Wall clock time and date at job start Tue Mar 31 2020 16:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47586 * 290.86640 * 3 2 1 5 5 C 1.36944 * 119.99889 * 273.28542 * 4 3 2 6 6 H 1.07995 * 119.99895 * 186.81226 * 5 4 3 7 7 C 1.38811 * 120.00209 * 6.81247 * 5 4 3 8 8 N 1.31622 * 119.99619 * 25.22405 * 7 5 4 9 9 Si 1.86797 * 120.00187 * 205.22482 * 7 5 4 10 10 H 1.48503 * 109.47152 * 59.99476 * 9 7 5 11 11 H 1.48495 * 109.47319 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46875 * 300.00201 * 9 7 5 13 13 S 1.65598 * 120.00191 * 93.28093 * 4 3 2 14 14 O 1.42092 * 106.40199 * 156.46436 * 13 4 3 15 15 O 1.42099 * 106.39959 * 23.54219 * 13 4 3 16 16 C 1.76201 * 107.21709 * 270.00388 * 13 4 3 17 17 C 1.38461 * 119.96813 * 90.00133 * 16 13 4 18 18 F 1.35098 * 119.98741 * 359.97438 * 17 16 13 19 19 C 1.38380 * 120.02616 * 179.97438 * 17 16 13 20 20 C 1.38700 * 119.97185 * 0.02562 * 19 17 16 21 21 O 1.35900 * 120.02852 * 180.02562 * 20 19 17 22 22 C 1.42905 * 116.99657 * 179.97438 * 21 20 19 23 23 C 1.38705 * 119.94182 * 0.27218 * 20 19 17 24 24 C 1.38385 * 119.96870 * 359.44733 * 23 20 19 25 25 F 1.35098 * 119.98573 * 180.29420 * 24 23 20 26 26 H 4.40640 * 5.51450 * 179.97438 * 4 1 2 27 27 H 1.09005 * 109.47063 * 170.87029 * 3 2 1 28 28 H 1.08997 * 109.47797 * 50.86830 * 3 2 1 29 29 H 0.96999 * 119.99541 * 180.02562 * 8 7 5 30 30 H 1.08006 * 120.01026 * 180.02562 * 19 17 16 31 31 H 1.09002 * 109.46419 * 179.97438 * 22 21 20 32 32 H 1.08995 * 109.47407 * 299.99974 * 22 21 20 33 33 H 1.09004 * 109.46535 * 60.00616 * 22 21 20 34 34 H 1.07999 * 120.01771 * 179.70637 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4911 1.2906 5 6 3.2984 0.3774 2.3367 6 1 3.7610 0.0390 3.2520 7 6 2.8700 1.6926 2.2206 8 7 1.9048 1.9984 1.3795 9 14 3.6630 3.0283 3.2579 10 1 5.1148 3.0957 2.9527 11 1 3.0314 4.3361 2.9482 12 1 3.4739 2.7151 4.6971 13 16 3.4888 -2.0971 1.4845 14 8 4.4139 -2.1769 2.5601 15 8 3.7600 -2.6077 0.1865 16 6 2.0163 -2.8932 2.0346 17 6 1.1245 -3.4124 1.1115 18 9 1.3836 -3.3080 -0.2103 19 6 -0.0320 -4.0383 1.5422 20 6 -0.2980 -4.1449 2.8993 21 8 -1.4332 -4.7599 3.3236 22 6 -1.6420 -4.8339 4.7354 23 6 0.5932 -3.6189 3.8228 24 6 1.7519 -2.9986 3.3896 25 9 2.6230 -2.4913 4.2890 26 1 -1.0499 0.0001 0.0003 27 1 3.0088 1.0155 -0.1631 28 1 3.0097 -0.6477 -0.7971 29 1 1.6057 2.9175 1.2981 30 1 -0.7273 -4.4436 0.8219 31 1 -2.5823 -5.3471 4.9371 32 1 -0.8214 -5.3840 5.1957 33 1 -1.6820 -3.8266 5.1500 34 1 0.3850 -3.6970 4.8797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798491233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:00 Heat of formation + Delta-G solvation = -105.682475 kcal Electronic energy + Delta-G solvation = -27428.551042 eV Core-core repulsion = 23092.535025 eV Total energy + Delta-G solvation = -4336.016017 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.23097 -50.16774 -41.19348 -38.18250 -38.16324 -37.71350 -36.36312 -33.86628 -32.93821 -31.83511 -31.35737 -28.41843 -28.34011 -25.71163 -24.34030 -23.84117 -20.46530 -20.06357 -19.75154 -18.96227 -18.80605 -18.36384 -17.94853 -17.47713 -17.31564 -16.98871 -16.58178 -16.44183 -16.41747 -16.09465 -15.87170 -15.60854 -15.21126 -15.04446 -14.31091 -14.22401 -13.78678 -13.61499 -13.37016 -13.32033 -13.10586 -12.70800 -12.65583 -12.58823 -12.46672 -12.31827 -12.11162 -11.97931 -11.75351 -11.41647 -10.98534 -10.61566 -10.16743 -10.01673 -9.81247 -8.45541 -5.87549 -0.46528 -0.21287 -0.13675 1.49405 1.55775 1.64460 1.85449 1.92602 2.11530 2.31201 2.45139 2.72515 2.82016 2.89775 3.16017 3.21182 3.35810 3.64443 3.91692 3.98934 4.11725 4.28744 4.34432 4.38779 4.50023 4.58513 4.68830 4.75376 4.83783 4.91531 5.18004 5.35274 5.35820 5.45859 6.03333 6.27469 6.63798 7.08302 7.20312 8.44709 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.005819 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.626863 B = 4810.916725 C = 5092.024226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.148 4.148 3 C 0.232 3.768 4 N -0.789 5.789 5 C -0.256 4.256 6 H 0.116 0.884 7 C 0.002 3.998 8 N -0.820 5.820 9 Si 0.994 3.006 10 H -0.264 1.264 11 H -0.268 1.268 12 H -0.265 1.265 13 S 2.506 3.494 14 O -1.002 7.002 15 O -1.008 7.008 16 C -0.801 4.801 17 C 0.235 3.765 18 F -0.116 7.116 19 C -0.220 4.220 20 C 0.225 3.775 21 O -0.305 6.305 22 C 0.007 3.993 23 C -0.270 4.270 24 C 0.234 3.766 25 F -0.118 7.118 26 H 0.229 0.771 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.286 0.714 30 H 0.175 0.825 31 H 0.136 0.864 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 -5.479 4.928 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.150 4.150 3 C 0.107 3.893 4 N -0.610 5.610 5 C -0.407 4.407 6 H 0.133 0.867 7 C -0.211 4.211 8 N -0.458 5.458 9 Si 0.815 3.185 10 H -0.189 1.189 11 H -0.193 1.193 12 H -0.190 1.190 13 S 2.607 3.393 14 O -0.992 6.992 15 O -0.998 6.998 16 C -0.880 4.880 17 C 0.214 3.786 18 F -0.094 7.094 19 C -0.240 4.240 20 C 0.177 3.823 21 O -0.217 6.217 22 C -0.086 4.086 23 C -0.289 4.289 24 C 0.213 3.787 25 F -0.096 7.096 26 H 0.246 0.754 27 H 0.132 0.868 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.192 0.808 31 H 0.154 0.846 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.701 -6.196 4.507 11.594 hybrid contribution -0.304 0.596 0.683 0.956 sum -9.005 -5.600 5.190 11.807 Atomic orbital electron populations 1.24962 0.96123 1.04152 1.01568 1.23486 0.94960 0.97498 0.99073 1.18525 0.84772 1.01588 0.84390 1.55725 1.70973 1.19204 1.15057 1.20435 1.31028 0.89888 0.99340 0.86656 1.26438 0.95078 1.00635 0.98935 1.70305 1.20718 1.21629 1.33116 0.84967 0.78988 0.76172 0.78347 1.18868 1.19254 1.18982 1.13177 0.79027 0.74520 0.72602 1.93313 1.63400 1.86747 1.55693 1.93316 1.86226 1.80338 1.39940 1.31962 1.31100 1.24408 1.00551 1.16454 0.92283 0.92815 0.77010 1.91606 1.93725 1.93247 1.30819 1.20480 0.98971 1.08928 0.95596 1.18246 0.84960 0.87566 0.91513 1.86126 1.35570 1.71462 1.28539 1.23638 1.05063 1.03784 0.76153 1.21450 0.95627 1.09009 1.02861 1.16633 0.87116 0.90716 0.84264 1.91608 1.68010 1.83968 1.66039 0.75418 0.86794 0.89778 0.90360 0.80782 0.84640 0.90865 0.91198 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.11 19.25 74.32 1.43 -8.68 16 2 C -0.15 -6.68 11.24 31.12 0.35 -6.33 16 3 C 0.23 10.82 5.45 84.57 0.46 11.28 16 4 N -0.79 -39.37 2.88 -352.52 -1.02 -40.39 16 5 C -0.26 -12.77 9.48 84.03 0.80 -11.97 16 6 H 0.12 5.87 7.22 -2.91 -0.02 5.85 16 7 C 0.00 0.09 4.92 84.86 0.42 0.51 16 8 N -0.82 -37.72 8.97 21.65 0.19 -37.52 16 9 Si 0.99 36.35 29.62 68.60 2.03 38.39 16 10 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 11 H -0.27 -9.25 7.11 99.48 0.71 -8.55 16 12 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 13 S 2.51 127.84 5.54 -56.49 -0.31 127.52 16 14 O -1.00 -55.03 14.97 -128.00 -1.92 -56.95 16 15 O -1.01 -53.75 14.76 -128.00 -1.89 -55.64 16 16 C -0.80 -36.14 5.99 22.37 0.13 -36.01 16 17 C 0.24 9.62 7.20 22.36 0.16 9.78 16 18 F -0.12 -5.02 15.33 44.97 0.69 -4.33 16 19 C -0.22 -7.13 9.96 22.41 0.22 -6.90 16 20 C 0.23 6.52 6.68 22.49 0.15 6.67 16 21 O -0.31 -6.80 10.50 -92.43 -0.97 -7.77 16 22 C 0.01 0.09 9.81 113.37 1.11 1.21 16 23 C -0.27 -8.33 9.01 22.42 0.20 -8.12 16 24 C 0.23 9.55 7.20 22.36 0.16 9.72 16 25 F -0.12 -5.19 15.33 44.97 0.69 -4.50 16 26 H 0.23 7.28 7.80 -4.42 -0.03 7.25 16 27 H 0.11 5.24 6.43 -2.38 -0.02 5.23 16 28 H 0.08 3.81 6.95 -2.39 -0.02 3.80 16 29 H 0.29 12.18 8.31 -92.71 -0.77 11.41 16 30 H 0.17 4.57 8.06 -2.91 -0.02 4.54 16 31 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.82 7.67 -2.39 -0.02 0.81 16 33 H 0.07 0.85 7.65 -2.39 -0.02 0.83 16 34 H 0.18 4.09 6.30 -2.91 -0.02 4.07 16 Total: -1.00 -65.94 319.95 4.27 -61.67 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.16 Total: 18.38 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 5.60 Total: -38.86 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -0.82 Total: -77.91 kcal Atomic # 8 Polarization: -115.58 SS G_CDS: -4.78 Total: -120.35 kcal Atomic # 9 Polarization: -10.21 SS G_CDS: 1.38 Total: -8.83 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.39 kcal Atomic # 16 Polarization: 127.84 SS G_CDS: -0.31 Total: 127.52 kcal Total: -65.94 4.27 -61.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798491233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.010 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds