Wall clock time and date at job start Tue Mar 31 2020 17:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00148 * 2 1 4 4 C 1.38548 * 111.00312 * 236.04276 * 2 1 3 5 5 N 1.33037 * 120.52445 * 62.72979 * 4 2 1 6 6 C 1.31746 * 120.72432 * 179.71676 * 5 4 2 7 7 N 1.31784 * 121.84491 * 0.57497 * 6 5 4 8 8 C 1.32661 * 120.98777 * 359.71707 * 7 6 5 9 9 Cl 1.73593 * 120.41534 * 180.02562 * 8 7 6 10 10 C 1.38315 * 119.16508 * 359.97438 * 8 7 6 11 11 C 1.50706 * 120.83673 * 180.02562 * 10 8 7 12 12 O 1.45193 * 109.46937 * 275.03636 * 11 10 8 13 13 C 1.34236 * 116.99854 * 180.02562 * 12 11 10 14 14 O 1.20823 * 119.99633 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99863 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46779 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99994 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99995 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00410 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99595 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00325 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47138 * 90.00243 * 21 19 17 23 23 H 1.48503 * 109.47262 * 210.00695 * 21 19 17 24 24 H 1.48503 * 109.46817 * 330.00010 * 21 19 17 25 25 H 1.09002 * 109.47290 * 183.95832 * 1 2 3 26 26 H 1.09003 * 109.47057 * 63.95481 * 1 2 3 27 27 H 1.09007 * 109.47516 * 303.95821 * 1 2 3 28 28 H 1.09000 * 109.47652 * 62.99968 * 3 2 1 29 29 H 1.08999 * 109.47321 * 183.00850 * 3 2 1 30 30 H 1.09008 * 109.47000 * 303.00674 * 3 2 1 31 31 H 1.08003 * 119.07359 * 180.29169 * 6 5 4 32 32 H 1.08993 * 109.46812 * 35.03802 * 11 10 8 33 33 H 1.09006 * 109.46920 * 155.03804 * 11 10 8 34 34 H 1.09003 * 109.46680 * 299.99096 * 15 13 12 35 35 H 1.08991 * 109.47612 * 59.99676 * 15 13 12 36 36 H 0.96996 * 119.99869 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9656 -0.7225 -1.0728 5 7 1.7175 -0.3350 -2.3211 6 6 2.1924 -1.0159 -3.3442 7 7 2.9163 -2.1047 -3.1789 8 6 3.2016 -2.5575 -1.9651 9 17 4.1571 -3.9929 -1.7646 10 6 2.7291 -1.8709 -0.8612 11 6 3.0311 -2.3514 0.5349 12 8 2.0559 -3.3546 0.9230 13 6 2.1845 -3.8876 2.1482 14 8 3.0825 -3.5280 2.8722 15 6 1.2094 -4.9352 2.6203 16 16 1.6458 -5.4526 4.2990 17 6 0.3804 -6.6436 4.5907 18 1 -0.3545 -6.8489 3.8264 19 6 0.3288 -7.3188 5.8024 20 7 1.2248 -7.0690 6.7337 21 14 -1.0123 -8.5819 6.1113 22 1 -0.5434 -9.9198 5.6694 23 1 -1.3294 -8.6226 7.5615 24 1 -2.2302 -8.2073 5.3487 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3633 0.4512 -0.9233 27 1 -0.3634 0.5741 0.8524 28 1 1.6902 1.8779 0.9156 29 1 3.0837 1.3429 -0.0539 30 1 1.6030 1.9113 -0.8619 31 1 1.9786 -0.6748 -4.3463 32 1 4.0301 -2.7865 0.5612 33 1 2.9826 -1.5106 1.2269 34 1 0.2013 -4.5206 2.6180 35 1 1.2497 -5.7961 1.9531 36 1 1.1885 -7.5405 7.5806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801224834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:06 Heat of formation + Delta-G solvation = -22.293552 kcal Electronic energy + Delta-G solvation = -23099.512548 eV Core-core repulsion = 19351.201977 eV Total energy + Delta-G solvation = -3748.310571 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83371 -39.95232 -38.08756 -37.18290 -36.24408 -33.54392 -32.92324 -32.48392 -29.81859 -28.05398 -27.32720 -26.13650 -25.54503 -23.37489 -22.57304 -20.99439 -18.76454 -18.16373 -17.95798 -17.21414 -16.22380 -16.16986 -16.04195 -15.62438 -15.08309 -14.84730 -14.83787 -14.32750 -14.26653 -14.05770 -13.52604 -12.87345 -12.70273 -12.60613 -12.52949 -12.43607 -12.13871 -12.11538 -11.87913 -11.33271 -11.10025 -11.06810 -10.82055 -10.71498 -10.54293 -10.17856 -9.94210 -9.91348 -9.73815 -9.25300 -9.11377 -8.35667 -6.59842 -6.27276 -3.99670 0.16182 0.29772 1.19588 2.61367 2.67362 2.97116 3.08897 3.20651 3.25774 3.29621 3.53799 3.61270 3.81759 4.13398 4.16591 4.36683 4.65937 4.81205 4.94328 5.08629 5.11871 5.12828 5.21568 5.31645 5.40838 5.44754 5.48970 5.58124 5.63589 5.78296 6.08299 6.20551 6.21683 6.53984 6.66175 7.39534 7.55530 8.16355 8.30440 9.18328 10.80205 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002859 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.918873 B = 9790.223941 C =10524.884464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.495 5.495 3 C 0.028 3.972 4 C 0.379 3.621 5 N -0.547 5.547 6 C 0.332 3.668 7 N -0.519 5.519 8 C 0.243 3.757 9 Cl 0.008 6.992 10 C -0.154 4.154 11 C 0.120 3.880 12 O -0.352 6.352 13 C 0.482 3.518 14 O -0.484 6.484 15 C -0.128 4.128 16 S -0.056 6.056 17 C -0.536 4.536 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.921 3.079 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.271 1.271 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.209 0.791 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 15.365 -19.303 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.219 5.219 3 C -0.119 4.119 4 C 0.142 3.858 5 N -0.264 5.264 6 C 0.043 3.957 7 N -0.235 5.235 8 C 0.070 3.930 9 Cl 0.037 6.963 10 C -0.161 4.161 11 C 0.045 3.955 12 O -0.271 6.271 13 C 0.323 3.677 14 O -0.369 6.369 15 C -0.275 4.275 16 S 0.170 5.830 17 C -0.684 4.684 18 H 0.094 0.906 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.747 3.253 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.196 1.196 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.225 0.775 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.690 15.774 -18.692 24.606 hybrid contribution -1.737 -1.183 -0.598 2.185 sum 0.953 14.592 -19.290 24.206 Atomic orbital electron populations 1.22484 0.83303 1.03775 1.02220 1.60026 1.10738 1.15712 1.35380 1.22477 1.00656 0.86144 1.02634 1.19991 0.88191 0.89886 0.87737 1.68612 1.23607 1.34049 1.00169 1.24872 0.87048 0.85183 0.98555 1.67961 1.16124 1.15272 1.24166 1.22015 0.91830 0.89807 0.89318 1.98475 1.67918 1.33380 1.96568 1.20820 1.02061 0.96869 0.96390 1.21400 0.91903 0.91945 0.90279 1.86536 1.53102 1.52384 1.35038 1.23280 0.84904 0.80975 0.78533 1.90671 1.32733 1.58869 1.54676 1.23300 1.00100 0.97846 1.06301 1.85411 1.41409 1.51118 1.05047 1.22846 1.15529 1.25917 1.04142 0.90613 1.24997 0.96654 0.96951 0.94872 1.70009 1.33748 1.40617 1.05843 0.86130 0.80883 0.80644 0.77647 1.20195 1.20716 1.19589 0.90550 0.93505 0.89596 0.89563 0.91199 0.93454 0.77509 0.89793 0.88113 0.87951 0.87963 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.46 60.06 0.57 0.82 16 2 N -0.50 -4.97 4.00 -188.80 -0.75 -5.73 16 3 C 0.03 0.21 9.41 60.07 0.57 0.77 16 4 C 0.38 4.18 5.31 -154.77 -0.82 3.36 16 5 N -0.55 -5.48 9.83 -13.83 -0.14 -5.61 16 6 C 0.33 2.95 12.28 -92.20 -1.13 1.82 16 7 N -0.52 -5.68 10.43 -11.76 -0.12 -5.81 16 8 C 0.24 2.89 7.32 -17.17 -0.13 2.77 16 9 Cl 0.01 0.09 27.73 -51.86 -1.44 -1.35 16 10 C -0.15 -1.86 5.58 -104.11 -0.58 -2.45 16 11 C 0.12 1.62 5.00 36.01 0.18 1.80 16 12 O -0.35 -5.61 10.20 -39.27 -0.40 -6.02 16 13 C 0.48 9.12 7.98 36.01 0.29 9.41 16 14 O -0.48 -10.40 15.61 -18.75 -0.29 -10.69 16 15 C -0.13 -2.58 6.27 36.01 0.23 -2.35 16 16 S -0.06 -1.48 20.58 -107.50 -2.21 -3.70 16 17 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 18 H 0.08 2.00 7.80 -52.48 -0.41 1.59 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 21 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.05 0.34 8.07 -51.92 -0.42 -0.07 16 31 H 0.21 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.08 1.11 7.23 -51.93 -0.38 0.74 16 33 H 0.10 1.35 7.41 -51.93 -0.38 0.97 16 34 H 0.10 1.91 8.14 -51.92 -0.42 1.49 16 35 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -32.84 349.66 -9.10 -41.94 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.09 Total: -2.78 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.64 Total: 3.30 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.28 Total: -42.01 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.69 Total: -16.70 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.70 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.44 Total: -1.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.84 -9.10 -41.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801224834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.649 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds