Wall clock time and date at job start Tue Mar 31 2020 16:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35559 * 116.99614 * 2 1 4 4 N 1.29504 * 124.93971 * 359.97438 * 3 2 1 5 5 C 1.32081 * 116.92053 * 180.02562 * 4 3 2 6 6 C 1.33363 * 114.55986 * 359.97438 * 5 4 3 7 7 S 1.76207 * 125.97152 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.39918 * 336.46010 * 7 6 5 9 9 O 1.42098 * 106.40181 * 203.54217 * 7 6 5 10 10 N 1.65597 * 107.21624 * 90.00068 * 7 6 5 11 11 C 1.46506 * 120.00079 * 90.00391 * 10 7 6 12 12 C 1.50701 * 109.46970 * 264.72396 * 11 10 7 13 13 H 1.08005 * 119.99694 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00052 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00110 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00229 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46771 * 359.97438 * 16 14 12 18 18 H 1.48489 * 109.47352 * 119.99395 * 16 14 12 19 19 H 1.48500 * 109.46935 * 239.99996 * 16 14 12 20 20 C 1.46499 * 119.99926 * 269.72430 * 10 7 6 21 21 C 1.53001 * 109.47277 * 265.27680 * 20 10 7 22 22 C 1.47193 * 109.47149 * 180.02562 * 21 20 10 23 23 N 9.97964 * 104.74070 * 20.82732 * 2 1 3 24 24 S 1.70969 * 124.93869 * 180.30726 * 3 2 1 25 25 H 1.08997 * 109.47806 * 299.99699 * 1 2 3 26 26 H 1.09007 * 109.47644 * 59.99983 * 1 2 3 27 27 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.08007 * 122.71683 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.46864 * 24.71745 * 11 10 7 30 30 H 1.08999 * 109.46950 * 144.72128 * 11 10 7 31 31 H 0.97000 * 119.99969 * 180.02562 * 15 14 12 32 32 H 1.08991 * 109.47463 * 25.27752 * 20 10 7 33 33 H 1.09000 * 109.46878 * 145.27981 * 20 10 7 34 34 H 1.09005 * 109.47307 * 300.00055 * 21 20 10 35 35 H 1.08995 * 109.46954 * 59.99844 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2079 0.0000 4 7 1.4350 2.3507 -0.0005 5 6 2.1929 3.4324 -0.0009 6 6 3.5044 3.1904 -0.0003 7 16 4.7810 4.4049 -0.0013 8 8 4.2104 5.5863 -0.5471 9 8 5.9332 3.7755 -0.5447 10 7 5.1357 4.7445 1.5803 11 6 6.1671 3.9756 2.2811 12 6 5.5208 2.8514 3.0489 13 1 4.4489 2.7228 3.0182 14 6 6.2978 1.9876 3.7913 15 7 7.6030 2.1445 3.8290 16 14 5.4968 0.5936 4.7424 17 1 4.0268 0.6343 4.5360 18 1 6.0292 -0.7055 4.2590 19 1 5.7974 0.7445 6.1888 20 6 4.4223 5.8179 2.2767 21 6 5.2364 7.1105 2.1913 22 6 4.5199 8.1888 2.8916 23 7 3.9682 9.0205 3.4315 24 16 3.7376 1.4441 -0.0075 25 1 -0.3634 0.5137 0.8899 26 1 -0.3635 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7836 4.4319 -0.0009 29 1 6.8689 3.5638 1.5558 30 1 6.7001 4.6284 2.9723 31 1 8.1496 1.5365 4.3510 32 1 3.4492 5.9700 1.8099 33 1 4.2847 5.5436 3.3226 34 1 6.2096 6.9585 2.6582 35 1 5.3741 7.3847 1.1455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820791627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:46 Heat of formation + Delta-G solvation = -30.247032 kcal Electronic energy + Delta-G solvation = -24095.352628 eV Core-core repulsion = 20348.740874 eV Total energy + Delta-G solvation = -3746.611753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -40.21479 -38.02912 -37.23517 -36.77894 -35.76618 -35.45127 -32.87607 -30.75795 -30.12278 -28.03271 -27.05151 -24.79325 -23.88844 -22.26146 -21.03871 -19.72307 -18.21776 -17.60338 -17.31011 -16.86880 -16.57458 -16.40951 -16.07393 -15.53666 -15.13445 -14.71533 -14.56629 -13.93373 -13.86210 -13.79469 -13.50850 -12.74604 -12.59365 -12.33849 -12.25775 -12.06397 -11.79098 -11.73705 -11.57573 -11.52746 -11.49064 -11.36554 -11.24803 -11.04120 -10.69986 -10.59439 -10.21133 -9.95572 -9.79652 -9.48549 -8.61450 -8.59285 -8.34399 -6.21665 -4.28172 0.42638 0.74545 1.00074 1.66512 2.63292 2.88964 2.95902 3.18379 3.24547 3.28035 3.29240 3.42937 4.04983 4.22866 4.27493 4.29367 4.82021 5.01352 5.05875 5.08122 5.14502 5.25830 5.33357 5.39811 5.61724 5.70299 5.74432 6.13250 6.30720 6.66750 7.09141 7.25104 7.39776 7.42751 7.70744 7.74605 8.00903 8.76491 9.39272 10.86399 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.008825 B = 0.006294 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.961549 B = 4447.548594 C = 6189.120955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.276 6.276 3 C 0.224 3.776 4 N -0.555 5.555 5 C 0.200 3.800 6 C -0.851 4.851 7 S 2.721 3.279 8 O -0.965 6.965 9 O -0.947 6.947 10 N -0.976 5.976 11 C 0.239 3.761 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.071 3.929 15 N -0.885 5.885 16 Si 0.884 3.116 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.282 1.282 20 C 0.137 3.863 21 C -0.053 4.053 22 C 0.222 3.778 23 N -0.450 5.450 24 S 0.346 5.654 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.189 0.811 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 -1.046 -7.288 11.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.182 6.182 3 C -0.089 4.089 4 N -0.287 5.287 5 C 0.041 3.959 6 C -1.055 5.055 7 S 2.805 3.195 8 O -0.956 6.956 9 O -0.937 6.937 10 N -0.815 5.815 11 C 0.118 3.882 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.133 4.133 15 N -0.523 5.523 16 Si 0.712 3.288 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.208 1.208 20 C 0.008 3.992 21 C -0.095 4.095 22 C -0.096 4.096 23 N -0.128 5.128 24 S 0.600 5.400 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.205 0.795 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.137 0.863 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.601 -0.648 -7.137 11.196 hybrid contribution -1.430 -0.786 0.912 1.869 sum -10.031 -1.434 -6.225 11.892 Atomic orbital electron populations 1.23079 0.76481 1.03652 1.03008 1.86361 1.23455 1.21025 1.87384 1.26089 0.97504 0.88629 0.96646 1.66721 1.39595 0.97255 1.25136 1.20937 0.86948 0.97666 0.90311 1.37317 1.19119 1.16496 1.32549 1.01281 0.72549 0.72671 0.72989 1.93540 1.80044 1.44723 1.77264 1.93585 1.46038 1.77355 1.76712 1.57461 1.49909 1.43209 1.30933 1.19416 0.85018 0.90503 0.93306 1.21529 0.94101 1.12666 1.30034 0.91909 1.24868 0.94684 0.97494 0.96283 1.69914 1.03971 1.37855 1.40593 0.86650 0.79737 0.82454 0.79965 1.19692 1.20577 1.20816 1.20942 0.93552 0.84002 1.00684 1.19897 0.99617 0.89044 1.00947 1.29014 0.93429 0.93999 0.93121 1.81128 1.09880 1.11402 1.10348 1.84371 0.95617 0.95527 1.64475 0.91721 0.91815 0.87855 0.79463 0.92383 0.93403 0.92480 0.90460 0.88573 0.86265 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.63 101.05 1.07 1.42 16 2 O -0.28 -3.76 10.56 -18.37 -0.19 -3.95 16 3 C 0.22 3.46 8.13 51.78 0.42 3.88 16 4 N -0.55 -8.55 9.88 -16.00 -0.16 -8.71 16 5 C 0.20 2.97 11.06 -19.15 -0.21 2.76 16 6 C -0.85 -13.96 6.64 29.03 0.19 -13.77 16 7 S 2.72 46.65 5.80 -107.50 -0.62 46.03 16 8 O -0.97 -16.09 16.80 -57.17 -0.96 -17.05 16 9 O -0.95 -18.96 16.50 -57.17 -0.94 -19.91 16 10 N -0.98 -16.55 2.77 -115.66 -0.32 -16.87 16 11 C 0.24 5.02 5.44 -5.19 -0.03 5.00 16 12 C -0.54 -12.75 9.38 -34.44 -0.32 -13.07 16 13 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -23.33 13.29 55.43 0.74 -22.59 16 16 Si 0.88 19.65 29.54 -169.99 -5.02 14.63 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.14 1.88 5.29 -4.04 -0.02 1.85 16 21 C -0.05 -0.63 6.02 -29.52 -0.18 -0.80 16 22 C 0.22 2.99 15.43 -20.81 -0.32 2.67 16 23 N -0.45 -7.13 18.53 42.10 0.78 -6.35 16 24 S 0.35 5.70 23.14 -107.50 -2.49 3.21 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.19 2.24 8.06 -52.48 -0.42 1.82 16 29 H 0.06 1.35 6.91 -51.93 -0.36 0.99 16 30 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 32 H 0.08 0.92 7.61 -51.93 -0.40 0.53 16 33 H 0.10 1.34 8.11 -51.93 -0.42 0.91 16 34 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -30.37 347.23 -7.13 -37.50 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -3.68 Total: -2.76 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 0.51 Total: -8.40 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 1.04 Total: -54.53 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -2.10 Total: -40.91 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 52.35 SS G_CDS: -3.11 Total: 49.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.37 -7.13 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820791627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.257 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds