Wall clock time and date at job start Tue Mar 31 2020 16:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99866 * 2 1 4 4 H 1.48491 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47209 * 299.99739 * 3 2 1 6 6 H 1.48498 * 109.47205 * 59.99841 * 3 2 1 7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47152 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47129 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47225 * 305.00109 * 11 10 9 13 13 N 1.46907 * 109.47040 * 65.00138 * 11 10 9 14 14 C 1.50701 * 109.47173 * 184.99729 * 11 10 9 15 15 O 1.21280 * 120.00142 * 260.00300 * 14 11 10 16 16 N 1.34778 * 119.99706 * 79.72829 * 14 11 10 17 17 N 1.40103 * 120.00134 * 180.27607 * 16 14 11 18 18 C 1.39825 * 120.00036 * 185.65636 * 17 16 14 19 19 C 1.38957 * 120.08052 * 215.42556 * 18 17 16 20 20 Cl 1.73600 * 120.04209 * 0.02562 * 19 18 17 21 21 C 1.38230 * 119.91615 * 179.79303 * 19 18 17 22 22 C 1.38280 * 120.08100 * 0.48703 * 21 19 18 23 23 C 1.38278 * 120.16036 * 359.74691 * 22 21 19 24 24 C 1.38224 * 120.08544 * 0.02562 * 23 22 21 25 25 Cl 1.73594 * 120.04053 * 179.97438 * 24 23 22 26 26 H 0.96995 * 120.00153 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47227 * 59.99961 * 9 7 2 28 28 H 1.08998 * 109.46904 * 299.99565 * 9 7 2 29 29 H 1.08997 * 109.47012 * 59.99920 * 10 9 7 30 30 H 1.09003 * 109.46885 * 300.00120 * 10 9 7 31 31 H 1.00902 * 110.99714 * 60.00155 * 13 11 10 32 32 H 1.00900 * 110.99960 * 183.95232 * 13 11 10 33 33 H 0.97007 * 120.00135 * 0.26954 * 16 14 11 34 34 H 0.96998 * 119.99714 * 5.65944 * 17 16 14 35 35 H 1.08003 * 119.95700 * 180.23512 * 21 19 18 36 36 H 1.08001 * 119.91720 * 179.76503 * 22 21 19 37 37 H 1.08004 * 119.95699 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7886 -5.0068 0.8432 13 7 0.7283 -5.1188 -1.2538 14 6 2.4551 -6.1298 0.1249 15 8 2.7866 -6.7535 -0.8609 16 7 2.9626 -6.4550 1.3304 17 7 3.8732 -7.5136 1.4447 18 6 4.3090 -7.9277 2.7071 19 6 5.6146 -8.3696 2.8829 20 17 6.7082 -8.4076 1.5352 21 6 6.0431 -8.7742 4.1333 22 6 5.1712 -8.7492 5.2064 23 6 3.8698 -8.3147 5.0341 24 6 3.4356 -7.9041 3.7877 25 17 1.8014 -7.3596 3.5727 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8721 -3.6043 -0.8895 31 1 1.3479 -5.1034 -2.0500 32 1 0.1639 -5.9553 -1.2510 33 1 2.6975 -5.9560 2.1190 34 1 4.2014 -7.9591 0.6481 35 1 7.0589 -9.1141 4.2715 36 1 5.5077 -9.0695 6.1814 37 1 3.1917 -8.2961 5.8746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818056714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:19 Heat of formation + Delta-G solvation = -13.099771 kcal Electronic energy + Delta-G solvation = -23104.047145 eV Core-core repulsion = 19354.091540 eV Total energy + Delta-G solvation = -3749.955605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41509 -40.45348 -37.86109 -37.37334 -37.29527 -36.67650 -34.83809 -33.28541 -31.96145 -31.65159 -29.55722 -27.90418 -25.49244 -24.09880 -23.38119 -22.54986 -21.51754 -19.55260 -18.89177 -18.39829 -17.91412 -17.36808 -16.88339 -16.69189 -16.49822 -16.07326 -15.61482 -15.40318 -15.34919 -15.12663 -15.06138 -14.30910 -13.89301 -13.49427 -13.40465 -13.37849 -13.06124 -12.82960 -12.59281 -12.52001 -12.28802 -12.13870 -12.06097 -12.03370 -11.77593 -11.69616 -11.29345 -11.04201 -10.49471 -10.39767 -9.82528 -9.76548 -8.55933 -8.13788 -6.23701 -0.06314 0.00485 0.71390 0.95984 1.24643 1.36869 1.41635 1.42846 1.54979 2.42950 2.44597 2.95701 3.19460 3.45718 3.65815 3.80405 3.86143 4.01887 4.19775 4.22972 4.28669 4.39216 4.72729 4.86228 4.88787 5.08107 5.21149 5.25537 5.42340 5.57507 5.62828 5.83381 5.95033 5.98314 6.11656 6.30205 6.46147 6.50146 6.94598 7.11663 7.44352 8.97541 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.002923 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.812651 B = 9577.797490 C = 9599.144211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.084 4.084 11 C 0.099 3.901 12 H 0.112 0.888 13 N -0.810 5.810 14 C 0.485 3.515 15 O -0.578 6.578 16 N -0.506 5.506 17 N -0.554 5.554 18 C 0.197 3.803 19 C -0.090 4.090 20 Cl -0.063 7.063 21 C -0.062 4.062 22 C -0.122 4.122 23 C -0.064 4.064 24 C -0.104 4.104 25 Cl -0.060 7.060 26 H 0.262 0.738 27 H 0.009 0.991 28 H -0.004 1.004 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.348 0.652 32 H 0.349 0.651 33 H 0.427 0.573 34 H 0.431 0.569 35 H 0.167 0.833 36 H 0.179 0.821 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.087 -22.243 13.689 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.123 4.123 11 C -0.018 4.018 12 H 0.130 0.870 13 N -0.339 5.339 14 C 0.270 3.730 15 O -0.457 6.457 16 N -0.254 5.254 17 N -0.285 5.285 18 C 0.094 3.906 19 C -0.122 4.122 20 Cl -0.034 7.034 21 C -0.081 4.081 22 C -0.141 4.141 23 C -0.083 4.083 24 C -0.136 4.136 25 Cl -0.032 7.032 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.014 0.986 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.273 0.727 34 H 0.275 0.725 35 H 0.184 0.816 36 H 0.196 0.804 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.627 -21.678 13.054 27.447 hybrid contribution 0.556 0.208 -0.645 0.877 sum 11.183 -21.470 12.409 27.204 Atomic orbital electron populations 1.70106 1.07552 1.27439 1.51767 1.25876 0.95699 1.02940 0.95004 0.85500 0.79046 0.79375 0.77720 1.18918 1.20667 1.20272 1.21742 0.93340 0.92707 1.50299 0.92692 1.18833 0.93810 0.91107 0.96035 1.21447 0.97870 0.91954 1.00998 1.21578 0.93096 0.91111 0.96016 0.87041 1.59026 1.26725 1.45252 1.02937 1.22841 0.82406 0.86171 0.81613 1.90647 1.62192 1.55294 1.37570 1.45548 1.41150 1.27253 1.11450 1.43240 1.46386 1.32786 1.06042 1.17307 0.90876 0.97904 0.84520 1.20723 0.88234 1.11874 0.91413 1.98389 1.62199 1.97346 1.45452 1.21400 1.02082 0.95690 0.88950 1.21410 0.91705 1.00601 1.00420 1.21396 0.97615 0.94674 0.94598 1.20851 0.86040 1.10657 0.96016 1.98372 1.19385 1.88182 1.97215 0.92924 0.97239 0.98551 0.91700 0.93412 0.83767 0.83765 0.72690 0.72520 0.81590 0.80369 0.81893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.04 2.03 4.86 29.85 0.15 2.18 16 10 C -0.08 -3.39 4.78 30.59 0.15 -3.25 16 11 C 0.10 3.31 3.15 44.17 0.14 3.45 16 12 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 13 N -0.81 -26.98 8.44 -171.79 -1.45 -28.43 16 14 C 0.48 15.34 7.18 87.66 0.63 15.97 16 15 O -0.58 -21.00 16.10 -3.03 -0.05 -21.05 16 16 N -0.51 -13.73 5.02 -173.53 -0.87 -14.60 16 17 N -0.55 -13.95 5.94 -51.22 -0.30 -14.26 16 18 C 0.20 4.11 6.52 38.21 0.25 4.36 16 19 C -0.09 -1.59 6.34 22.44 0.14 -1.45 16 20 Cl -0.06 -1.20 27.97 -2.72 -0.08 -1.28 16 21 C -0.06 -0.69 9.82 22.28 0.22 -0.47 16 22 C -0.12 -1.00 10.04 22.29 0.22 -0.78 16 23 C -0.06 -0.75 9.82 22.28 0.22 -0.54 16 24 C -0.10 -1.91 6.23 22.44 0.14 -1.77 16 25 Cl -0.06 -1.22 25.24 -2.72 -0.07 -1.29 16 26 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 27 H 0.01 0.52 7.75 -2.39 -0.02 0.50 16 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.35 11.79 8.58 -89.69 -0.77 11.02 16 32 H 0.35 9.95 9.06 -89.69 -0.81 9.13 16 33 H 0.43 10.76 6.26 -213.31 -1.34 9.43 16 34 H 0.43 11.54 7.41 -213.32 -1.58 9.96 16 35 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.18 0.20 8.06 -2.91 -0.02 0.17 16 37 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -69.56 348.03 -0.90 -70.46 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -3.34 Total: 32.21 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 2.95 Total: -12.20 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -2.34 Total: -113.36 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.05 Total: -21.05 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.14 Total: -2.57 kcal Total: -69.56 -0.90 -70.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818056714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.358 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds