Wall clock time and date at job start Tue Mar 31 2020 16:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86797 * 120.00253 * 2 1 4 4 H 1.48495 * 109.47383 * 270.00210 * 3 2 1 5 5 H 1.48499 * 109.47096 * 30.00491 * 3 2 1 6 6 H 1.48510 * 109.46856 * 150.00030 * 3 2 1 7 7 C 1.38952 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99940 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00468 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00068 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00344 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00113 * 180.02562 * 10 9 7 13 13 N 1.46490 * 109.47333 * 180.02562 * 12 10 9 14 14 C 1.34783 * 120.00162 * 180.02562 * 13 12 10 15 15 O 1.21615 * 119.99465 * 359.97438 * 14 13 12 16 16 C 1.47384 * 120.00141 * 180.02562 * 14 13 12 17 17 C 1.39980 * 120.61324 * 0.24937 * 16 14 13 18 18 C 1.38328 * 118.37279 * 180.24131 * 17 16 14 19 19 C 1.38403 * 119.52302 * 359.50648 * 18 17 16 20 20 N 1.31823 * 121.23303 * 0.25184 * 19 18 17 21 21 C 1.32513 * 121.75982 * 0.02562 * 20 19 18 22 22 S 1.76205 * 119.83030 * 180.02562 * 21 20 19 23 23 C 1.81006 * 100.00005 * 359.97438 * 22 21 20 24 24 F 1.39895 * 109.47083 * 300.00615 * 23 22 21 25 25 F 1.39902 * 109.46753 * 60.00297 * 23 22 21 26 26 H 0.97002 * 119.99594 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99665 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46968 * 59.99545 * 12 10 9 29 29 H 1.09010 * 109.46636 * 300.00531 * 12 10 9 30 30 H 0.97003 * 120.00457 * 359.97438 * 13 12 10 31 31 H 1.08001 * 120.81102 * 359.97438 * 17 16 14 32 32 H 1.08002 * 120.24083 * 179.78903 * 18 17 16 33 33 H 1.08007 * 119.38689 * 180.23409 * 19 18 17 34 34 H 1.08994 * 109.47204 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4211 -0.0011 12 6 5.5606 -2.3708 -0.0011 13 7 6.0488 -3.7520 -0.0017 14 6 7.3740 -3.9984 -0.0013 15 8 8.1642 -3.0740 -0.0009 16 6 7.8652 -5.3879 -0.0025 17 6 6.9669 -6.4615 -0.0093 18 6 7.4785 -7.7467 -0.0050 19 6 8.8497 -7.9349 -0.0046 20 7 9.6802 -6.9112 -0.0032 21 6 9.2446 -5.6597 -0.0017 22 16 10.4001 -4.3294 -0.0007 23 6 11.9520 -5.2611 -0.0014 24 9 12.0123 -6.0675 1.1401 25 9 12.0123 -6.0656 -1.1444 26 1 -0.4849 0.8401 0.0004 27 1 3.8648 -0.3634 -0.0007 28 1 5.9240 -1.8569 0.8889 29 1 5.9239 -1.8569 -0.8911 30 1 5.4185 -4.4893 -0.0016 31 1 5.9005 -6.2905 -0.0133 32 1 6.8128 -8.5972 -0.0066 33 1 9.2468 -8.9393 -0.0051 34 1 12.7924 -4.5671 -0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804820462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:57 Heat of formation + Delta-G solvation = -139.365443 kcal Electronic energy + Delta-G solvation = -24821.191808 eV Core-core repulsion = 20516.007938 eV Total energy + Delta-G solvation = -4305.183869 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.95985 -48.06940 -41.76577 -40.62830 -39.77322 -36.35908 -35.55430 -33.94676 -33.75926 -32.63708 -29.58354 -27.89160 -26.63115 -25.30703 -24.82751 -21.92963 -21.52199 -20.70008 -19.92226 -19.16155 -18.57207 -18.30546 -18.04718 -17.79978 -17.26788 -16.92368 -16.73636 -16.52874 -15.90660 -15.89119 -15.68199 -15.11429 -14.99909 -14.78565 -14.56243 -14.40197 -14.37009 -14.16935 -13.92871 -13.67507 -13.57497 -12.97070 -12.81391 -12.44641 -12.03171 -11.99812 -11.58270 -11.37904 -10.96169 -10.93751 -10.67341 -10.59569 -10.37905 -10.29525 -9.04864 -8.45778 -6.07844 -0.62093 -0.05096 -0.04601 0.47934 1.31370 1.34398 1.44192 1.63279 1.78539 1.80426 2.20584 2.58000 2.82175 2.97856 3.10757 3.29967 3.48435 3.57141 3.59348 3.67095 3.86332 3.96160 4.12068 4.33238 4.39059 4.42736 4.74130 4.95939 5.08329 5.39635 5.47580 5.87669 6.27806 6.47486 6.49347 6.77781 6.89619 7.28461 7.76659 8.70490 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.002580 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.856562 B =10848.868638 C =11822.931238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.331 4.331 8 H 0.065 0.935 9 N -0.577 5.577 10 C 0.445 3.555 11 O -0.614 6.614 12 C 0.118 3.882 13 N -0.698 5.698 14 C 0.558 3.442 15 O -0.538 6.538 16 C -0.186 4.186 17 C -0.027 4.027 18 C -0.162 4.162 19 C 0.141 3.859 20 N -0.500 5.500 21 C 0.133 3.867 22 S 0.022 5.978 23 C 0.236 3.764 24 F -0.193 7.193 25 F -0.193 7.193 26 H 0.281 0.719 27 H 0.392 0.608 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.414 0.586 31 H 0.162 0.838 32 H 0.187 0.813 33 H 0.201 0.799 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.592 -11.182 0.007 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.154 1.154 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.216 5.216 10 C 0.232 3.768 11 O -0.500 6.500 12 C -0.009 4.009 13 N -0.352 5.352 14 C 0.346 3.654 15 O -0.419 6.419 16 C -0.199 4.199 17 C -0.054 4.054 18 C -0.184 4.184 19 C -0.020 4.020 20 N -0.213 5.213 21 C -0.116 4.116 22 S 0.259 5.741 23 C 0.073 3.927 24 F -0.174 7.174 25 F -0.174 7.174 26 H 0.091 0.909 27 H 0.228 0.772 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.254 0.746 31 H 0.179 0.821 32 H 0.204 0.796 33 H 0.218 0.782 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 24.406 -10.007 0.009 26.378 hybrid contribution -1.362 -0.594 0.001 1.486 sum 23.044 -10.601 0.010 25.366 Atomic orbital electron populations 1.69777 1.08059 1.29465 1.49213 1.26058 0.96405 1.02593 0.95703 0.85460 0.79636 0.77073 0.80057 1.18122 1.19984 1.15449 1.19028 0.80939 0.95275 1.50747 0.91718 1.41918 1.06145 1.07460 1.66108 1.20444 0.89936 0.83922 0.82466 1.90523 1.70721 1.32239 1.56489 1.20964 0.89737 0.84533 1.05716 1.45487 1.06619 1.09232 1.73866 1.18048 0.82136 0.88585 0.76646 1.90669 1.54423 1.45287 1.51559 1.20392 0.93469 0.94401 1.11614 1.22116 1.00621 0.92052 0.90625 1.22541 0.97065 0.98207 1.00565 1.23673 0.90474 0.98534 0.89341 1.68250 1.39817 0.97753 1.15434 1.23147 0.94005 0.96440 0.98018 1.87925 0.93299 1.03433 1.89429 1.25021 1.05231 0.89364 0.73039 1.93055 1.97370 1.76527 1.50472 1.93057 1.97370 1.76639 1.50364 0.90926 0.77171 0.87269 0.87180 0.74646 0.82088 0.79593 0.78235 0.80103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.44 13.96 21.66 0.30 -53.14 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 0.96 37.10 27.74 68.60 1.90 39.00 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 7 C -0.33 -18.25 10.16 84.04 0.85 -17.40 16 8 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 9 N -0.58 -25.41 5.09 -306.98 -1.56 -26.98 16 10 C 0.44 18.35 7.85 87.66 0.69 19.03 16 11 O -0.61 -29.94 15.24 -3.06 -0.05 -29.98 16 12 C 0.12 3.57 6.15 85.64 0.53 4.10 16 13 N -0.70 -20.04 5.48 -470.14 -2.58 -22.61 16 14 C 0.56 15.99 7.75 86.65 0.67 16.66 16 15 O -0.54 -17.29 13.80 -4.08 -0.06 -17.34 16 16 C -0.19 -4.64 5.91 -19.87 -0.12 -4.76 16 17 C -0.03 -0.50 9.64 22.71 0.22 -0.28 16 18 C -0.16 -2.11 10.09 22.33 0.23 -1.88 16 19 C 0.14 2.18 11.16 84.73 0.95 3.12 16 20 N -0.50 -11.51 7.80 -190.86 -1.49 -13.00 16 21 C 0.13 3.41 6.91 85.17 0.59 4.00 16 22 S 0.02 0.54 19.25 -56.49 -1.09 -0.55 16 23 C 0.24 4.49 5.42 113.37 0.61 5.10 16 24 F -0.19 -4.35 16.44 44.97 0.74 -3.61 16 25 F -0.19 -4.35 16.44 44.97 0.74 -3.61 16 26 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.39 14.43 5.76 -92.71 -0.53 13.89 16 28 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 30 H 0.41 11.62 5.54 -92.71 -0.51 11.10 16 31 H 0.16 2.54 6.51 -2.91 -0.02 2.52 16 32 H 0.19 0.98 8.06 -2.91 -0.02 0.95 16 33 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.18 1.82 8.14 -2.40 -0.02 1.80 16 Total: -1.00 -76.37 322.55 2.65 -73.72 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.10 Total: 30.34 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: 5.68 Total: 27.77 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -5.33 Total: -115.73 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -0.10 Total: -47.33 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 1.48 Total: -7.22 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 1.90 Total: 39.00 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -1.09 Total: -0.55 kcal Total: -76.37 2.65 -73.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.648 kcal (2) G-P(sol) polarization free energy of solvation -76.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds