Wall clock time and date at job start Tue Mar 31 2020 16:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99866 * 2 1 4 4 H 1.48491 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47209 * 299.99739 * 3 2 1 6 6 H 1.48498 * 109.47205 * 59.99841 * 3 2 1 7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47152 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47129 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47225 * 305.00109 * 11 10 9 13 13 N 1.46907 * 109.47040 * 65.00138 * 11 10 9 14 14 C 1.50701 * 109.47173 * 184.99729 * 11 10 9 15 15 O 1.21280 * 120.00142 * 260.00300 * 14 11 10 16 16 N 1.34778 * 119.99706 * 79.72829 * 14 11 10 17 17 N 1.40103 * 120.00134 * 180.27607 * 16 14 11 18 18 C 1.39825 * 120.00036 * 185.65636 * 17 16 14 19 19 C 1.38957 * 120.08052 * 215.42556 * 18 17 16 20 20 Cl 1.73600 * 120.04209 * 0.02562 * 19 18 17 21 21 C 1.38230 * 119.91615 * 179.79303 * 19 18 17 22 22 C 1.38280 * 120.08100 * 0.48703 * 21 19 18 23 23 C 1.38278 * 120.16036 * 359.74691 * 22 21 19 24 24 C 1.38224 * 120.08544 * 0.02562 * 23 22 21 25 25 Cl 1.73594 * 120.04053 * 179.97438 * 24 23 22 26 26 H 0.96995 * 120.00153 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47227 * 59.99961 * 9 7 2 28 28 H 1.08998 * 109.46904 * 299.99565 * 9 7 2 29 29 H 1.08997 * 109.47012 * 59.99920 * 10 9 7 30 30 H 1.09003 * 109.46885 * 300.00120 * 10 9 7 31 31 H 1.00902 * 110.99714 * 60.00155 * 13 11 10 32 32 H 1.00900 * 110.99960 * 183.95232 * 13 11 10 33 33 H 0.97007 * 120.00135 * 0.26954 * 16 14 11 34 34 H 0.96998 * 119.99714 * 5.65944 * 17 16 14 35 35 H 1.08003 * 119.95700 * 180.23512 * 21 19 18 36 36 H 1.08001 * 119.91720 * 179.76503 * 22 21 19 37 37 H 1.08004 * 119.95699 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7886 -5.0068 0.8432 13 7 0.7283 -5.1188 -1.2538 14 6 2.4551 -6.1298 0.1249 15 8 2.7866 -6.7535 -0.8609 16 7 2.9626 -6.4550 1.3304 17 7 3.8732 -7.5136 1.4447 18 6 4.3090 -7.9277 2.7071 19 6 5.6146 -8.3696 2.8829 20 17 6.7082 -8.4076 1.5352 21 6 6.0431 -8.7742 4.1333 22 6 5.1712 -8.7492 5.2064 23 6 3.8698 -8.3147 5.0341 24 6 3.4356 -7.9041 3.7877 25 17 1.8014 -7.3596 3.5727 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8721 -3.6043 -0.8895 31 1 1.3479 -5.1034 -2.0500 32 1 0.1639 -5.9553 -1.2510 33 1 2.6975 -5.9560 2.1190 34 1 4.2014 -7.9591 0.6481 35 1 7.0589 -9.1141 4.2715 36 1 5.5077 -9.0695 6.1814 37 1 3.1917 -8.2961 5.8746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818056714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:19 Heat of formation + Delta-G solvation = 8.238337 kcal Electronic energy + Delta-G solvation = -23103.121855 eV Core-core repulsion = 19354.091540 eV Total energy + Delta-G solvation = -3749.030315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40488 -39.51738 -37.10755 -36.59904 -36.27899 -35.20110 -32.84393 -32.34732 -31.01783 -30.15617 -28.63443 -26.24488 -23.92207 -23.32587 -22.57121 -21.03203 -20.08808 -18.59547 -17.75379 -17.22260 -16.41725 -16.26904 -15.89649 -15.51690 -14.93103 -14.73414 -14.69874 -14.50229 -14.31287 -14.22311 -13.58072 -12.79519 -12.63848 -12.39682 -12.31069 -12.07521 -11.81100 -11.55810 -11.43766 -11.31012 -11.25703 -10.92376 -10.73402 -10.56924 -10.25644 -9.84807 -9.54514 -9.41560 -9.16496 -9.01410 -8.47562 -8.26520 -7.64328 -5.95360 -3.97513 0.56908 0.69630 1.47868 1.89242 1.96859 2.62148 3.05673 3.33332 3.41038 3.44996 3.94426 4.36937 4.47878 4.49840 4.67201 4.74553 4.89618 4.99573 5.05955 5.39692 5.42459 5.46504 5.60243 5.72134 5.82869 6.06983 6.36424 6.48472 6.61578 7.02383 7.07319 7.35654 7.54291 7.70130 7.74553 7.93249 8.10162 8.26940 8.46215 9.10377 9.65890 11.15535 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.002923 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.812651 B = 9577.797490 C = 9599.144211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.098 4.098 11 C 0.091 3.909 12 H 0.101 0.899 13 N -0.800 5.800 14 C 0.480 3.520 15 O -0.554 6.554 16 N -0.517 5.517 17 N -0.546 5.546 18 C 0.223 3.777 19 C -0.082 4.082 20 Cl -0.053 7.053 21 C -0.064 4.064 22 C -0.140 4.140 23 C -0.063 4.063 24 C -0.093 4.093 25 Cl -0.047 7.047 26 H 0.259 0.741 27 H 0.036 0.964 28 H 0.014 0.986 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.350 0.650 32 H 0.336 0.664 33 H 0.423 0.577 34 H 0.436 0.564 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.455 -21.556 11.567 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.136 4.136 11 C -0.026 4.026 12 H 0.119 0.881 13 N -0.328 5.328 14 C 0.266 3.734 15 O -0.430 6.430 16 N -0.267 5.267 17 N -0.274 5.274 18 C 0.117 3.883 19 C -0.115 4.115 20 Cl -0.024 7.024 21 C -0.084 4.084 22 C -0.161 4.161 23 C -0.083 4.083 24 C -0.125 4.125 25 Cl -0.018 7.018 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.148 0.852 33 H 0.268 0.732 34 H 0.281 0.719 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.979 -20.969 10.869 25.268 hybrid contribution 1.013 0.088 -0.130 1.026 sum 9.993 -20.881 10.739 25.518 Atomic orbital electron populations 1.69983 1.05937 1.26338 1.50871 1.24989 0.94808 0.99073 0.95447 0.86593 0.80123 0.84069 0.77543 1.19845 1.21044 1.21087 1.21301 0.92961 0.91243 1.50549 0.92889 1.19029 0.93510 0.89748 0.98325 1.21726 0.98969 0.91938 1.00961 1.21837 0.92994 0.92357 0.95457 0.88137 1.59049 1.26479 1.44243 1.03053 1.23304 0.82446 0.86377 0.81303 1.90660 1.61300 1.54401 1.36687 1.45783 1.41772 1.27063 1.12072 1.43235 1.46038 1.32804 1.05338 1.17072 0.90011 0.96242 0.84976 1.20493 0.88752 1.11465 0.90755 1.98393 1.62079 1.97278 1.44637 1.21010 1.00697 0.96775 0.89878 1.20939 0.92790 1.03089 0.99256 1.21031 0.96565 0.95650 0.95035 1.20620 0.86659 1.09956 0.95231 1.98379 1.18365 1.87963 1.97135 0.93136 0.94548 0.96760 0.92737 0.92512 0.83563 0.85202 0.73197 0.71914 0.84037 0.84095 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 10 C -0.10 -1.94 4.78 -26.73 -0.13 -2.07 16 11 C 0.09 1.50 3.15 -68.86 -0.22 1.29 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.80 -13.10 8.44 -5.65 -0.05 -13.15 16 14 C 0.48 7.57 7.18 -10.98 -0.08 7.49 16 15 O -0.55 -9.96 16.10 5.56 0.09 -9.87 16 16 N -0.52 -7.05 5.02 31.22 0.16 -6.89 16 17 N -0.55 -6.90 5.94 32.46 0.19 -6.70 16 18 C 0.22 2.42 6.52 -83.68 -0.55 1.88 16 19 C -0.08 -0.79 6.34 -39.32 -0.25 -1.03 16 20 Cl -0.05 -0.52 27.97 -51.86 -1.45 -1.97 16 21 C -0.06 -0.46 9.82 -39.57 -0.39 -0.85 16 22 C -0.14 -0.86 10.04 -39.55 -0.40 -1.26 16 23 C -0.06 -0.47 9.82 -39.57 -0.39 -0.86 16 24 C -0.09 -0.92 6.23 -39.32 -0.24 -1.16 16 25 Cl -0.05 -0.50 25.24 -51.86 -1.31 -1.80 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.35 5.79 8.58 -39.29 -0.34 5.46 16 32 H 0.34 4.76 9.06 -39.29 -0.36 4.40 16 33 H 0.42 5.39 6.26 -182.59 -1.14 4.24 16 34 H 0.44 5.75 7.41 -182.60 -1.35 4.40 16 35 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -31.98 348.03 -10.69 -42.67 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.09 Total: 11.13 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -3.18 Total: -9.33 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 1.04 Total: -52.72 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.76 Total: -3.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.98 -10.69 -42.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818056714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.906 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds