 14 O 1.42092 * 106.40199 * 156.46436 * 13 4 3 15 15 O 1.42099 * 106.39959 * 23.54219 * 13 4 3 16 16 C 1.76201 * 107.21709 * 270.00388 * 13 4 3 17 17 C 1.38461 * 119.96813 * 90.00133 * 16 13 4 18 18 F 1.35098 * 119.98741 * 359.97438 * 17 16 13 19 19 C 1.38380 * 120.02616 * 179.97438 * 17 16 13 20 20 C 1.38700 * 119.97185 * 0.02562 * 19 17 16 21 21 O 1.35900 * 120.02852 * 180.02562 * 20 19 17 22 22 C 1.42905 * 116.99657 * 179.97438 * 21 20 19 23 23 C 1.38705 * 119.94182 * 0.27218 * 20 19 17 24 24 C 1.38385 * 119.96870 * 359.44733 * 23 20 19 25 25 F 1.35098 * 119.98573 * 180.29420 * 24 23 20 26 26 H 4.40640 * 5.51450 * 179.97438 * 4 1 2 27 27 H 1.09005 * 109.47063 * 170.87029 * 3 2 1 28 28 H 1.08997 * 109.47797 * 50.86830 * 3 2 1 29 29 H 0.96999 * 119.99541 * 180.02562 * 8 7 5 30 30 H 1.08006 * 120.01026 * 180.02562 * 19 17 16 31 31 H 1.09002 * 109.46419 * 179.97438 * 22 21 20 32 32 H 1.08995 * 109.47407 * 299.99974 * 22 21 20 33 33 H 1.09004 * 109.46535 * 60.00616 * 22 21 20 34 34 H 1.07999 * 120.01771 * 179.70637 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4911 1.2906 5 6 3.2984 0.3774 2.3367 6 1 3.7610 0.0390 3.2520 7 6 2.8700 1.6926 2.2206 8 7 1.9048 1.9984 1.3795 9 14 3.6630 3.0283 3.2579 10 1 5.1148 3.0957 2.9527 11 1 3.0314 4.3361 2.9482 12 1 3.4739 2.7151 4.6971 13 16 3.4888 -2.0971 1.4845 14 8 4.4139 -2.1769 2.5601 15 8 3.7600 -2.6077 0.1865 16 6 2.0163 -2.8932 2.0346 17 6 1.1245 -3.4124 1.1115 18 9 1.3836 -3.3080 -0.2103 19 6 -0.0320 -4.0383 1.5422 20 6 -0.2980 -4.1449 2.8993 21 8 -1.4332 -4.7599 3.3236 22 6 -1.6420 -4.8339 4.7354 23 6 0.5932 -3.6189 3.8228 24 6 1.7519 -2.9986 3.3896 25 9 2.6230 -2.4913 4.2890 26 1 -1.0499 0.0001 0.0003 27 1 3.0088 1.0155 -0.1631 28 1 3.0097 -0.6477 -0.7971 29 1 1.6057 2.9175 1.2981 30 1 -0.7273 -4.4436 0.8219 31 1 -2.5823 -5.3471 4.9371 32 1 -0.8214 -5.3840 5.1957 33 1 -1.6820 -3.8266 5.1500 34 1 0.3850 -3.6970 4.8797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798491233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:01 Heat of formation + Delta-G solvation = -86.692824 kcal Electronic energy + Delta-G solvation = -27427.727589 eV Core-core repulsion = 23092.535025 eV Total energy + Delta-G solvation = -4335.192564 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.65602 -48.59232 -39.99705 -36.87892 -36.40147 -35.77187 -34.40665 -32.11528 -31.19728 -30.48598 -29.95287 -27.44566 -26.65306 -23.92108 -22.91196 -22.46758 -18.76259 -18.58230 -18.07898 -17.38530 -17.27276 -16.59992 -16.26424 -16.14557 -16.00909 -15.53591 -15.29187 -14.84322 -14.68448 -14.50830 -14.35945 -14.23500 -13.40537 -13.35300 -12.76368 -12.64724 -12.46822 -12.23736 -11.96694 -11.91348 -11.45663 -11.28987 -11.01952 -10.85021 -10.81326 -10.69715 -10.48009 -10.32736 -10.01350 -9.71432 -9.27572 -8.91095 -8.58074 -8.47445 -8.36591 -6.71231 -4.04033 1.02950 1.22610 1.64339 2.94975 3.04934 3.09292 3.16920 3.42715 3.74751 3.94215 4.14932 4.28706 4.50443 4.57012 4.61120 4.81297 4.88742 4.97435 4.99838 5.03055 5.25899 5.38528 5.54349 5.74839 5.78376 6.05112 6.09899 6.24128 6.33767 6.69352 6.73242 6.94688 7.08449 7.17211 7.20315 8.07826 8.44638 8.86584 8.89963 10.18952 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.005819 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.626863 B = 4810.916725 C = 5092.024226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.111 4.111 3 C 0.231 3.769 4 N -0.782 5.782 5 C -0.231 4.231 6 H 0.127 0.873 7 C 0.027 3.973 8 N -0.808 5.808 9 Si 0.935 3.065 10 H -0.264 1.264 11 H -0.280 1.280 12 H -0.267 1.267 13 S 2.505 3.495 14 O -0.973 6.973 15 O -0.986 6.986 16 C -0.770 4.770 17 C 0.256 3.744 18 F -0.103 7.103 19 C -0.227 4.227 20 C 0.208 3.792 21 O -0.308 6.308 22 C 0.023 3.977 23 C -0.284 4.284 24 C 0.258 3.742 25 F -0.104 7.104 26 H 0.196 0.804 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.280 0.720 30 H 0.147 0.853 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.650 -5.359 3.536 9.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.114 4.114 3 C 0.106 3.894 4 N -0.603 5.603 5 C -0.381 4.381 6 H 0.145 0.855 7 C -0.187 4.187 8 N -0.447 5.447 9 Si 0.759 3.241 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.191 1.191 13 S 2.601 3.399 14 O -0.962 6.962 15 O -0.976 6.976 16 C -0.845 4.845 17 C 0.235 3.765 18 F -0.081 7.081 19 C -0.247 4.247 20 C 0.161 3.839 21 O -0.221 6.221 22 C -0.072 4.072 23 C -0.305 4.305 24 C 0.237 3.763 25 F -0.082 7.082 26 H 0.213 0.787 27 H 0.135 0.865 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.165 0.835 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.097 -6.077 3.134 9.161 hybrid contribution -0.904 0.682 1.044 1.540 sum -7.001 -5.395 4.179 9.777 Atomic orbital electron populations 1.24179 0.95273 1.05777 1.03224 1.23331 0.94513 0.95984 0.97539 1.18569 0.84030 1.01916 0.84884 1.55787 1.70228 1.19582 1.14670 1.20334 1.29604 0.89007 0.99147 0.85547 1.25725 0.95133 0.99751 0.98079 1.70246 1.20552 1.20940 1.32920 0.85835 0.79940 0.78458 0.79869 1.18895 1.20473 1.19134 1.13372 0.78868 0.74228 0.73429 1.93374 1.61715 1.86161 1.54971 1.93370 1.85472 1.79738 1.38991 1.32333 1.31194 1.21915 0.99073 1.16238 0.91144 0.91506 0.77662 1.91646 1.93452 1.92942 1.30074 1.20215 0.99996 1.10356 0.94160 1.18226 0.84579 0.88980 0.92095 1.86083 1.37563 1.72801 1.25621 1.23165 1.02808 1.02475 0.78721 1.21136 0.97497 1.11082 1.00742 1.16315 0.85788 0.89300 0.84883 1.91650 1.67214 1.83455 1.65853 0.78687 0.86545 0.89704 0.90938 0.83506 0.87888 0.92187 0.92072 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.54 19.25 29.55 0.57 -4.97 16 2 C -0.11 -2.50 11.24 -37.13 -0.42 -2.92 16 3 C 0.23 5.21 5.45 -6.83 -0.04 5.18 16 4 N -0.78 -18.81 2.88 -62.78 -0.18 -18.99 16 5 C -0.23 -5.59 9.48 -15.06 -0.14 -5.73 16 6 H 0.13 3.08 7.22 -52.49 -0.38 2.70 16 7 C 0.03 0.62 4.92 -17.43 -0.09 0.53 16 8 N -0.81 -18.71 8.97 55.49 0.50 -18.21 16 9 Si 0.93 17.96 29.62 -169.99 -5.04 12.92 16 10 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 11 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 12 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 13 S 2.51 61.15 5.54 -107.50 -0.60 60.56 16 14 O -0.97 -25.45 14.97 -57.17 -0.86 -26.30 16 15 O -0.99 -25.06 14.76 -57.17 -0.84 -25.91 16 16 C -0.77 -17.04 5.99 -39.42 -0.24 -17.27 16 17 C 0.26 5.23 7.20 -39.45 -0.28 4.94 16 18 F -0.10 -2.19 15.33 2.25 0.03 -2.16 16 19 C -0.23 -3.92 9.96 -39.36 -0.39 -4.31 16 20 C 0.21 3.33 6.68 -39.24 -0.26 3.07 16 21 O -0.31 -4.11 10.50 -19.43 -0.20 -4.31 16 22 C 0.02 0.21 9.81 101.05 0.99 1.20 16 23 C -0.28 -4.73 9.01 -39.35 -0.35 -5.09 16 24 C 0.26 5.29 7.20 -39.45 -0.28 5.00 16 25 F -0.10 -2.23 15.33 2.25 0.03 -2.20 16 26 H 0.20 3.39 7.80 -54.10 -0.42 2.97 16 27 H 0.12 2.59 6.43 -51.93 -0.33 2.25 16 28 H 0.09 1.82 6.95 -51.93 -0.36 1.46 16 29 H 0.28 6.10 8.31 -40.82 -0.34 5.76 16 30 H 0.15 2.15 8.06 -52.48 -0.42 1.72 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 33 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 34 H 0.14 1.91 6.30 -52.49 -0.33 1.57 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -29.68 319.95 -5.86 -35.54 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -2.60 Total: 4.61 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -0.94 Total: -20.36 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.32 Total: -37.21 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -1.90 Total: -56.52 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.07 Total: -4.36 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.04 Total: 12.92 kcal Atomic # 16 Polarization: 61.15 SS G_CDS: -0.60 Total: 60.56 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.68 -5.86 -35.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798491233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.151 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds