Wall clock time and date at job start Tue Mar 31 2020 16:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00287 * 2 1 4 4 H 1.48492 * 109.47209 * 269.99991 * 3 2 1 5 5 H 1.48505 * 109.46984 * 29.99493 * 3 2 1 6 6 H 1.48501 * 109.47362 * 149.99377 * 3 2 1 7 7 C 1.37884 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99744 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00238 * 65.69254 * 10 9 7 12 12 C 1.53236 * 109.34146 * 187.25452 * 11 10 9 13 13 N 1.47076 * 108.52177 * 306.17405 * 12 11 10 14 14 C 1.34777 * 120.88313 * 231.16301 * 13 12 11 15 15 O 1.21716 * 120.00476 * 173.25350 * 14 13 12 16 16 C 1.46549 * 119.99767 * 353.25301 * 14 13 12 17 17 C 1.37956 * 126.22001 * 157.43449 * 16 14 13 18 18 C 1.39803 * 107.12548 * 179.84461 * 17 16 14 19 19 Cl 1.73601 * 126.06055 * 180.15462 * 18 17 16 20 20 C 1.35716 * 107.87291 * 0.42072 * 18 17 16 21 21 Cl 1.73604 * 125.58397 * 179.71729 * 20 18 17 22 22 N 1.35661 * 108.83231 * 359.73796 * 20 18 17 23 23 H 0.97008 * 125.69360 * 179.97438 * 22 20 18 24 24 C 1.47080 * 118.24008 * 51.18174 * 13 12 11 25 25 C 1.46896 * 111.00014 * 190.00005 * 10 9 7 26 26 H 0.96997 * 119.99682 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47251 * 59.99227 * 9 7 2 28 28 H 1.08998 * 109.46908 * 299.99178 * 9 7 2 29 29 H 1.09004 * 109.49024 * 67.29356 * 11 10 9 30 30 H 1.09002 * 109.49732 * 307.21904 * 11 10 9 31 31 H 1.09002 * 109.62507 * 186.46270 * 12 11 10 32 32 H 1.09001 * 109.62463 * 65.88519 * 12 11 10 33 33 H 1.08001 * 126.43986 * 359.96683 * 17 16 14 34 34 H 1.09002 * 109.62530 * 68.52294 * 24 13 12 35 35 H 1.09000 * 109.63055 * 189.10783 * 24 13 12 36 36 H 1.08995 * 109.49272 * 52.78271 * 25 10 9 37 37 H 1.09004 * 109.49141 * 292.70517 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 2.9768 -3.6491 1.2504 12 6 4.0790 -4.7078 1.1385 13 7 3.4616 -5.9863 0.7543 14 6 3.7122 -7.1125 1.4509 15 8 3.1007 -8.1339 1.1973 16 6 4.7212 -7.1074 2.5138 17 6 4.7949 -7.9893 3.5721 18 6 5.9068 -7.6233 4.3363 19 17 6.4563 -8.4101 5.7830 20 6 6.4770 -6.5403 3.7500 21 17 7.8860 -5.7049 4.3250 22 7 5.7653 -6.2171 2.6412 23 1 5.9589 -5.4818 2.0387 24 6 2.5637 -6.0032 -0.4104 25 6 1.5211 -4.8935 -0.2376 26 1 -0.4849 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8904 29 1 2.3149 -3.8993 2.0796 30 1 3.4273 -2.6722 1.4261 31 1 4.5802 -4.8176 2.1002 32 1 4.8002 -4.4066 0.3788 33 1 4.1214 -8.8097 3.7715 34 1 3.1393 -5.8265 -1.3190 35 1 2.0631 -6.9695 -0.4728 36 1 0.9159 -4.8191 -1.1410 37 1 0.8795 -5.1264 0.6123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827485072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:15 Heat of formation + Delta-G solvation = 6.060453 kcal Electronic energy + Delta-G solvation = -23605.775783 eV Core-core repulsion = 19856.651027 eV Total energy + Delta-G solvation = -3749.124756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.90259 -40.81643 -39.01867 -37.92063 -37.54072 -36.14520 -34.48431 -32.83157 -32.05503 -30.71072 -29.73699 -27.37304 -24.96183 -24.61903 -23.26902 -22.26543 -21.76086 -21.16227 -19.06804 -18.50653 -17.96494 -17.07186 -16.93970 -16.68104 -16.09781 -15.85654 -15.82108 -15.55766 -15.32052 -15.13600 -14.72804 -14.46023 -14.37246 -14.06649 -13.57475 -13.11511 -13.02492 -12.93435 -12.81254 -12.63085 -12.50861 -12.41478 -12.34753 -12.19493 -11.99134 -11.81874 -11.32417 -11.30022 -10.62164 -10.21181 -9.96373 -9.41185 -9.11993 -8.20916 -6.31345 -0.00253 0.31151 0.98858 1.03803 1.43818 1.44626 1.55040 1.62567 1.89966 2.20017 2.40433 3.10590 3.17128 3.24006 3.69009 3.73811 3.92676 4.07678 4.12838 4.16405 4.30339 4.43113 4.47160 4.64162 4.77651 4.86301 4.93221 4.98082 5.12060 5.17506 5.22834 5.32177 5.62586 5.78640 6.00174 6.09629 6.24359 6.51392 6.81606 6.84539 7.38950 8.90420 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.003067 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.798145 B = 9127.403233 C =10524.782939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.521 4.521 8 H 0.072 0.928 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.051 3.949 12 C 0.102 3.898 13 N -0.606 5.606 14 C 0.593 3.407 15 O -0.556 6.556 16 C -0.022 4.022 17 C -0.091 4.091 18 C -0.108 4.108 19 Cl -0.023 7.023 20 C 0.102 3.898 21 Cl 0.020 6.980 22 N -0.513 5.513 23 H 0.442 0.558 24 C 0.129 3.871 25 C 0.040 3.960 26 H 0.264 0.736 27 H 0.007 0.993 28 H -0.042 1.042 29 H 0.013 0.987 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.171 0.829 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.112 -13.845 7.548 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.182 1.182 7 C -0.559 4.559 8 H 0.090 0.910 9 C 0.082 3.918 10 N -0.259 5.259 11 C -0.078 4.078 12 C -0.020 4.020 13 N -0.338 5.338 14 C 0.382 3.618 15 O -0.435 6.435 16 C -0.135 4.135 17 C -0.117 4.117 18 C -0.143 4.143 19 Cl 0.005 6.995 20 C -0.043 4.043 21 Cl 0.049 6.951 22 N -0.120 5.120 23 H 0.289 0.711 24 C 0.007 3.993 25 C -0.089 4.089 26 H 0.072 0.928 27 H 0.025 0.975 28 H -0.024 1.024 29 H 0.031 0.969 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.188 0.812 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 16.149 -14.046 7.040 22.531 hybrid contribution -0.653 1.347 0.565 1.600 sum 15.496 -12.699 7.606 21.430 Atomic orbital electron populations 1.70094 1.07916 1.27911 1.51766 1.25933 0.95653 1.03312 0.94839 0.85383 0.78698 0.78190 0.78360 1.20049 1.21388 1.18192 1.21459 0.93905 0.90577 1.49975 0.90961 1.19379 0.90076 0.88857 0.93503 1.62029 1.27074 1.02652 1.34192 1.22312 0.95495 0.99818 0.90142 1.22405 0.96029 0.81539 1.02067 1.48188 1.47115 1.08184 1.30298 1.17048 0.81575 0.83138 0.80059 1.90841 1.51744 1.33122 1.67778 1.20060 0.94821 0.96994 1.01652 1.21264 0.97716 1.00187 0.92562 1.19666 1.00229 0.98797 0.95572 1.98353 1.88862 1.78919 1.33323 1.20759 0.93749 0.97688 0.92090 1.98447 1.33944 1.76672 1.86087 1.42656 1.21702 1.26341 1.21309 0.71088 1.21756 0.91204 0.98817 0.87548 1.22478 0.95736 0.89923 1.00764 0.92770 0.97528 1.02388 0.96875 0.89043 0.88082 0.87665 0.81195 0.88794 0.88465 0.89572 0.96671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.73 13.29 21.45 0.28 -54.44 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 41.88 29.54 68.60 2.03 43.90 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.52 -27.41 8.41 25.60 0.22 -27.19 16 8 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 9 C 0.21 10.44 4.72 85.56 0.40 10.84 16 10 N -0.53 -20.73 4.62 -899.83 -4.16 -24.89 16 11 C 0.05 1.70 5.46 86.38 0.47 2.17 16 12 C 0.10 2.33 5.39 86.35 0.47 2.80 16 13 N -0.61 -15.45 3.01 -822.78 -2.48 -17.92 16 14 C 0.59 15.80 7.63 86.41 0.66 16.46 16 15 O -0.56 -18.12 16.42 -4.40 -0.07 -18.19 16 16 C -0.02 -0.47 6.41 40.31 0.26 -0.22 16 17 C -0.09 -1.92 10.71 22.58 0.24 -1.68 16 18 C -0.11 -2.10 6.66 22.06 0.15 -1.95 16 19 Cl -0.02 -0.41 29.12 -2.72 -0.08 -0.49 16 20 C 0.10 1.80 7.75 83.52 0.65 2.45 16 21 Cl 0.02 0.30 29.13 -2.72 -0.08 0.22 16 22 N -0.51 -8.72 4.79 -174.52 -0.84 -9.55 16 23 H 0.44 5.69 6.29 -92.70 -0.58 5.10 16 24 C 0.13 3.43 6.61 86.35 0.57 4.01 16 25 C 0.04 1.33 5.62 86.38 0.49 1.82 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.01 0.36 7.97 -2.39 -0.02 0.34 16 28 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 29 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.09 3.19 6.67 -2.39 -0.02 3.17 16 31 H 0.10 1.84 4.34 -2.39 -0.01 1.83 16 32 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.17 3.38 8.06 -2.91 -0.02 3.35 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.10 2.57 7.04 -2.39 -0.02 2.56 16 36 H 0.09 2.81 7.99 -2.39 -0.02 2.80 16 37 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -64.51 336.55 0.18 -64.33 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.54 Total: 7.04 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.03 Total: 10.00 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -7.18 Total: -106.80 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.07 Total: -18.19 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.16 Total: -0.27 kcal Total: -64.51 0.18 -64.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.386 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds