Wall clock time and date at job start Tue Mar 31 2020 16:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48501 * 109.46851 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47292 * 300.00278 * 3 2 1 6 6 H 1.48500 * 109.47143 * 60.00690 * 3 2 1 7 7 C 1.37878 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47224 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47145 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46880 * 54.99699 * 11 10 9 13 13 N 1.46898 * 109.46816 * 294.99863 * 11 10 9 14 14 C 1.50701 * 109.46744 * 174.99919 * 11 10 9 15 15 O 1.21279 * 119.99788 * 100.00540 * 14 11 10 16 16 N 1.34777 * 119.99868 * 280.00014 * 14 11 10 17 17 N 1.40103 * 119.99721 * 180.02562 * 16 14 11 18 18 C 1.39832 * 119.99843 * 174.34437 * 17 16 14 19 19 C 1.38953 * 120.07940 * 324.02811 * 18 17 16 20 20 Cl 1.73593 * 120.04419 * 359.97438 * 19 18 17 21 21 C 1.38233 * 119.91486 * 179.74198 * 19 18 17 22 22 C 1.38281 * 120.07998 * 0.52845 * 21 19 18 23 23 C 1.38282 * 120.16103 * 359.72414 * 22 21 19 24 24 C 1.38224 * 120.08212 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 120.03850 * 179.97438 * 24 23 22 26 26 H 0.96998 * 119.99749 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46996 * 60.00034 * 9 7 2 28 28 H 1.09008 * 109.47067 * 300.00491 * 9 7 2 29 29 H 1.09001 * 109.46986 * 59.99642 * 10 9 7 30 30 H 1.08999 * 109.47098 * 299.99848 * 10 9 7 31 31 H 1.00907 * 110.99420 * 176.04868 * 13 11 10 32 32 H 1.00896 * 111.00084 * 299.99847 * 13 11 10 33 33 H 0.96992 * 120.00109 * 359.97438 * 16 14 11 34 34 H 0.96996 * 120.00064 * 354.34462 * 17 16 14 35 35 H 1.08002 * 119.96136 * 180.25168 * 21 19 18 36 36 H 1.08002 * 119.91628 * 179.74138 * 22 21 19 37 37 H 1.07995 * 119.95566 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7878 -5.0072 -0.8414 13 7 0.7290 -5.1181 1.2556 14 6 2.4549 -6.1299 -0.1237 15 8 2.7870 -6.7531 0.8622 16 7 2.9573 -6.4592 -1.3302 17 7 3.8630 -7.5219 -1.4454 18 6 4.2932 -7.9401 -2.7085 19 6 3.4152 -7.9196 -3.7853 20 17 1.7817 -7.3753 -3.5645 21 6 3.8456 -8.3287 -5.0336 22 6 5.1449 -8.7682 -5.2090 23 6 6.0199 -8.7949 -4.1386 24 6 5.5981 -8.3825 -2.8885 25 17 6.6973 -8.4171 -1.5453 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.1646 -5.9546 1.2537 32 1 1.3491 -5.1022 2.0514 33 1 2.6914 -5.9610 -2.1188 34 1 4.1916 -7.9676 -0.6490 35 1 3.1650 -8.3093 -5.8719 36 1 5.4772 -9.0912 -6.1846 37 1 7.0338 -9.1392 -4.2793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818056709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:16 Heat of formation + Delta-G solvation = -13.202403 kcal Electronic energy + Delta-G solvation = -23101.872678 eV Core-core repulsion = 19351.912622 eV Total energy + Delta-G solvation = -3749.960056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41364 -40.45305 -37.85868 -37.37217 -37.29430 -36.67540 -34.83835 -33.28428 -31.96124 -31.65148 -29.55634 -27.90381 -25.49095 -24.09662 -23.37996 -22.54957 -21.51690 -19.55169 -18.89110 -18.39773 -17.91397 -17.36655 -16.88161 -16.69544 -16.49748 -16.07048 -15.61501 -15.40262 -15.34876 -15.12414 -15.05729 -14.30873 -13.89276 -13.49392 -13.40361 -13.37862 -13.06217 -12.82981 -12.59020 -12.51859 -12.28725 -12.13683 -12.06059 -12.03268 -11.77683 -11.69556 -11.29328 -11.04172 -10.49473 -10.39525 -9.82453 -9.76472 -8.56120 -8.13792 -6.23680 -0.06303 0.00308 0.71548 0.96306 1.24703 1.36934 1.41647 1.42844 1.54970 2.42990 2.44600 2.95783 3.19471 3.45814 3.65903 3.80491 3.86248 4.01908 4.19790 4.23107 4.28693 4.39212 4.72790 4.86332 4.88868 5.08064 5.21216 5.25507 5.42442 5.57532 5.62856 5.83383 5.95151 5.98327 6.11767 6.30234 6.46143 6.50338 6.94621 7.11828 7.44364 8.97531 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.002919 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.828208 B = 9588.459588 C = 9610.080132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.084 4.084 11 C 0.099 3.901 12 H 0.112 0.888 13 N -0.810 5.810 14 C 0.485 3.515 15 O -0.578 6.578 16 N -0.506 5.506 17 N -0.555 5.555 18 C 0.197 3.803 19 C -0.104 4.104 20 Cl -0.060 7.060 21 C -0.064 4.064 22 C -0.121 4.121 23 C -0.062 4.062 24 C -0.090 4.090 25 Cl -0.063 7.063 26 H 0.262 0.738 27 H -0.004 1.004 28 H 0.009 0.991 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.349 0.651 32 H 0.348 0.652 33 H 0.427 0.573 34 H 0.431 0.569 35 H 0.163 0.837 36 H 0.179 0.821 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.025 -22.292 -13.696 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.123 4.123 11 C -0.018 4.018 12 H 0.130 0.870 13 N -0.339 5.339 14 C 0.270 3.730 15 O -0.457 6.457 16 N -0.254 5.254 17 N -0.285 5.285 18 C 0.094 3.906 19 C -0.135 4.135 20 Cl -0.032 7.032 21 C -0.083 4.083 22 C -0.141 4.141 23 C -0.082 4.082 24 C -0.122 4.122 25 Cl -0.034 7.034 26 H 0.071 0.929 27 H 0.014 0.986 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.273 0.727 34 H 0.275 0.725 35 H 0.181 0.819 36 H 0.196 0.804 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.567 -21.727 -13.062 27.465 hybrid contribution 0.559 0.210 0.644 0.879 sum 11.127 -21.517 -12.418 27.221 Atomic orbital electron populations 1.70106 1.07554 1.27435 1.51763 1.25876 0.95699 1.02940 0.95004 0.85502 0.79048 0.79376 0.77720 1.18918 1.20272 1.20667 1.21743 0.93340 0.92708 1.50302 0.92692 1.18835 0.93810 0.91109 0.96032 1.21448 0.97869 0.91959 1.00998 1.21576 0.93097 0.91122 0.96005 0.87039 1.59025 1.26729 1.45249 1.02932 1.22837 0.82373 0.86195 0.81616 1.90646 1.62086 1.55380 1.37591 1.45530 1.41545 1.26951 1.11348 1.43235 1.46849 1.32393 1.06001 1.17303 0.90870 0.97923 0.84545 1.20861 0.86020 1.10602 0.96029 1.98373 1.19428 1.88199 1.97161 1.21400 0.97656 0.94709 0.94552 1.21413 0.91713 1.00534 1.00435 1.21398 1.02085 0.95701 0.88972 1.20732 0.88206 1.11783 0.91477 1.98390 1.61829 1.97356 1.45813 0.92925 0.98556 0.97239 0.93419 0.91691 0.83768 0.83766 0.72707 0.72523 0.81896 0.80368 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.04 2.03 4.86 29.85 0.15 2.18 16 10 C -0.08 -3.40 4.78 30.59 0.15 -3.25 16 11 C 0.10 3.31 3.15 44.17 0.14 3.45 16 12 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 13 N -0.81 -26.98 8.44 -171.80 -1.45 -28.43 16 14 C 0.48 15.34 7.18 87.66 0.63 15.97 16 15 O -0.58 -20.99 16.10 -3.03 -0.05 -21.04 16 16 N -0.51 -13.71 5.02 -173.53 -0.87 -14.58 16 17 N -0.55 -13.94 5.93 -51.22 -0.30 -14.25 16 18 C 0.20 4.10 6.51 38.21 0.25 4.35 16 19 C -0.10 -1.89 6.23 22.44 0.14 -1.75 16 20 Cl -0.06 -1.22 25.26 -2.72 -0.07 -1.29 16 21 C -0.06 -0.76 9.82 22.28 0.22 -0.54 16 22 C -0.12 -0.99 10.04 22.29 0.22 -0.77 16 23 C -0.06 -0.69 9.82 22.28 0.22 -0.48 16 24 C -0.09 -1.58 6.34 22.44 0.14 -1.44 16 25 Cl -0.06 -1.20 27.97 -2.72 -0.08 -1.28 16 26 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 27 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.01 0.52 7.75 -2.38 -0.02 0.50 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.35 9.95 9.06 -89.69 -0.81 9.13 16 32 H 0.35 11.79 8.58 -89.70 -0.77 11.02 16 33 H 0.43 10.75 6.29 -213.33 -1.34 9.40 16 34 H 0.43 11.53 7.42 -213.32 -1.58 9.94 16 35 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 37 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -69.56 348.08 -0.91 -70.47 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -3.35 Total: 32.16 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 2.95 Total: -12.21 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -2.34 Total: -113.33 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.14 Total: -2.57 kcal Total: -69.56 -0.91 -70.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818056709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.268 kcal (2) G-P(sol) polarization free energy of solvation -69.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds