Wall clock time and date at job start Tue Mar 31 2020 16:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86797 * 120.00253 * 2 1 4 4 H 1.48495 * 109.47383 * 270.00210 * 3 2 1 5 5 H 1.48499 * 109.47096 * 30.00491 * 3 2 1 6 6 H 1.48510 * 109.46856 * 150.00030 * 3 2 1 7 7 C 1.38952 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99940 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00468 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00068 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00344 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00113 * 180.02562 * 10 9 7 13 13 N 1.46490 * 109.47333 * 180.02562 * 12 10 9 14 14 C 1.34783 * 120.00162 * 180.02562 * 13 12 10 15 15 O 1.21615 * 119.99465 * 359.97438 * 14 13 12 16 16 C 1.47384 * 120.00141 * 180.02562 * 14 13 12 17 17 C 1.39980 * 120.61324 * 0.24937 * 16 14 13 18 18 C 1.38328 * 118.37279 * 180.24131 * 17 16 14 19 19 C 1.38403 * 119.52302 * 359.50648 * 18 17 16 20 20 N 1.31823 * 121.23303 * 0.25184 * 19 18 17 21 21 C 1.32513 * 121.75982 * 0.02562 * 20 19 18 22 22 S 1.76205 * 119.83030 * 180.02562 * 21 20 19 23 23 C 1.81006 * 100.00005 * 359.97438 * 22 21 20 24 24 F 1.39895 * 109.47083 * 300.00615 * 23 22 21 25 25 F 1.39902 * 109.46753 * 60.00297 * 23 22 21 26 26 H 0.97002 * 119.99594 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99665 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46968 * 59.99545 * 12 10 9 29 29 H 1.09010 * 109.46636 * 300.00531 * 12 10 9 30 30 H 0.97003 * 120.00457 * 359.97438 * 13 12 10 31 31 H 1.08001 * 120.81102 * 359.97438 * 17 16 14 32 32 H 1.08002 * 120.24083 * 179.78903 * 18 17 16 33 33 H 1.08007 * 119.38689 * 180.23409 * 19 18 17 34 34 H 1.08994 * 109.47204 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4211 -0.0011 12 6 5.5606 -2.3708 -0.0011 13 7 6.0488 -3.7520 -0.0017 14 6 7.3740 -3.9984 -0.0013 15 8 8.1642 -3.0740 -0.0009 16 6 7.8652 -5.3879 -0.0025 17 6 6.9669 -6.4615 -0.0093 18 6 7.4785 -7.7467 -0.0050 19 6 8.8497 -7.9349 -0.0046 20 7 9.6802 -6.9112 -0.0032 21 6 9.2446 -5.6597 -0.0017 22 16 10.4001 -4.3294 -0.0007 23 6 11.9520 -5.2611 -0.0014 24 9 12.0123 -6.0675 1.1401 25 9 12.0123 -6.0656 -1.1444 26 1 -0.4849 0.8401 0.0004 27 1 3.8648 -0.3634 -0.0007 28 1 5.9240 -1.8569 0.8889 29 1 5.9239 -1.8569 -0.8911 30 1 5.4185 -4.4893 -0.0016 31 1 5.9005 -6.2905 -0.0133 32 1 6.8128 -8.5972 -0.0066 33 1 9.2468 -8.9393 -0.0051 34 1 12.7924 -4.5671 -0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804820462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:58 Heat of formation + Delta-G solvation = -114.399010 kcal Electronic energy + Delta-G solvation = -24820.109182 eV Core-core repulsion = 20516.007938 eV Total energy + Delta-G solvation = -4304.101244 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.09986 -47.19898 -40.80709 -39.34259 -38.31893 -34.80493 -34.00568 -32.97601 -31.90825 -31.79008 -28.16800 -27.08978 -25.13171 -24.26972 -23.82289 -20.82635 -19.85662 -19.23993 -18.74146 -18.03275 -17.67866 -17.44643 -17.08019 -16.81052 -15.84826 -15.69541 -15.37077 -15.16019 -14.91443 -14.68616 -14.44672 -14.06352 -13.76094 -13.64419 -13.52104 -13.42942 -13.15793 -12.80397 -12.56704 -12.26265 -12.24145 -11.97837 -11.29555 -11.08662 -10.69938 -10.60796 -10.12979 -10.09937 -10.08262 -9.77325 -9.62693 -9.16436 -8.87937 -8.38157 -8.15575 -6.47409 -4.00469 0.23265 0.72857 0.77886 1.33177 2.63490 2.94150 2.96009 2.99729 3.08703 3.41409 3.48038 3.68566 3.97679 4.06315 4.34164 4.35008 4.38818 4.42659 4.45889 4.63257 4.83267 5.07151 5.08064 5.45726 5.55720 5.65779 5.67692 5.68585 6.06687 6.30112 7.25873 7.35225 7.45350 7.90811 8.04168 8.36895 8.74221 9.22074 9.54127 10.64506 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.002580 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.856562 B =10848.868638 C =11822.931238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.122 0.878 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.581 6.581 12 C 0.106 3.894 13 N -0.695 5.695 14 C 0.557 3.443 15 O -0.518 6.518 16 C -0.166 4.166 17 C -0.022 4.022 18 C -0.179 4.179 19 C 0.143 3.857 20 N -0.480 5.480 21 C 0.149 3.851 22 S 0.058 5.942 23 C 0.229 3.771 24 F -0.183 7.183 25 F -0.183 7.183 26 H 0.276 0.724 27 H 0.375 0.625 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.412 0.588 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.167 0.833 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.156 -11.090 -0.028 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.465 6.465 12 C -0.022 4.022 13 N -0.349 5.349 14 C 0.343 3.657 15 O -0.398 6.398 16 C -0.178 4.178 17 C -0.050 4.050 18 C -0.201 4.201 19 C -0.019 4.019 20 N -0.191 5.191 21 C -0.100 4.100 22 S 0.295 5.705 23 C 0.066 3.934 24 F -0.165 7.165 25 F -0.165 7.165 26 H 0.087 0.913 27 H 0.208 0.792 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.252 0.748 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 21.945 -9.893 -0.028 24.071 hybrid contribution -0.606 -0.352 0.017 0.701 sum 21.339 -10.244 -0.011 23.670 Atomic orbital electron populations 1.69614 1.05745 1.27933 1.47748 1.25075 0.95542 0.98229 0.96989 0.86669 0.79921 0.83703 0.79194 1.19327 1.19917 1.19189 1.19440 0.78880 0.96836 1.48876 0.86034 1.42112 1.07751 1.06119 1.65023 1.19560 0.87893 0.84965 0.85419 1.90535 1.69129 1.30891 1.55987 1.21056 0.94077 0.83233 1.03806 1.45498 1.06306 1.09754 1.73331 1.17802 0.82716 0.87804 0.77407 1.90674 1.54007 1.44353 1.50781 1.20468 0.92978 0.94846 1.09535 1.21870 1.00376 0.91754 0.90982 1.22127 0.96893 0.97970 1.03153 1.22984 0.90021 0.97849 0.91044 1.68225 1.38737 0.97566 1.14608 1.23101 0.93928 0.95949 0.97022 1.88003 0.91439 1.01830 1.89203 1.24749 1.05309 0.89394 0.73917 1.93081 1.97401 1.76116 1.49866 1.93083 1.97402 1.76230 1.49757 0.91289 0.79171 0.89230 0.89224 0.74837 0.83124 0.83407 0.81615 0.84485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.35 13.96 55.50 0.77 -23.58 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.45 27.74 -169.99 -4.71 13.74 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.09 6.52 56.52 0.37 -4.72 16 7 C -0.31 -8.34 10.16 -14.93 -0.15 -8.49 16 8 H 0.12 3.71 7.39 -52.48 -0.39 3.32 16 9 N -0.57 -12.77 5.09 -10.96 -0.06 -12.83 16 10 C 0.44 9.08 7.85 -10.99 -0.09 8.99 16 11 O -0.58 -13.91 15.24 5.55 0.08 -13.83 16 12 C 0.11 1.70 6.15 -5.20 -0.03 1.67 16 13 N -0.70 -10.35 5.48 -62.58 -0.34 -10.69 16 14 C 0.56 8.20 7.75 -12.54 -0.10 8.10 16 15 O -0.52 -8.52 13.80 5.26 0.07 -8.45 16 16 C -0.17 -2.14 5.91 -104.63 -0.62 -2.76 16 17 C -0.02 -0.23 9.64 -38.90 -0.37 -0.60 16 18 C -0.18 -1.44 10.09 -39.49 -0.40 -1.84 16 19 C 0.14 1.30 11.16 -17.49 -0.20 1.10 16 20 N -0.48 -5.89 7.80 -11.68 -0.09 -5.98 16 21 C 0.15 1.98 6.91 -16.37 -0.11 1.87 16 22 S 0.06 0.72 19.25 -107.50 -2.07 -1.35 16 23 C 0.23 2.34 5.42 101.05 0.55 2.89 16 24 F -0.18 -2.18 16.44 2.25 0.04 -2.14 16 25 F -0.18 -2.18 16.44 2.25 0.04 -2.15 16 26 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.37 7.34 5.76 -40.82 -0.24 7.11 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.33 8.14 -51.92 -0.42 0.90 16 30 H 0.41 5.92 5.54 -40.82 -0.23 5.69 16 31 H 0.15 1.31 6.51 -52.49 -0.34 0.96 16 32 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.17 0.97 8.06 -52.48 -0.42 0.54 16 34 H 0.14 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 322.55 15.07 4.86 4.86 Total: -1.00 -33.14 322.55 -5.49 -38.64 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -2.47 Total: 11.71 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -1.61 Total: 12.04 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.28 Total: -53.08 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.16 Total: -22.28 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.07 Total: -4.29 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.71 Total: 13.74 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.07 Total: -1.35 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.14 -5.49 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.762 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds