Wall clock time and date at job start Tue Mar 31 2020 16:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48501 * 109.46851 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47292 * 300.00278 * 3 2 1 6 6 H 1.48500 * 109.47143 * 60.00690 * 3 2 1 7 7 C 1.37878 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47224 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47145 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46880 * 54.99699 * 11 10 9 13 13 N 1.46898 * 109.46816 * 294.99863 * 11 10 9 14 14 C 1.50701 * 109.46744 * 174.99919 * 11 10 9 15 15 O 1.21279 * 119.99788 * 100.00540 * 14 11 10 16 16 N 1.34777 * 119.99868 * 280.00014 * 14 11 10 17 17 N 1.40103 * 119.99721 * 180.02562 * 16 14 11 18 18 C 1.39832 * 119.99843 * 174.34437 * 17 16 14 19 19 C 1.38953 * 120.07940 * 324.02811 * 18 17 16 20 20 Cl 1.73593 * 120.04419 * 359.97438 * 19 18 17 21 21 C 1.38233 * 119.91486 * 179.74198 * 19 18 17 22 22 C 1.38281 * 120.07998 * 0.52845 * 21 19 18 23 23 C 1.38282 * 120.16103 * 359.72414 * 22 21 19 24 24 C 1.38224 * 120.08212 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 120.03850 * 179.97438 * 24 23 22 26 26 H 0.96998 * 119.99749 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46996 * 60.00034 * 9 7 2 28 28 H 1.09008 * 109.47067 * 300.00491 * 9 7 2 29 29 H 1.09001 * 109.46986 * 59.99642 * 10 9 7 30 30 H 1.08999 * 109.47098 * 299.99848 * 10 9 7 31 31 H 1.00907 * 110.99420 * 176.04868 * 13 11 10 32 32 H 1.00896 * 111.00084 * 299.99847 * 13 11 10 33 33 H 0.96992 * 120.00109 * 359.97438 * 16 14 11 34 34 H 0.96996 * 120.00064 * 354.34462 * 17 16 14 35 35 H 1.08002 * 119.96136 * 180.25168 * 21 19 18 36 36 H 1.08002 * 119.91628 * 179.74138 * 22 21 19 37 37 H 1.07995 * 119.95566 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7878 -5.0072 -0.8414 13 7 0.7290 -5.1181 1.2556 14 6 2.4549 -6.1299 -0.1237 15 8 2.7870 -6.7531 0.8622 16 7 2.9573 -6.4592 -1.3302 17 7 3.8630 -7.5219 -1.4454 18 6 4.2932 -7.9401 -2.7085 19 6 3.4152 -7.9196 -3.7853 20 17 1.7817 -7.3753 -3.5645 21 6 3.8456 -8.3287 -5.0336 22 6 5.1449 -8.7682 -5.2090 23 6 6.0199 -8.7949 -4.1386 24 6 5.5981 -8.3825 -2.8885 25 17 6.6973 -8.4171 -1.5453 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.1646 -5.9546 1.2537 32 1 1.3491 -5.1022 2.0514 33 1 2.6914 -5.9610 -2.1188 34 1 4.1916 -7.9676 -0.6490 35 1 3.1650 -8.3093 -5.8719 36 1 5.4772 -9.0912 -6.1846 37 1 7.0338 -9.1392 -4.2793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818056709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:17 Heat of formation + Delta-G solvation = 8.137805 kcal Electronic energy + Delta-G solvation = -23100.947297 eV Core-core repulsion = 19351.912622 eV Total energy + Delta-G solvation = -3749.034675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40387 -39.51761 -37.10590 -36.59787 -36.27851 -35.20051 -32.84407 -32.34686 -31.01835 -30.15591 -28.63414 -26.24442 -23.92029 -23.32526 -22.57075 -21.03192 -20.08722 -18.59507 -17.75328 -17.22268 -16.41611 -16.26996 -15.89875 -15.51639 -14.92749 -14.73389 -14.69900 -14.49902 -14.31224 -14.22425 -13.57862 -12.79575 -12.63811 -12.39741 -12.31243 -12.07532 -11.80679 -11.55697 -11.43647 -11.30943 -11.25793 -10.92386 -10.73375 -10.56877 -10.25683 -9.84711 -9.54436 -9.41524 -9.16480 -9.01371 -8.47511 -8.26500 -7.64530 -5.95353 -3.97479 0.56859 0.69403 1.47913 1.89499 1.96819 2.62250 3.05652 3.33354 3.41049 3.44993 3.94483 4.36916 4.47913 4.49871 4.67218 4.74495 4.89649 4.99499 5.05970 5.39713 5.42475 5.46578 5.60141 5.72234 5.82769 6.06914 6.36477 6.48581 6.61663 7.02465 7.07421 7.35718 7.54421 7.70134 7.74595 7.93245 8.10175 8.27042 8.46254 9.10409 9.65915 11.15537 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.002919 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.828208 B = 9588.459588 C = 9610.080132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.098 4.098 11 C 0.091 3.909 12 H 0.101 0.899 13 N -0.800 5.800 14 C 0.480 3.520 15 O -0.554 6.554 16 N -0.517 5.517 17 N -0.546 5.546 18 C 0.222 3.778 19 C -0.092 4.092 20 Cl -0.047 7.047 21 C -0.064 4.064 22 C -0.140 4.140 23 C -0.065 4.065 24 C -0.082 4.082 25 Cl -0.053 7.053 26 H 0.259 0.741 27 H 0.014 0.986 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.336 0.664 32 H 0.350 0.650 33 H 0.423 0.577 34 H 0.436 0.564 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.401 -21.600 -11.573 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.136 4.136 11 C -0.026 4.026 12 H 0.119 0.881 13 N -0.328 5.328 14 C 0.266 3.734 15 O -0.430 6.430 16 N -0.267 5.267 17 N -0.274 5.274 18 C 0.117 3.883 19 C -0.124 4.124 20 Cl -0.018 7.018 21 C -0.083 4.083 22 C -0.160 4.160 23 C -0.084 4.084 24 C -0.114 4.114 25 Cl -0.024 7.024 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.164 0.836 33 H 0.268 0.732 34 H 0.281 0.719 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.928 -21.012 -10.875 25.288 hybrid contribution 1.015 0.089 0.128 1.027 sum 9.943 -20.923 -10.746 25.537 Atomic orbital electron populations 1.69983 1.05940 1.26333 1.50868 1.24989 0.94808 0.99073 0.95448 0.86594 0.80125 0.84070 0.77543 1.19844 1.21088 1.21043 1.21302 0.92960 0.91243 1.50551 0.92888 1.19031 0.93510 0.89750 0.98323 1.21727 0.98968 0.91943 1.00961 1.21835 0.92994 0.92371 0.95447 0.88135 1.59048 1.26483 1.44241 1.03047 1.23301 0.82413 0.86401 0.81304 1.90660 1.61188 1.54492 1.36708 1.45765 1.42179 1.26752 1.11971 1.43231 1.46494 1.32426 1.05297 1.17069 0.90005 0.96266 0.85000 1.20632 0.86643 1.09903 0.95240 1.98380 1.18409 1.87979 1.97078 1.21036 0.96602 0.95681 0.94996 1.20942 0.92808 1.03012 0.99270 1.21008 1.00702 0.96783 0.89904 1.20502 0.88726 1.11366 0.90819 1.98393 1.61703 1.97287 1.45000 0.93137 0.96764 0.94547 0.92518 0.92730 0.85204 0.83561 0.73216 0.71916 0.84039 0.84094 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 10 C -0.10 -1.94 4.78 -26.73 -0.13 -2.07 16 11 C 0.09 1.50 3.15 -68.86 -0.22 1.29 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.80 -13.10 8.44 -5.65 -0.05 -13.15 16 14 C 0.48 7.57 7.18 -10.98 -0.08 7.49 16 15 O -0.55 -9.96 16.10 5.56 0.09 -9.87 16 16 N -0.52 -7.04 5.02 31.22 0.16 -6.88 16 17 N -0.55 -6.89 5.93 32.46 0.19 -6.70 16 18 C 0.22 2.42 6.51 -83.68 -0.55 1.87 16 19 C -0.09 -0.91 6.23 -39.32 -0.24 -1.16 16 20 Cl -0.05 -0.50 25.26 -51.86 -1.31 -1.81 16 21 C -0.06 -0.47 9.82 -39.57 -0.39 -0.86 16 22 C -0.14 -0.86 10.04 -39.55 -0.40 -1.25 16 23 C -0.06 -0.46 9.82 -39.57 -0.39 -0.85 16 24 C -0.08 -0.78 6.34 -39.32 -0.25 -1.03 16 25 Cl -0.05 -0.52 27.97 -51.86 -1.45 -1.97 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.99 7.75 -51.92 -0.40 0.59 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.34 4.76 9.06 -39.29 -0.36 4.40 16 32 H 0.35 5.79 8.58 -39.29 -0.34 5.46 16 33 H 0.42 5.38 6.29 -182.60 -1.15 4.23 16 34 H 0.44 5.75 7.42 -182.60 -1.36 4.39 16 35 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -31.98 348.08 -10.69 -42.68 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.10 Total: 11.11 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -3.18 Total: -9.34 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 1.04 Total: -52.70 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.76 Total: -3.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.98 -10.69 -42.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818056709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.815 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds