Wall clock time and date at job start Tue Mar 31 2020 16:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35559 * 116.99614 * 2 1 4 4 N 1.29504 * 124.93971 * 359.97438 * 3 2 1 5 5 C 1.32081 * 116.92053 * 180.02562 * 4 3 2 6 6 C 1.33363 * 114.55986 * 359.97438 * 5 4 3 7 7 S 1.76207 * 125.97152 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.39918 * 336.46010 * 7 6 5 9 9 O 1.42098 * 106.40181 * 203.54217 * 7 6 5 10 10 N 1.65597 * 107.21624 * 90.00068 * 7 6 5 11 11 C 1.46506 * 120.00079 * 90.00391 * 10 7 6 12 12 C 1.50701 * 109.46970 * 264.72396 * 11 10 7 13 13 H 1.08005 * 119.99694 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00052 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00110 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00229 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46771 * 359.97438 * 16 14 12 18 18 H 1.48489 * 109.47352 * 119.99395 * 16 14 12 19 19 H 1.48500 * 109.46935 * 239.99996 * 16 14 12 20 20 C 1.46499 * 119.99926 * 269.72430 * 10 7 6 21 21 C 1.53001 * 109.47277 * 265.27680 * 20 10 7 22 22 C 1.47193 * 109.47149 * 180.02562 * 21 20 10 23 23 N 9.97964 * 104.74070 * 20.82732 * 2 1 3 24 24 S 1.70969 * 124.93869 * 180.30726 * 3 2 1 25 25 H 1.08997 * 109.47806 * 299.99699 * 1 2 3 26 26 H 1.09007 * 109.47644 * 59.99983 * 1 2 3 27 27 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.08007 * 122.71683 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.46864 * 24.71745 * 11 10 7 30 30 H 1.08999 * 109.46950 * 144.72128 * 11 10 7 31 31 H 0.97000 * 119.99969 * 180.02562 * 15 14 12 32 32 H 1.08991 * 109.47463 * 25.27752 * 20 10 7 33 33 H 1.09000 * 109.46878 * 145.27981 * 20 10 7 34 34 H 1.09005 * 109.47307 * 300.00055 * 21 20 10 35 35 H 1.08995 * 109.46954 * 59.99844 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2079 0.0000 4 7 1.4350 2.3507 -0.0005 5 6 2.1929 3.4324 -0.0009 6 6 3.5044 3.1904 -0.0003 7 16 4.7810 4.4049 -0.0013 8 8 4.2104 5.5863 -0.5471 9 8 5.9332 3.7755 -0.5447 10 7 5.1357 4.7445 1.5803 11 6 6.1671 3.9756 2.2811 12 6 5.5208 2.8514 3.0489 13 1 4.4489 2.7228 3.0182 14 6 6.2978 1.9876 3.7913 15 7 7.6030 2.1445 3.8290 16 14 5.4968 0.5936 4.7424 17 1 4.0268 0.6343 4.5360 18 1 6.0292 -0.7055 4.2590 19 1 5.7974 0.7445 6.1888 20 6 4.4223 5.8179 2.2767 21 6 5.2364 7.1105 2.1913 22 6 4.5199 8.1888 2.8916 23 7 3.9682 9.0205 3.4315 24 16 3.7376 1.4441 -0.0075 25 1 -0.3634 0.5137 0.8899 26 1 -0.3635 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7836 4.4319 -0.0009 29 1 6.8689 3.5638 1.5558 30 1 6.7001 4.6284 2.9723 31 1 8.1496 1.5365 4.3510 32 1 3.4492 5.9700 1.8099 33 1 4.2847 5.5436 3.3226 34 1 6.2096 6.9585 2.6582 35 1 5.3741 7.3847 1.1455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820791627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:46 Heat of formation + Delta-G solvation = -53.090857 kcal Electronic energy + Delta-G solvation = -24096.343210 eV Core-core repulsion = 20348.740874 eV Total energy + Delta-G solvation = -3747.602336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35835 -39.12984 -38.45952 -38.16471 -37.07232 -36.86661 -34.63518 -32.05772 -31.31090 -28.93789 -28.70759 -25.93911 -25.31791 -23.75342 -22.21858 -20.90230 -19.54374 -18.86811 -18.56256 -18.23495 -18.09728 -17.47460 -17.38139 -16.92505 -16.30777 -16.15936 -15.80158 -15.23571 -15.02794 -14.89894 -14.76687 -14.35441 -13.91153 -13.62012 -13.46100 -13.17919 -13.15608 -13.02359 -12.94649 -12.85084 -12.78949 -12.67879 -12.62179 -12.47834 -12.28868 -12.08303 -11.69479 -11.55530 -11.03111 -10.74522 -10.48876 -9.87528 -9.78748 -8.10838 -6.20077 -0.81007 -0.52479 -0.25977 0.43958 1.41959 1.43814 1.47470 1.53886 1.78856 1.88889 2.08045 2.21391 2.46838 2.74998 3.14478 3.15830 3.24041 3.50920 3.97909 4.18453 4.20668 4.31085 4.32930 4.55278 4.56973 4.64292 4.72496 5.07822 5.16467 5.44575 5.55638 5.62028 5.81110 5.92989 6.18852 6.22602 6.64422 6.91714 7.49332 8.97181 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.008825 B = 0.006294 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.961549 B = 4447.548594 C = 6189.120955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.282 6.282 3 C 0.236 3.764 4 N -0.558 5.558 5 C 0.211 3.789 6 C -0.866 4.866 7 S 2.735 3.265 8 O -0.959 6.959 9 O -0.980 6.980 10 N -0.975 5.975 11 C 0.251 3.749 12 C -0.535 4.535 13 H 0.066 0.934 14 C 0.025 3.975 15 N -0.920 5.920 16 Si 0.930 3.070 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.126 3.874 21 C -0.047 4.047 22 C 0.248 3.752 23 N -0.491 5.491 24 S 0.301 5.699 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.219 0.781 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 -0.972 -7.467 13.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.188 6.188 3 C -0.076 4.076 4 N -0.291 5.291 5 C 0.053 3.947 6 C -1.071 5.071 7 S 2.821 3.179 8 O -0.949 6.949 9 O -0.971 6.971 10 N -0.813 5.813 11 C 0.128 3.872 12 C -0.575 4.575 13 H 0.084 0.916 14 C -0.175 4.175 15 N -0.560 5.560 16 Si 0.757 3.243 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.001 4.001 21 C -0.089 4.089 22 C -0.069 4.069 23 N -0.170 5.170 24 S 0.555 5.445 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.155 0.845 28 H 0.235 0.765 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.610 -0.557 -7.320 12.902 hybrid contribution -0.961 -0.850 0.902 1.568 sum -11.570 -1.408 -6.418 13.306 Atomic orbital electron populations 1.23443 0.74174 1.06065 1.03249 1.86377 1.25629 1.20096 1.86696 1.26154 0.96919 0.89288 0.95271 1.66827 1.39314 0.97313 1.25650 1.21482 0.86340 0.98814 0.88079 1.37096 1.19434 1.15731 1.34859 1.00692 0.72117 0.72478 0.72651 1.93539 1.79828 1.44490 1.77080 1.93545 1.47995 1.78051 1.77487 1.57270 1.49631 1.43652 1.30769 1.19005 0.85395 0.90283 0.92474 1.21831 0.94197 1.12631 1.28822 0.91604 1.25479 0.95047 0.99501 0.97513 1.70002 1.05025 1.38976 1.41990 0.85921 0.79226 0.80349 0.78797 1.19088 1.20760 1.20896 1.21202 0.94535 0.83680 1.00673 1.19930 0.99534 0.87572 1.01872 1.29113 0.92375 0.93397 0.92038 1.81162 1.11231 1.12773 1.11798 1.84500 0.97466 0.96586 1.65941 0.91817 0.91164 0.84465 0.76451 0.94913 0.93517 0.92665 0.88177 0.88663 0.85080 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.63 113.37 1.21 1.66 16 2 O -0.28 -7.13 10.56 -88.66 -0.94 -8.06 16 3 C 0.24 6.93 8.13 130.59 1.06 7.99 16 4 N -0.56 -15.92 9.88 -318.83 -3.15 -19.07 16 5 C 0.21 5.77 11.06 83.55 0.92 6.69 16 6 C -0.87 -27.27 6.64 66.72 0.44 -26.82 16 7 S 2.74 90.67 5.80 -56.49 -0.33 90.34 16 8 O -0.96 -29.79 16.80 -128.00 -2.15 -31.94 16 9 O -0.98 -39.49 16.50 -128.00 -2.11 -41.60 16 10 N -0.98 -31.82 2.77 -519.85 -1.44 -33.26 16 11 C 0.25 10.53 5.44 85.63 0.47 10.99 16 12 C -0.54 -24.85 9.38 25.60 0.24 -24.61 16 13 H 0.07 2.97 7.81 -2.91 -0.02 2.94 16 14 C 0.02 1.24 5.46 84.65 0.46 1.70 16 15 N -0.92 -48.98 13.29 21.45 0.28 -48.69 16 16 Si 0.93 40.00 29.54 68.60 2.03 42.02 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 C 0.13 3.19 5.29 86.38 0.46 3.64 16 21 C -0.05 -1.01 6.02 28.79 0.17 -0.84 16 22 C 0.25 6.18 15.43 89.46 1.38 7.56 16 23 N -0.49 -14.90 18.53 19.99 0.37 -14.53 16 24 S 0.30 9.82 23.14 -56.49 -1.31 8.51 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.22 4.41 8.06 -2.91 -0.02 4.38 16 29 H 0.03 1.56 6.91 -2.39 -0.02 1.54 16 30 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 31 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 32 H 0.10 2.08 7.61 -2.39 -0.02 2.06 16 33 H 0.10 2.45 8.11 -2.39 -0.02 2.43 16 34 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -64.22 347.23 -0.80 -65.02 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.13 Total: 3.28 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 6.81 Total: -12.03 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -3.93 Total: -115.54 kcal Atomic # 8 Polarization: -76.41 SS G_CDS: -5.20 Total: -81.61 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 16 Polarization: 100.49 SS G_CDS: -1.63 Total: 98.86 kcal Total: -64.22 -0.80 -65.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820791627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.927 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds