Wall clock time and date at job start Tue Mar 31 2020 16:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35888 * 117.00181 * 2 1 4 4 C 1.38794 * 120.02817 * 359.97438 * 3 2 1 5 5 C 1.38156 * 120.05439 * 180.02562 * 4 3 2 6 6 C 1.38199 * 120.11126 * 0.25031 * 5 4 3 7 7 N 1.48007 * 119.97154 * 179.70426 * 6 5 4 8 8 O 1.21795 * 120.00270 * 5.56394 * 7 6 5 9 9 O 1.21799 * 119.99314 * 185.56713 * 7 6 5 10 10 C 1.38750 * 120.04983 * 359.45410 * 6 5 4 11 11 O 1.35907 * 120.02505 * 180.27804 * 10 6 5 12 12 S 1.52201 * 113.99873 * 95.02259 * 11 10 6 13 13 O 1.42107 * 104.26991 * 191.28952 * 12 11 10 14 14 O 1.42100 * 104.28041 * 319.14758 * 12 11 10 15 15 C 1.81396 * 104.44856 * 75.22320 * 12 11 10 16 16 C 1.52997 * 109.47069 * 174.43462 * 15 12 11 17 17 C 1.50711 * 109.47226 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99614 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99846 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99774 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00210 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47305 * 89.99786 * 21 19 17 23 23 H 1.48507 * 109.47015 * 210.00062 * 21 19 17 24 24 H 1.48504 * 109.46960 * 329.99777 * 21 19 17 25 25 C 1.38613 * 120.02786 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47093 * 300.00545 * 1 2 3 27 27 H 1.08997 * 109.46928 * 60.00406 * 1 2 3 28 28 H 1.08997 * 109.46881 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.97078 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.94464 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.47147 * 294.43419 * 15 12 11 32 32 H 1.08996 * 109.47454 * 54.43277 * 15 12 11 33 33 H 1.08998 * 109.47174 * 299.99640 * 16 15 12 34 34 H 1.09003 * 109.46874 * 60.00242 * 16 15 12 35 35 H 0.97000 * 120.00128 * 179.97438 * 20 19 17 36 36 H 1.07997 * 120.05868 * 359.95461 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3752 -0.0005 5 6 1.9174 3.6064 -0.0011 6 6 3.2973 3.6820 -0.0063 7 7 3.9654 5.0027 -0.0135 8 8 3.3040 6.0204 0.0875 9 8 5.1767 5.0716 -0.1204 10 6 4.0568 2.5209 0.0004 11 8 5.4138 2.5958 0.0010 12 16 6.0376 2.5158 1.3870 13 8 7.3960 2.8788 1.1812 14 8 5.1833 3.3064 2.2020 15 6 5.9086 0.7643 1.8409 16 6 6.6314 0.5269 3.1683 17 6 6.5237 -0.9282 3.5458 18 1 5.9925 -1.6148 2.9034 19 6 7.1025 -1.3825 4.7118 20 7 7.0081 -2.6521 5.0415 21 14 8.0195 -0.1944 5.8240 22 1 7.0758 0.3876 6.8119 23 1 9.1000 -0.9198 6.5394 24 1 8.6119 0.8935 5.0049 25 6 3.4302 1.2839 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2122 2.3187 -0.0005 30 1 1.3279 4.5114 -0.0019 31 1 4.8582 0.4924 1.9455 32 1 6.3664 0.1527 1.0635 33 1 7.6818 0.7987 3.0638 34 1 6.1734 1.1385 3.9458 35 1 7.4156 -2.9719 5.8616 36 1 4.0197 0.3791 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827953838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:19 Heat of formation + Delta-G solvation = -108.609866 kcal Electronic energy + Delta-G solvation = -27056.992164 eV Core-core repulsion = 22831.936721 eV Total energy + Delta-G solvation = -4225.055443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.54925 -41.27519 -40.24463 -37.62893 -37.03666 -36.50581 -35.91983 -34.14432 -32.20040 -31.56709 -31.16282 -28.29884 -26.27115 -26.19161 -24.22699 -22.97015 -21.65825 -20.84936 -19.44389 -18.95626 -18.86003 -18.15054 -17.75890 -17.49683 -17.14225 -16.94801 -16.44811 -16.16089 -15.37906 -15.00237 -14.88486 -14.37834 -14.08729 -13.86766 -13.63819 -13.25363 -12.98110 -12.86223 -12.59057 -12.05062 -12.02802 -11.99771 -11.83487 -11.79557 -11.61247 -11.38924 -11.36837 -11.22568 -11.13203 -10.55977 -10.23439 -9.94859 -9.73398 -9.45482 -9.36048 -8.73215 -6.23731 -4.26110 -0.55860 -0.02565 0.52480 1.08933 1.22660 1.84940 2.49474 2.63074 3.22177 3.30189 3.34829 3.64696 3.74426 3.86929 3.92644 4.17250 4.24637 4.30023 4.47164 4.57821 4.61832 4.81673 4.94725 5.05006 5.10781 5.12469 5.24929 5.27624 5.33574 5.68454 6.07054 6.24588 6.43995 6.66099 6.80972 7.44471 7.58617 8.27599 8.75863 9.35352 10.88299 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.004788 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.823565 B = 5846.137238 C = 7546.087306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.293 6.293 3 C 0.206 3.794 4 C -0.203 4.203 5 C 0.005 3.995 6 C -0.072 4.072 7 N 0.041 4.959 8 O -0.152 6.152 9 O -0.154 6.154 10 C 0.198 3.802 11 O -0.656 6.656 12 S 2.567 3.433 13 O -0.909 6.909 14 O -0.958 6.958 15 C -0.607 4.607 16 C -0.004 4.004 17 C -0.522 4.522 18 H 0.079 0.921 19 C 0.074 3.926 20 N -0.893 5.893 21 Si 0.867 3.133 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.260 1.260 25 C -0.177 4.177 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.162 0.838 30 H 0.170 0.830 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.039 0.961 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.042 7.168 -12.773 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.204 6.204 3 C 0.158 3.842 4 C -0.223 4.223 5 C -0.014 4.014 6 C -0.158 4.158 7 N 0.562 4.438 8 O -0.369 6.369 9 O -0.370 6.370 10 C 0.153 3.847 11 O -0.612 6.612 12 S 2.666 3.334 13 O -0.907 6.907 14 O -0.957 6.957 15 C -0.738 4.738 16 C -0.043 4.043 17 C -0.561 4.561 18 H 0.097 0.903 19 C -0.129 4.129 20 N -0.531 5.531 21 Si 0.692 3.308 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.184 1.184 25 C -0.198 4.198 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.180 0.820 30 H 0.188 0.812 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.925 6.943 -12.807 22.331 hybrid contribution 0.518 0.214 0.757 0.942 sum -16.407 7.156 -12.050 21.578 Atomic orbital electron populations 1.23372 0.76488 1.05575 1.02222 1.86217 1.22900 1.25036 1.86219 1.18831 0.91122 0.85375 0.88897 1.21418 1.01853 0.90365 1.08664 1.20780 0.90333 1.00249 0.90029 1.21093 0.93551 0.82613 1.18551 1.43100 1.01165 1.02036 0.97547 1.94493 1.65353 1.24114 1.52959 1.94610 0.95709 1.93591 1.53061 1.17130 0.78420 0.91529 0.97593 1.85906 1.23389 1.91917 1.60033 1.06484 0.75143 0.79378 0.72382 1.93621 1.33048 1.82338 1.81708 1.93598 1.66764 1.67507 1.67817 1.30685 1.11207 1.20585 1.11323 1.19423 0.95648 1.01059 0.88166 1.20791 1.36627 0.90827 1.07842 0.90252 1.24956 0.95420 0.95152 0.97367 1.69870 1.44447 1.13966 1.24773 0.86962 0.80466 0.81837 0.81489 1.19620 1.20552 1.18437 1.20686 0.93500 0.97264 1.08328 0.91410 0.91661 0.86902 0.82013 0.81211 0.85252 0.84451 0.94322 0.95289 0.92259 0.80504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 101.05 0.99 1.06 16 2 O -0.29 -2.35 10.49 -19.39 -0.20 -2.55 16 3 C 0.21 1.85 6.68 -39.24 -0.26 1.59 16 4 C -0.20 -1.40 9.04 -39.41 -0.36 -1.76 16 5 C 0.01 0.05 9.55 -39.63 -0.38 -0.33 16 6 C -0.07 -1.00 6.24 -79.78 -0.50 -1.50 16 7 N 0.04 0.70 4.36 34.05 0.15 0.85 16 8 O -0.15 -2.38 18.46 -29.46 -0.54 -2.93 16 9 O -0.15 -2.97 16.35 -37.21 -0.61 -3.58 16 10 C 0.20 2.83 4.69 -39.24 -0.18 2.64 16 11 O -0.66 -10.86 8.30 -54.91 -0.46 -11.31 16 12 S 2.57 48.61 4.64 -107.50 -0.50 48.11 16 13 O -0.91 -19.81 18.09 -67.04 -1.21 -21.02 16 14 O -0.96 -19.55 15.93 -67.82 -1.08 -20.63 16 15 C -0.61 -11.03 5.05 37.16 0.19 -10.84 16 16 C 0.00 -0.09 4.05 -27.88 -0.11 -0.20 16 17 C -0.52 -14.18 9.66 -34.44 -0.33 -14.51 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 20 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 21 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 25 C -0.18 -1.99 8.40 -39.29 -0.33 -2.32 16 26 H 0.07 0.17 7.66 -51.93 -0.40 -0.23 16 27 H 0.06 0.11 7.66 -51.93 -0.40 -0.29 16 28 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.16 0.46 6.29 -52.49 -0.33 0.13 16 30 H 0.17 1.09 7.62 -52.49 -0.40 0.69 16 31 H 0.13 2.04 6.62 -51.92 -0.34 1.70 16 32 H 0.14 2.18 8.14 -51.93 -0.42 1.75 16 33 H 0.04 0.90 7.20 -51.93 -0.37 0.53 16 34 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.18 1.72 7.08 -52.49 -0.37 1.35 16 LS Contribution 327.73 15.07 4.94 4.94 Total: -1.00 -36.77 327.73 -8.22 -45.00 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -3.44 Total: -3.51 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -1.37 Total: -24.19 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.92 Total: -24.78 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -4.10 Total: -62.03 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 48.61 SS G_CDS: -0.50 Total: 48.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.77 -8.22 -45.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827953838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.615 kcal (2) G-P(sol) polarization free energy of solvation -36.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds